nla iii Illumina Inc Search Results


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  • 93
    Illumina Inc nla iii protocol
    Nla Iii Protocol, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 93/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/nla iii protocol/product/Illumina Inc
    Average 93 stars, based on 4 article reviews
    Price from $9.99 to $1999.99
    nla iii protocol - by Bioz Stars, 2020-05
    93/100 stars
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    88
    Illumina Inc restriction enzyme nla iii
    Restriction Enzyme Nla Iii, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 88/100, based on 45 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/restriction enzyme nla iii/product/Illumina Inc
    Average 88 stars, based on 45 article reviews
    Price from $9.99 to $1999.99
    restriction enzyme nla iii - by Bioz Stars, 2020-05
    88/100 stars
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    85
    Illumina Inc nla iii sample prep kit
    Nla Iii Sample Prep Kit, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 85/100, based on 23 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/nla iii sample prep kit/product/Illumina Inc
    Average 85 stars, based on 23 article reviews
    Price from $9.99 to $1999.99
    nla iii sample prep kit - by Bioz Stars, 2020-05
    85/100 stars
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    86
    Illumina Inc nla iii dge 13
    Higher reproducibility and better dynamics of differential expression detection using EXPRSS. (A-C) Pairwise scatter plots of gene counts from treatment replicates, expressed as tags per million in log10 scale. Correlations between four independent technical replicates of EXPRSS Tag-seq (A) , made from same RNA sample; four independent biological replicates of EXPRSS Tag-seq (B) and <t>Nla</t> <t>III-DGE</t> (C) are presented. Pearson correlation of log10 transformed tag counts per million plus 1 is depicted at left hand top corner of each comparison. Right hand bottom corner indicates replicate number depicted on X and Y-axis, respectively. (D-E) Example of differential expression using reads aligned (small black arrows) to WRKY22 , a flg22 responsive gene are presented from control (D) and treatment (E) .
    Nla Iii Dge 13, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 86/100, based on 2 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/nla iii dge 13/product/Illumina Inc
    Average 86 stars, based on 2 article reviews
    Price from $9.99 to $1999.99
    nla iii dge 13 - by Bioz Stars, 2020-05
    86/100 stars
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    92
    Illumina Inc ren nla iii primer
    Higher reproducibility and better dynamics of differential expression detection using EXPRSS. (A-C) Pairwise scatter plots of gene counts from treatment replicates, expressed as tags per million in log10 scale. Correlations between four independent technical replicates of EXPRSS Tag-seq (A) , made from same RNA sample; four independent biological replicates of EXPRSS Tag-seq (B) and <t>Nla</t> <t>III-DGE</t> (C) are presented. Pearson correlation of log10 transformed tag counts per million plus 1 is depicted at left hand top corner of each comparison. Right hand bottom corner indicates replicate number depicted on X and Y-axis, respectively. (D-E) Example of differential expression using reads aligned (small black arrows) to WRKY22 , a flg22 responsive gene are presented from control (D) and treatment (E) .
    Ren Nla Iii Primer, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 92/100, based on 8 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/ren nla iii primer/product/Illumina Inc
    Average 92 stars, based on 8 article reviews
    Price from $9.99 to $1999.99
    ren nla iii primer - by Bioz Stars, 2020-05
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    85
    Illumina Inc gex nla iii adapter 1
    Higher reproducibility and better dynamics of differential expression detection using EXPRSS. (A-C) Pairwise scatter plots of gene counts from treatment replicates, expressed as tags per million in log10 scale. Correlations between four independent technical replicates of EXPRSS Tag-seq (A) , made from same RNA sample; four independent biological replicates of EXPRSS Tag-seq (B) and <t>Nla</t> <t>III-DGE</t> (C) are presented. Pearson correlation of log10 transformed tag counts per million plus 1 is depicted at left hand top corner of each comparison. Right hand bottom corner indicates replicate number depicted on X and Y-axis, respectively. (D-E) Example of differential expression using reads aligned (small black arrows) to WRKY22 , a flg22 responsive gene are presented from control (D) and treatment (E) .
    Gex Nla Iii Adapter 1, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 85/100, based on 16 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/gex nla iii adapter 1/product/Illumina Inc
    Average 85 stars, based on 16 article reviews
    Price from $9.99 to $1999.99
    gex nla iii adapter 1 - by Bioz Stars, 2020-05
    85/100 stars
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    85
    Illumina Inc tag profiling sample prep kits
    Higher reproducibility and better dynamics of differential expression detection using EXPRSS. (A-C) Pairwise scatter plots of gene counts from treatment replicates, expressed as tags per million in log10 scale. Correlations between four independent technical replicates of EXPRSS Tag-seq (A) , made from same RNA sample; four independent biological replicates of EXPRSS Tag-seq (B) and <t>Nla</t> <t>III-DGE</t> (C) are presented. Pearson correlation of log10 transformed tag counts per million plus 1 is depicted at left hand top corner of each comparison. Right hand bottom corner indicates replicate number depicted on X and Y-axis, respectively. (D-E) Example of differential expression using reads aligned (small black arrows) to WRKY22 , a flg22 responsive gene are presented from control (D) and treatment (E) .
    Tag Profiling Sample Prep Kits, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 85/100, based on 3 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/tag profiling sample prep kits/product/Illumina Inc
    Average 85 stars, based on 3 article reviews
    Price from $9.99 to $1999.99
    tag profiling sample prep kits - by Bioz Stars, 2020-05
    85/100 stars
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    92
    Illumina Inc genome analyzer ii
    Higher reproducibility and better dynamics of differential expression detection using EXPRSS. (A-C) Pairwise scatter plots of gene counts from treatment replicates, expressed as tags per million in log10 scale. Correlations between four independent technical replicates of EXPRSS Tag-seq (A) , made from same RNA sample; four independent biological replicates of EXPRSS Tag-seq (B) and <t>Nla</t> <t>III-DGE</t> (C) are presented. Pearson correlation of log10 transformed tag counts per million plus 1 is depicted at left hand top corner of each comparison. Right hand bottom corner indicates replicate number depicted on X and Y-axis, respectively. (D-E) Example of differential expression using reads aligned (small black arrows) to WRKY22 , a flg22 responsive gene are presented from control (D) and treatment (E) .
    Genome Analyzer Ii, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 92/100, based on 7376 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/genome analyzer ii/product/Illumina Inc
    Average 92 stars, based on 7376 article reviews
    Price from $9.99 to $1999.99
    genome analyzer ii - by Bioz Stars, 2020-05
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    Image Search Results


    Higher reproducibility and better dynamics of differential expression detection using EXPRSS. (A-C) Pairwise scatter plots of gene counts from treatment replicates, expressed as tags per million in log10 scale. Correlations between four independent technical replicates of EXPRSS Tag-seq (A) , made from same RNA sample; four independent biological replicates of EXPRSS Tag-seq (B) and Nla III-DGE (C) are presented. Pearson correlation of log10 transformed tag counts per million plus 1 is depicted at left hand top corner of each comparison. Right hand bottom corner indicates replicate number depicted on X and Y-axis, respectively. (D-E) Example of differential expression using reads aligned (small black arrows) to WRKY22 , a flg22 responsive gene are presented from control (D) and treatment (E) .

    Journal: BMC Genomics

    Article Title: EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics

    doi: 10.1186/1471-2164-15-341

    Figure Lengend Snippet: Higher reproducibility and better dynamics of differential expression detection using EXPRSS. (A-C) Pairwise scatter plots of gene counts from treatment replicates, expressed as tags per million in log10 scale. Correlations between four independent technical replicates of EXPRSS Tag-seq (A) , made from same RNA sample; four independent biological replicates of EXPRSS Tag-seq (B) and Nla III-DGE (C) are presented. Pearson correlation of log10 transformed tag counts per million plus 1 is depicted at left hand top corner of each comparison. Right hand bottom corner indicates replicate number depicted on X and Y-axis, respectively. (D-E) Example of differential expression using reads aligned (small black arrows) to WRKY22 , a flg22 responsive gene are presented from control (D) and treatment (E) .

    Article Snippet: For Nla III-DGE ~13 million reads passing the Illumina quality filter were obtained of which ~10% were discarded as reads with “N”, below quality threshold, adapter only and shorter than 14 bp tag sequence.

    Techniques: Expressing, Transformation Assay

    Comparison of differential expression between EXPRSS, Nla III-DGE and Affymetrix ATH1 array. (A-B) Venn diagrams showing overlap of differential expression identified from the same RNA samples (EXPRSS and Nla III-DGE) and similar RNA sample (ATH1 microarray). Overlap of (A) sense transcripts (numbers in black - genes spotted on ATH1 array and numbers in red- genes not spotted on ATH1 array) (B) antisense transcripts identified by EXPRSS and Nla III-DGE. (C-D) Q-PCR confirmation of differential expression observed through EXPRSS. Three up-regulated genes (C) and five down-regulated genes (D) that are found differentially expressed with EXPRSS are verified with QPCR. Error bars indicate standard deviation from three biological replicates. FDR values are provided for EXPRSS log2 fold changes.

    Journal: BMC Genomics

    Article Title: EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics

    doi: 10.1186/1471-2164-15-341

    Figure Lengend Snippet: Comparison of differential expression between EXPRSS, Nla III-DGE and Affymetrix ATH1 array. (A-B) Venn diagrams showing overlap of differential expression identified from the same RNA samples (EXPRSS and Nla III-DGE) and similar RNA sample (ATH1 microarray). Overlap of (A) sense transcripts (numbers in black - genes spotted on ATH1 array and numbers in red- genes not spotted on ATH1 array) (B) antisense transcripts identified by EXPRSS and Nla III-DGE. (C-D) Q-PCR confirmation of differential expression observed through EXPRSS. Three up-regulated genes (C) and five down-regulated genes (D) that are found differentially expressed with EXPRSS are verified with QPCR. Error bars indicate standard deviation from three biological replicates. FDR values are provided for EXPRSS log2 fold changes.

    Article Snippet: For Nla III-DGE ~13 million reads passing the Illumina quality filter were obtained of which ~10% were discarded as reads with “N”, below quality threshold, adapter only and shorter than 14 bp tag sequence.

    Techniques: Expressing, Microarray, Polymerase Chain Reaction, Real-time Polymerase Chain Reaction, Standard Deviation

    Sensitivity of EXPRSS in differential expression detection for specific responses to treatment. (A-C) Venn diagram representing overlap of differential expression for flg22 treatment from four different experiments (Microarray on seedling, leaf, leaf disc and EXPRSS on leaf disc) (A) Up-regulated genes between the four methods are compared. (B) Down-regulated genes between the four methods are compared. (C) Depiction of the overlap among the sections of Venn diagram. Number under each experiment represents number of genes differentially expressed. (Numbers in black - genes spotted on ATH1 array and numbers in red- genes not spotted on ATH1 array) (D-E) Scatter plots showing fold change distribution for commonly detected genes between two experiments. (D) Comparison of log2 fold changes between leaf and seedling microarray shows more restricted dynamics on negative scale (~ − 3) than positive scale (~ + 7). (E) Similar comparison of log2 fold changes between leaf disc data from EXPRSS and Nla III-DGE showing more even distribution (−6 to +7).

    Journal: BMC Genomics

    Article Title: EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics

    doi: 10.1186/1471-2164-15-341

    Figure Lengend Snippet: Sensitivity of EXPRSS in differential expression detection for specific responses to treatment. (A-C) Venn diagram representing overlap of differential expression for flg22 treatment from four different experiments (Microarray on seedling, leaf, leaf disc and EXPRSS on leaf disc) (A) Up-regulated genes between the four methods are compared. (B) Down-regulated genes between the four methods are compared. (C) Depiction of the overlap among the sections of Venn diagram. Number under each experiment represents number of genes differentially expressed. (Numbers in black - genes spotted on ATH1 array and numbers in red- genes not spotted on ATH1 array) (D-E) Scatter plots showing fold change distribution for commonly detected genes between two experiments. (D) Comparison of log2 fold changes between leaf and seedling microarray shows more restricted dynamics on negative scale (~ − 3) than positive scale (~ + 7). (E) Similar comparison of log2 fold changes between leaf disc data from EXPRSS and Nla III-DGE showing more even distribution (−6 to +7).

    Article Snippet: For Nla III-DGE ~13 million reads passing the Illumina quality filter were obtained of which ~10% were discarded as reads with “N”, below quality threshold, adapter only and shorter than 14 bp tag sequence.

    Techniques: Expressing, Microarray