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  • 92
    ABM Inc miseq
    Miseq, supplied by ABM Inc, used in various techniques. Bioz Stars score: 92/100, based on 5 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/miseq/product/ABM Inc
    Average 92 stars, based on 5 article reviews
    Price from $9.99 to $1999.99
    miseq - by Bioz Stars, 2020-05
    92/100 stars
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    93
    fluidigm miseq
    Miseq, supplied by fluidigm, used in various techniques. Bioz Stars score: 93/100, based on 51 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/miseq/product/fluidigm
    Average 93 stars, based on 51 article reviews
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    miseq - by Bioz Stars, 2020-05
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    miseq  (Roche)
    93
    Roche miseq
    Total species and <t>MOTU</t> numbers of copepods in field-collected samples. MOTU numbers were calculated at 97 and 99% similarity thresholds in metagenetic analyses using both Illumina <t>MiSeq</t> and Roche 454 data.
    Miseq, supplied by Roche, used in various techniques. Bioz Stars score: 93/100, based on 253 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/miseq/product/Roche
    Average 93 stars, based on 253 article reviews
    Price from $9.99 to $1999.99
    miseq - by Bioz Stars, 2020-05
    93/100 stars
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    94
    Thermo Fisher miseq
    Annotated OTUs per platform at all taxonomic levels. Percentage (%) of annotated OTUs on each taxonomic level for both <t>Illumina</t> <t>MiSeq</t> (MiSeq) and Ion Torrent PGM (IT) sequencing platforms.
    Miseq, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 94/100, based on 775 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/miseq/product/Thermo Fisher
    Average 94 stars, based on 775 article reviews
    Price from $9.99 to $1999.99
    miseq - by Bioz Stars, 2020-05
    94/100 stars
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    99
    Illumina Inc illumina miseq miseq
    Annotated OTUs per platform at all taxonomic levels. Percentage (%) of annotated OTUs on each taxonomic level for both <t>Illumina</t> <t>MiSeq</t> (MiSeq) and Ion Torrent PGM (IT) sequencing platforms.
    Illumina Miseq Miseq, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 1036 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/illumina miseq miseq/product/Illumina Inc
    Average 99 stars, based on 1036 article reviews
    Price from $9.99 to $1999.99
    illumina miseq miseq - by Bioz Stars, 2020-05
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    94
    Pacific Biosciences miseq
    Box plots of alpha-diversity indices comparing 24 microbiomes from 12 paired samples sequenced in the <t>MiSeq</t> (16S_V4) and <t>PacBio</t> (whole 16S) platforms. The thick horizontal line within each box represents the median estimate.
    Miseq, supplied by Pacific Biosciences, used in various techniques. Bioz Stars score: 94/100, based on 448 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/miseq/product/Pacific Biosciences
    Average 94 stars, based on 448 article reviews
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    93
    RTLGenomics miseq
    Box plots of alpha-diversity indices comparing 24 microbiomes from 12 paired samples sequenced in the <t>MiSeq</t> (16S_V4) and <t>PacBio</t> (whole 16S) platforms. The thick horizontal line within each box represents the median estimate.
    Miseq, supplied by RTLGenomics, used in various techniques. Bioz Stars score: 93/100, based on 3 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/miseq/product/RTLGenomics
    Average 93 stars, based on 3 article reviews
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    miseq - by Bioz Stars, 2020-05
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    92
    Omega Bio-tek miseq
    Box plots of alpha-diversity indices comparing 24 microbiomes from 12 paired samples sequenced in the <t>MiSeq</t> (16S_V4) and <t>PacBio</t> (whole 16S) platforms. The thick horizontal line within each box represents the median estimate.
    Miseq, supplied by Omega Bio-tek, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/miseq/product/Omega Bio-tek
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    92
    Thermo Fisher illumina miseq
    Box plots of alpha-diversity indices comparing 24 microbiomes from 12 paired samples sequenced in the <t>MiSeq</t> (16S_V4) and <t>PacBio</t> (whole 16S) platforms. The thick horizontal line within each box represents the median estimate.
    Illumina Miseq, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 92/100, based on 38 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/illumina miseq/product/Thermo Fisher
    Average 92 stars, based on 38 article reviews
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    illumina miseq - by Bioz Stars, 2020-05
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    90
    Illumina Inc miseq analyzer
    Box plots of alpha-diversity indices comparing 24 microbiomes from 12 paired samples sequenced in the <t>MiSeq</t> (16S_V4) and <t>PacBio</t> (whole 16S) platforms. The thick horizontal line within each box represents the median estimate.
    Miseq Analyzer, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 6 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/miseq analyzer/product/Illumina Inc
    Average 90 stars, based on 6 article reviews
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    miseq analyzer - by Bioz Stars, 2020-05
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    89
    Illumina Inc miseq flowcell
    Box plots of alpha-diversity indices comparing 24 microbiomes from 12 paired samples sequenced in the <t>MiSeq</t> (16S_V4) and <t>PacBio</t> (whole 16S) platforms. The thick horizontal line within each box represents the median estimate.
    Miseq Flowcell, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 89/100, based on 57 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/miseq flowcell/product/Illumina Inc
    Average 89 stars, based on 57 article reviews
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    miseq flowcell - by Bioz Stars, 2020-05
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    92
    Illumina Inc miseq manual
    Box plots of alpha-diversity indices comparing 24 microbiomes from 12 paired samples sequenced in the <t>MiSeq</t> (16S_V4) and <t>PacBio</t> (whole 16S) platforms. The thick horizontal line within each box represents the median estimate.
    Miseq Manual, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 92/100, based on 14 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/miseq manual/product/Illumina Inc
    Average 92 stars, based on 14 article reviews
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    miseq manual - by Bioz Stars, 2020-05
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    89
    Illumina Inc miseq ngs
    Box plots of alpha-diversity indices comparing 24 microbiomes from 12 paired samples sequenced in the <t>MiSeq</t> (16S_V4) and <t>PacBio</t> (whole 16S) platforms. The thick horizontal line within each box represents the median estimate.
    Miseq Ngs, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 89/100, based on 50 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/miseq ngs/product/Illumina Inc
    Average 89 stars, based on 50 article reviews
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    Image Search Results


    Total species and MOTU numbers of copepods in field-collected samples. MOTU numbers were calculated at 97 and 99% similarity thresholds in metagenetic analyses using both Illumina MiSeq and Roche 454 data.

    Journal: PLoS ONE

    Article Title: Evaluation of metagenetic community analysis of planktonic copepods using Illumina MiSeq: Comparisons with morphological classification and metagenetic analysis using Roche 454

    doi: 10.1371/journal.pone.0181452

    Figure Lengend Snippet: Total species and MOTU numbers of copepods in field-collected samples. MOTU numbers were calculated at 97 and 99% similarity thresholds in metagenetic analyses using both Illumina MiSeq and Roche 454 data.

    Article Snippet: MOTU numbers with at least two sequence reads were 65 (MiSeq) and 42 (Roche 454) at a 97% similarity threshold.

    Techniques:

    MOTU numbers at different minimum abundance thresholds of sequence reads: Comparisons of mock community analysis using (A) Illumina MiSeq and (B) Roche 454, and analyses of field-collected samples using (C) Illumina MiSeq and (D) Roche 454. A 0.05% of total reads for a single sample is indicated by dashed lines. Effects of the abundance threshold on MOTU numbers were evaluated both at a 97 and 99% similarity threshold for MOTU clustering.

    Journal: PLoS ONE

    Article Title: Evaluation of metagenetic community analysis of planktonic copepods using Illumina MiSeq: Comparisons with morphological classification and metagenetic analysis using Roche 454

    doi: 10.1371/journal.pone.0181452

    Figure Lengend Snippet: MOTU numbers at different minimum abundance thresholds of sequence reads: Comparisons of mock community analysis using (A) Illumina MiSeq and (B) Roche 454, and analyses of field-collected samples using (C) Illumina MiSeq and (D) Roche 454. A 0.05% of total reads for a single sample is indicated by dashed lines. Effects of the abundance threshold on MOTU numbers were evaluated both at a 97 and 99% similarity threshold for MOTU clustering.

    Article Snippet: MOTU numbers with at least two sequence reads were 65 (MiSeq) and 42 (Roche 454) at a 97% similarity threshold.

    Techniques: Sequencing

    Annotated OTUs per platform at all taxonomic levels. Percentage (%) of annotated OTUs on each taxonomic level for both Illumina MiSeq (MiSeq) and Ion Torrent PGM (IT) sequencing platforms.

    Journal: Scientific Reports

    Article Title: Methodology challenges in studying human gut microbiota – effects of collection, storage, DNA extraction and next generation sequencing technologies

    doi: 10.1038/s41598-018-23296-4

    Figure Lengend Snippet: Annotated OTUs per platform at all taxonomic levels. Percentage (%) of annotated OTUs on each taxonomic level for both Illumina MiSeq (MiSeq) and Ion Torrent PGM (IT) sequencing platforms.

    Article Snippet: Illumina and Thermo platforms with their MiSeq and Ion Torrent (IT) Personal Genome Machine (PGM) benchtop sequencers are increasingly being used for 16S rRNA-based analyses of diverse bacterial populations , , , , .

    Techniques: Sequencing

    Annotated OTUs per platform at all taxonomic levels. Percentage (%) of annotated OTUs on each taxonomic level for both Illumina MiSeq (MiSeq) and Ion Torrent PGM (IT) sequencing platforms.

    Journal: Scientific Reports

    Article Title: Methodology challenges in studying human gut microbiota – effects of collection, storage, DNA extraction and next generation sequencing technologies

    doi: 10.1038/s41598-018-23296-4

    Figure Lengend Snippet: Annotated OTUs per platform at all taxonomic levels. Percentage (%) of annotated OTUs on each taxonomic level for both Illumina MiSeq (MiSeq) and Ion Torrent PGM (IT) sequencing platforms.

    Article Snippet: Faecal bacterial communities were profiled by 16S rRNA amplicon sequencing using two NGS platforms: Illumina MiSeq (MiSeq) and Ion Torrent PGM (IT).

    Techniques: Sequencing

    Plasmodium vivax chromosomal coverage following SWGA using primer set pvset1 (A) or pvset1920 (B). The base compositions of chromosomes 2 and 6 were visualized in Geneious (version 9.1) using the P. vivax Sal-1 reference genome; green and blue lines represent percentages of AT and GC content, respectively, plotted for 25-bp windows across the chromosome (scale shown above the graph). Shown in blue and red below are the corresponding MiSeq read coverage depths using primer sets pvset1 and pvset1920, respectively. Coverage plots were generated using IGVTools (version 2.3.40) and are shown on a log scale with maximum read depth indicated in the upper left corner of the plot.

    Journal: mBio

    Article Title: Selective Whole-Genome Amplification Is a Robust Method That Enables Scalable Whole-Genome Sequencing of Plasmodium vivax from Unprocessed Clinical Samples

    doi: 10.1128/mBio.02257-16

    Figure Lengend Snippet: Plasmodium vivax chromosomal coverage following SWGA using primer set pvset1 (A) or pvset1920 (B). The base compositions of chromosomes 2 and 6 were visualized in Geneious (version 9.1) using the P. vivax Sal-1 reference genome; green and blue lines represent percentages of AT and GC content, respectively, plotted for 25-bp windows across the chromosome (scale shown above the graph). Shown in blue and red below are the corresponding MiSeq read coverage depths using primer sets pvset1 and pvset1920, respectively. Coverage plots were generated using IGVTools (version 2.3.40) and are shown on a log scale with maximum read depth indicated in the upper left corner of the plot.

    Article Snippet: 10.1128/mBio.02257-16.1 FIG S1 Testing of SWGA primer sets on an unprocessed, P. vivax -infected blood sample. (A) Unamplified DNA (black) and DNA amplified with SWGA primer set pvset1 (blue) was sequenced on a MiSeq (Illumina).

    Techniques: Generated

    Testing of SWGA primer sets on DNA from an unprocessed, P. vivax -infected blood sample. (A) Unamplified DNA (black) and DNA amplified with SWGA primer set pvset1 (blue) or pvset1920 (red) was sequenced on a MiSeq (Illumina). The percentages of MiSeq reads that mapped to the P. vivax Sal-1 reference genome in Geneious (version 9.1) ( 39 ) were plotted for both unamplified and SWGA-amplified samples. (B) The 1× P. vivax genome coverage is shown relative to the total sequencing depth (in millions of base pairs sequenced) for samples subjected to SWGA with pvset1920 or pvset1 and for unamplified DNA.

    Journal: mBio

    Article Title: Selective Whole-Genome Amplification Is a Robust Method That Enables Scalable Whole-Genome Sequencing of Plasmodium vivax from Unprocessed Clinical Samples

    doi: 10.1128/mBio.02257-16

    Figure Lengend Snippet: Testing of SWGA primer sets on DNA from an unprocessed, P. vivax -infected blood sample. (A) Unamplified DNA (black) and DNA amplified with SWGA primer set pvset1 (blue) or pvset1920 (red) was sequenced on a MiSeq (Illumina). The percentages of MiSeq reads that mapped to the P. vivax Sal-1 reference genome in Geneious (version 9.1) ( 39 ) were plotted for both unamplified and SWGA-amplified samples. (B) The 1× P. vivax genome coverage is shown relative to the total sequencing depth (in millions of base pairs sequenced) for samples subjected to SWGA with pvset1920 or pvset1 and for unamplified DNA.

    Article Snippet: 10.1128/mBio.02257-16.1 FIG S1 Testing of SWGA primer sets on an unprocessed, P. vivax -infected blood sample. (A) Unamplified DNA (black) and DNA amplified with SWGA primer set pvset1 (blue) was sequenced on a MiSeq (Illumina).

    Techniques: Infection, Amplification, Sequencing

    A Large Number of 25% SNVs Are Present in the iPSC Genome (A) Variant allele frequencies for SNV candidates screened using high-coverage, whole-genome sequencing data. The histogram indicates the variant allele frequencies by sequence coverage. (B) Schematic representation of the variant allele frequency test by amplicon sequencing. The targeted variants were amplified by PCR and assessed by deep sequencing using an Illumina MiSeq. (C) Variant allele frequency plots of 25% SNV candidates in the iPS136 clone. The plots show variant allele frequencies by sequence coverage of amplicon sequencing. The number of SNV candidates examined is indicated in parentheses. (D) Verification of candidate 25% SNVs. See also Figure S3 and Table S1 .

    Journal: Stem Cell Reports

    Article Title: Induced Pluripotent Stem Cell Generation-Associated Point Mutations Arise during the Initial Stages of the Conversion of These Cells

    doi: 10.1016/j.stemcr.2013.11.006

    Figure Lengend Snippet: A Large Number of 25% SNVs Are Present in the iPSC Genome (A) Variant allele frequencies for SNV candidates screened using high-coverage, whole-genome sequencing data. The histogram indicates the variant allele frequencies by sequence coverage. (B) Schematic representation of the variant allele frequency test by amplicon sequencing. The targeted variants were amplified by PCR and assessed by deep sequencing using an Illumina MiSeq. (C) Variant allele frequency plots of 25% SNV candidates in the iPS136 clone. The plots show variant allele frequencies by sequence coverage of amplicon sequencing. The number of SNV candidates examined is indicated in parentheses. (D) Verification of candidate 25% SNVs. See also Figure S3 and Table S1 .

    Article Snippet: PCR products were mixed and purified using the MinElute PCR Purification Kit (QIAGEN), and the sequences were determined using the Ion Torrent PGM sequencer with the Ion 316 chip (Life Technologies) and MiSeq sequencer (Illumina).

    Techniques: Variant Assay, Sequencing, Amplification, Polymerase Chain Reaction

    Box plots of alpha-diversity indices comparing 24 microbiomes from 12 paired samples sequenced in the MiSeq (16S_V4) and PacBio (whole 16S) platforms. The thick horizontal line within each box represents the median estimate.

    Journal: Journal of microbiological methods

    Article Title: Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum

    doi: 10.1016/j.mimet.2016.09.002

    Figure Lengend Snippet: Box plots of alpha-diversity indices comparing 24 microbiomes from 12 paired samples sequenced in the MiSeq (16S_V4) and PacBio (whole 16S) platforms. The thick horizontal line within each box represents the median estimate.

    Article Snippet: MiSeq and PacBio sequencing platforms generate significant discordance in microbial taxonomic profiles and alpha-diversity in CF sputum microbiomes.

    Techniques: