microarray equipment Search Results


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  • 99
    Thermo Fisher slide a lyzer mini dialysis device
    Slide A Lyzer Mini Dialysis Device, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 99/100, based on 292 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    99
    Millipore dna microarray analysis
    Hepatic gene expression levels significantly suppressed by β-cryptoxanthin in NASH. C57BL/6J mice were fed a standard chow (NC), a CL diet (CL), or a CL diet containing 0.003% β-cryptoxanthin (CL+CX) for 12 weeks. Hepatic gene expression was determined using a <t>DNA</t> <t>microarray</t> (Genopal, Mitsubishi Rayon). The degree of change (fold) was calculated compared with the livers of the control mice (NC). Data are expressed as the arithmetic mean ± SEM of 5 mice in each group. Different superscripts indicate significant differences (p
    Dna Microarray Analysis, supplied by Millipore, used in various techniques. Bioz Stars score: 99/100, based on 13 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    92
    Thermo Fisher microarray equipment
    Sub-lethal YM-155 concentration setup for WT <t>microarray.</t> Optimum concentration was 83 ng/mL which at 8 h showed little effects on viability, but was high enough to trigger complete cell death over the next 16 h. The data represents cell viability as % untreated controls and are expressed as the Mean±S.E.M, n=4. Significance of differences from the control values were evaluated using a one-way ANOVA, followed by a Tukey-Post Hoc Test, *p
    Microarray Equipment, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 92/100, based on 17 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/microarray equipment/product/Thermo Fisher
    Average 92 stars, based on 17 article reviews
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    86
    Thermo Fisher dna microarray equipment
    Sub-lethal YM-155 concentration setup for WT <t>microarray.</t> Optimum concentration was 83 ng/mL which at 8 h showed little effects on viability, but was high enough to trigger complete cell death over the next 16 h. The data represents cell viability as % untreated controls and are expressed as the Mean±S.E.M, n=4. Significance of differences from the control values were evaluated using a one-way ANOVA, followed by a Tukey-Post Hoc Test, *p
    Dna Microarray Equipment, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    90
    Agilent technologies microarray equipment
    Diagram of variables investigated in the current experiment. Linker length: the distance from the <t>microarray</t> surface was varied; linker identity: nucleobase (adenine, cytosine, guanine, or thymine) was used to tether aptamers to the surface; direct labeling method: fluorescent reporter dye conjugated directly to the target molecule is incubated with aptamer microarray; indirect labeling method: biotinylated-target is added to microarray, followed by a short dye-streptavidin incubation with aptamer microarray. Following incubation, all microarrays were washed and imaged and the data was extracted in order to link fluorescence intensity location with aptamer sequence. Nucleobase structures were created using VIDA, part of OpenEye software.
    Microarray Equipment, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 175 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    87
    Agilent technologies microarray hybridization equipment
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Microarray Hybridization Equipment, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 87/100, based on 17 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    91
    Agilent technologies 2100 bionalyzer equipment
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    2100 Bionalyzer Equipment, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 91/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    88
    ImmunArray ichip microarray device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Ichip Microarray Device, supplied by ImmunArray, used in various techniques. Bioz Stars score: 88/100, based on 3 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    93
    Thermo Fisher nanodrop 1000 equipment
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Nanodrop 1000 Equipment, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 93/100, based on 3 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    86
    GE Healthcare generation iii microarray spotter device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Generation Iii Microarray Spotter Device, supplied by GE Healthcare, used in various techniques. Bioz Stars score: 86/100, based on 7 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    95
    Agilent technologies g2505b microarray scanning device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    G2505b Microarray Scanning Device, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 95/100, based on 7 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    86
    Agilent technologies 1m cnv microarray hybridization device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    1m Cnv Microarray Hybridization Device, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 86/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    91
    BioRobotics Ltd micro grind ii genechip spotting equipment
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Micro Grind Ii Genechip Spotting Equipment, supplied by BioRobotics Ltd, used in various techniques. Bioz Stars score: 91/100, based on 2 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    95
    Agilent technologies device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Device, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 95/100, based on 51 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    91
    Meiwafosis Co Ltd soft plasma etching equipment
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Soft Plasma Etching Equipment, supplied by Meiwafosis Co Ltd, used in various techniques. Bioz Stars score: 91/100, based on 2 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    92
    Molecular Devices LLC genepix 4000b microarray scanner molecular device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Genepix 4000b Microarray Scanner Molecular Device, supplied by Molecular Devices LLC, used in various techniques. Bioz Stars score: 92/100, based on 13 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    91
    Agilent technologies bioanalyzer agilent capillary electrophoresis equipment
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Bioanalyzer Agilent Capillary Electrophoresis Equipment, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 91/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    85
    ImpediMed Limited impedimed sfb7 device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Impedimed Sfb7 Device, supplied by ImpediMed Limited, used in various techniques. Bioz Stars score: 85/100, based on 2 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    92
    Tecan Systems hs400 pro device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Hs400 Pro Device, supplied by Tecan Systems, used in various techniques. Bioz Stars score: 92/100, based on 9 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    94
    Abbott Laboratories arraymate reading device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Arraymate Reading Device, supplied by Abbott Laboratories, used in various techniques. Bioz Stars score: 94/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    80
    Molecular Devices LLC genepix 4000b device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Genepix 4000b Device, supplied by Molecular Devices LLC, used in various techniques. Bioz Stars score: 80/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    94
    PerkinElmer device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Device, supplied by PerkinElmer, used in various techniques. Bioz Stars score: 94/100, based on 30 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Thermo Fisher device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Device, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 97/100, based on 216 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Collaborative Drug Discovery Inc charge coupled device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Charge Coupled Device, supplied by Collaborative Drug Discovery Inc, used in various techniques. Bioz Stars score: 99/100, based on 19471 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    85
    Alphelys tissue arrayer device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Tissue Arrayer Device, supplied by Alphelys, used in various techniques. Bioz Stars score: 85/100, based on 5 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    94
    Alphelys tissue array device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Tissue Array Device, supplied by Alphelys, used in various techniques. Bioz Stars score: 94/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    94
    Texas Instruments digital micro mirror device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Digital Micro Mirror Device, supplied by Texas Instruments, used in various techniques. Bioz Stars score: 94/100, based on 37 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    92
    Leica Biosystems aperio slide scanning device
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Aperio Slide Scanning Device, supplied by Leica Biosystems, used in various techniques. Bioz Stars score: 92/100, based on 6 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    99
    Agilent technologies microarrays
    Schematization of approaches used to analyze the <t>microarray</t> data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially
    Microarrays, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 99/100, based on 10970 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    94
    Thermo Fisher microarray analysis microarrays
    EPS conditioned medium alters gene expression in FAO hepatocytes and primary rat hepatocytes. A : Affymetrix <t>microarray</t> analysis of FAO hepatocytes stimulated with C2C12 conditioned media (CM). Four individual experiments were performed and the genes significantly (p
    Microarray Analysis Microarrays, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 94/100, based on 35 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    85
    Collaborative Drug Discovery Inc noncooled charge coupled device
    EPS conditioned medium alters gene expression in FAO hepatocytes and primary rat hepatocytes. A : Affymetrix <t>microarray</t> analysis of FAO hepatocytes stimulated with C2C12 conditioned media (CM). Four individual experiments were performed and the genes significantly (p
    Noncooled Charge Coupled Device, supplied by Collaborative Drug Discovery Inc, used in various techniques. Bioz Stars score: 85/100, based on 15 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Image Search Results


    Hepatic gene expression levels significantly suppressed by β-cryptoxanthin in NASH. C57BL/6J mice were fed a standard chow (NC), a CL diet (CL), or a CL diet containing 0.003% β-cryptoxanthin (CL+CX) for 12 weeks. Hepatic gene expression was determined using a DNA microarray (Genopal, Mitsubishi Rayon). The degree of change (fold) was calculated compared with the livers of the control mice (NC). Data are expressed as the arithmetic mean ± SEM of 5 mice in each group. Different superscripts indicate significant differences (p

    Journal: PLoS ONE

    Article Title: ?-Cryptoxanthin Alleviates Diet-Induced Nonalcoholic Steatohepatitis by Suppressing Inflammatory Gene Expression in Mice

    doi: 10.1371/journal.pone.0098294

    Figure Lengend Snippet: Hepatic gene expression levels significantly suppressed by β-cryptoxanthin in NASH. C57BL/6J mice were fed a standard chow (NC), a CL diet (CL), or a CL diet containing 0.003% β-cryptoxanthin (CL+CX) for 12 weeks. Hepatic gene expression was determined using a DNA microarray (Genopal, Mitsubishi Rayon). The degree of change (fold) was calculated compared with the livers of the control mice (NC). Data are expressed as the arithmetic mean ± SEM of 5 mice in each group. Different superscripts indicate significant differences (p

    Article Snippet: DNA microarray analysis Total RNA was isolated from the frozen liver using the GenElute Mammalian Total RNA Miniprep kit (Sigma-Aldrich Japan, Tokyo, Japan).

    Techniques: Expressing, Mouse Assay, Microarray

    Sub-lethal YM-155 concentration setup for WT microarray. Optimum concentration was 83 ng/mL which at 8 h showed little effects on viability, but was high enough to trigger complete cell death over the next 16 h. The data represents cell viability as % untreated controls and are expressed as the Mean±S.E.M, n=4. Significance of differences from the control values were evaluated using a one-way ANOVA, followed by a Tukey-Post Hoc Test, *p

    Journal: Cancer Genomics & Proteomics

    Article Title: Effects of Sepantronium Bromide (YM-155) on the Whole Transcriptome of MDA-MB-231 Cells: Highlight on Impaired ATR/ATM Fanconi Anemia DNA Damage Response

    doi: 10.21873/cgp.20083

    Figure Lengend Snippet: Sub-lethal YM-155 concentration setup for WT microarray. Optimum concentration was 83 ng/mL which at 8 h showed little effects on viability, but was high enough to trigger complete cell death over the next 16 h. The data represents cell viability as % untreated controls and are expressed as the Mean±S.E.M, n=4. Significance of differences from the control values were evaluated using a one-way ANOVA, followed by a Tukey-Post Hoc Test, *p

    Article Snippet: All microarray equipment, reagents and materials were purchased from Affymetrix/ Thermo Fisher (Waltham, MA, USA).

    Techniques: Concentration Assay, Microarray

    Survivin mRNA transcript change in YM-155 treated cells 8 h (83 ng/mL) and 20 h (14.6 ng/mL). The data represent raw data triplicate microarray spot values by intensity presented as bi-weighted average Signal (log2) for the BIRC5/baculoviral IAP repeat containing 5 gene.

    Journal: Cancer Genomics & Proteomics

    Article Title: Effects of Sepantronium Bromide (YM-155) on the Whole Transcriptome of MDA-MB-231 Cells: Highlight on Impaired ATR/ATM Fanconi Anemia DNA Damage Response

    doi: 10.21873/cgp.20083

    Figure Lengend Snippet: Survivin mRNA transcript change in YM-155 treated cells 8 h (83 ng/mL) and 20 h (14.6 ng/mL). The data represent raw data triplicate microarray spot values by intensity presented as bi-weighted average Signal (log2) for the BIRC5/baculoviral IAP repeat containing 5 gene.

    Article Snippet: All microarray equipment, reagents and materials were purchased from Affymetrix/ Thermo Fisher (Waltham, MA, USA).

    Techniques: Microarray

    Diagram of variables investigated in the current experiment. Linker length: the distance from the microarray surface was varied; linker identity: nucleobase (adenine, cytosine, guanine, or thymine) was used to tether aptamers to the surface; direct labeling method: fluorescent reporter dye conjugated directly to the target molecule is incubated with aptamer microarray; indirect labeling method: biotinylated-target is added to microarray, followed by a short dye-streptavidin incubation with aptamer microarray. Following incubation, all microarrays were washed and imaged and the data was extracted in order to link fluorescence intensity location with aptamer sequence. Nucleobase structures were created using VIDA, part of OpenEye software.

    Journal: Journal of Nucleic Acids

    Article Title: Microarrays as Model Biosensor Platforms to Investigate the Structure and Affinity of Aptamers

    doi: 10.1155/2016/9718612

    Figure Lengend Snippet: Diagram of variables investigated in the current experiment. Linker length: the distance from the microarray surface was varied; linker identity: nucleobase (adenine, cytosine, guanine, or thymine) was used to tether aptamers to the surface; direct labeling method: fluorescent reporter dye conjugated directly to the target molecule is incubated with aptamer microarray; indirect labeling method: biotinylated-target is added to microarray, followed by a short dye-streptavidin incubation with aptamer microarray. Following incubation, all microarrays were washed and imaged and the data was extracted in order to link fluorescence intensity location with aptamer sequence. Nucleobase structures were created using VIDA, part of OpenEye software.

    Article Snippet: Microarray equipment is as follows: custom 8×15k and 1×1M DNA microarrays, 8×15k and 1×1M gasket slides, ozone barrier slides, hybridization chambers, scanner cassettes, hybridization oven, and High-resolution Microarray Scanner (all Agilent), Slide rack and wash dishes (Shandon), and Kimtech polypropylene wipes (Kimberly-Clark).

    Techniques: Microarray, Labeling, Incubation, Fluorescence, Sequencing, Software

    Confirmation of microarray results by qPCR. Comparison of gene expression results obtained with qPCR and microarrays. Log 2 -ER of four genes were compared (n = 8, plotted as letters; a = radical s-adenosyl methionine domain-containing protein 2 ( rsad2 / viperin ), b = interferon-induced protein with tetratricopeptide repeats 5 ( ifit 5 ), c = retinoic acid inducible gene I ( rigI ), d = barrier to autointegration factor ( baf )). The dashed black line represents the regression function of the measured values. The regression model, correlation coefficient and p-value are shown in the graph.

    Journal: BMC Genomics

    Article Title: Comparison of Atlantic salmon individuals with different outcomes of cardiomyopathy syndrome (CMS)

    doi: 10.1186/1471-2164-13-205

    Figure Lengend Snippet: Confirmation of microarray results by qPCR. Comparison of gene expression results obtained with qPCR and microarrays. Log 2 -ER of four genes were compared (n = 8, plotted as letters; a = radical s-adenosyl methionine domain-containing protein 2 ( rsad2 / viperin ), b = interferon-induced protein with tetratricopeptide repeats 5 ( ifit 5 ), c = retinoic acid inducible gene I ( rigI ), d = barrier to autointegration factor ( baf )). The dashed black line represents the regression function of the measured values. The regression model, correlation coefficient and p-value are shown in the graph.

    Article Snippet: Microarray hybridization and data analysis Unless specified otherwise, all reagents and equipment used for microarray analyses were purchased from Agilent Technologies and used according to manufacturer’s protocol.

    Techniques: Microarray, Real-time Polymerase Chain Reaction, Expressing

    Gene expression of selected markers of late pathology. Real-time qPCR expression of four genes identified as pathology markers from microarrays in an extended number of individuals eight weeks post-infection. Gene abbreviations are; tnf-11b : tumor necrosis factor receptor superfamily member 11b , cd274 : programmed cell death ligand 1 , gzmA : granzyme A , tnf-d : tumor necrosis factor decoy receptor . The gene expression ratios are shown as boxplots based on nine HR fish (red) and ten LR fish (green) against the average of control fish. Values of the fish used in the microarray experiments are highlighted with dots and colored according to their histopathology score level (see Figure 1 ). Boxes represent 50% of the values, while black bars mark the median log-ER. Whiskers indicate the maximum length of 1.5 times the box length. Significance levels between all HR and LR fish are indicated on top of the plot ( t -test on log-transformed values, ** = p

    Journal: BMC Genomics

    Article Title: Comparison of Atlantic salmon individuals with different outcomes of cardiomyopathy syndrome (CMS)

    doi: 10.1186/1471-2164-13-205

    Figure Lengend Snippet: Gene expression of selected markers of late pathology. Real-time qPCR expression of four genes identified as pathology markers from microarrays in an extended number of individuals eight weeks post-infection. Gene abbreviations are; tnf-11b : tumor necrosis factor receptor superfamily member 11b , cd274 : programmed cell death ligand 1 , gzmA : granzyme A , tnf-d : tumor necrosis factor decoy receptor . The gene expression ratios are shown as boxplots based on nine HR fish (red) and ten LR fish (green) against the average of control fish. Values of the fish used in the microarray experiments are highlighted with dots and colored according to their histopathology score level (see Figure 1 ). Boxes represent 50% of the values, while black bars mark the median log-ER. Whiskers indicate the maximum length of 1.5 times the box length. Significance levels between all HR and LR fish are indicated on top of the plot ( t -test on log-transformed values, ** = p

    Article Snippet: Microarray hybridization and data analysis Unless specified otherwise, all reagents and equipment used for microarray analyses were purchased from Agilent Technologies and used according to manufacturer’s protocol.

    Techniques: Expressing, Real-time Polymerase Chain Reaction, Infection, Fluorescence In Situ Hybridization, Microarray, Histopathology, Transformation Assay

    Schematization of approaches used to analyze the microarray data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially

    Journal: American Journal of Physiology - Gastrointestinal and Liver Physiology

    Article Title: Activation of two distinct Sox9-EGFP-expressing intestinal stem cell populations during crypt regeneration after irradiation

    doi: 10.1152/ajpgi.00519.2011

    Figure Lengend Snippet: Schematization of approaches used to analyze the microarray data. A : analysis approach used to identify new putative Sox9-EGFP Low intestinal epithelial stem cell (ISC) biomarkers. Briefly, statistical analysis identified genes significantly differentially

    Article Snippet: Hybridization of the microarrays was performed by use of Agilent Microarray Hybridization equipment and protocol.

    Techniques: Microarray

    EPS conditioned medium alters gene expression in FAO hepatocytes and primary rat hepatocytes. A : Affymetrix microarray analysis of FAO hepatocytes stimulated with C2C12 conditioned media (CM). Four individual experiments were performed and the genes significantly (p

    Journal: Scientific Reports

    Article Title: Electric Pulse Stimulation of Myotubes as an In Vitro Exercise Model: Cell-Mediated and Non-Cell-Mediated Effects

    doi: 10.1038/srep10944

    Figure Lengend Snippet: EPS conditioned medium alters gene expression in FAO hepatocytes and primary rat hepatocytes. A : Affymetrix microarray analysis of FAO hepatocytes stimulated with C2C12 conditioned media (CM). Four individual experiments were performed and the genes significantly (p

    Article Snippet: Affymetrix microarray Microarray analysis was performed on RNA of FAO hepatocytes stimulated with C2C12 CM for 2 and 16 hours.

    Techniques: Expressing, Microarray

    Differentially Expressed Genes on Soybean Chromosomes . Genes identified as differentially expressed in the microarray experiment have been aligned on the 7X build of the soybean genome, assembled into chromosomes. Each horizontal line represents one gene; longer lines represent multiple genes. Lines to the left of the chromosome are genes in Clark; lines to the right of the chromosome are genes in IsoClark. Open boxes on the chromosomes represent previously identified iron QTL regions. Clusters of differentially expressed genes are apparent throughout the genome.

    Journal: BMC Genomics

    Article Title: Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response

    doi: 10.1186/1471-2164-10-376

    Figure Lengend Snippet: Differentially Expressed Genes on Soybean Chromosomes . Genes identified as differentially expressed in the microarray experiment have been aligned on the 7X build of the soybean genome, assembled into chromosomes. Each horizontal line represents one gene; longer lines represent multiple genes. Lines to the left of the chromosome are genes in Clark; lines to the right of the chromosome are genes in IsoClark. Open boxes on the chromosomes represent previously identified iron QTL regions. Clusters of differentially expressed genes are apparent throughout the genome.

    Article Snippet: The sequences of transcripts identified as differentially expressed by microarray analysis (see above) were obtained from the Affymetrix® website http://www.affymetrix.com .

    Techniques: Microarray