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  • 86
    Agilent technologies 60 mer oligo microarray processing protocol
    60 Mer Oligo Microarray Processing Protocol, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/60 mer oligo microarray processing protocol/product/Agilent technologies
    Average 86 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    60 mer oligo microarray processing protocol - by Bioz Stars, 2021-06
    86/100 stars
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    86
    Illumina Inc k mers
    K Mers, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/k mers/product/Illumina Inc
    Average 86 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    k mers - by Bioz Stars, 2021-06
    86/100 stars
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    94
    Bruker Corporation 11 mer 3 t tba
    Representation of the 3D structure of the <t>TBA</t> DNA G-quadruplex (A, B) (PDB ID: 1QDF) and of the G-triplex conformation of the <t>11-mer-3′-t-TBA</t> fragment predicted by metadynamics calculation (C, D) ( 17 ). The four GG tracts of TBA are displayed with different color: G1-G2 in blue, G5-G6 in green, G10-G11 in red and G14-G15 (for TBA only) in yellow.
    11 Mer 3 T Tba, supplied by Bruker Corporation, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/11 mer 3 t tba/product/Bruker Corporation
    Average 94 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    11 mer 3 t tba - by Bioz Stars, 2021-06
    94/100 stars
      Buy from Supplier

    86
    GraphPad Prism Inc mers cov
    CAI and RCDI of CDS sequences of human respiratory coronaviruses. A- Boxplot of CAI values of CDS sequences of <t>MERS-CoV,</t> SARS-CoV and SARS-CoV-2. B- Boxplot of RCDI values of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. C- Correlation between RCDI and CAI, GC3 and ENC in MERS-CoV genome. D- Correlation between RCDI and CAI, GC3 and ENC in SARS-CoV genome. E- Correlation between RCDI and CAI, GC3 and ENC in SARS-CoV-2 genome.
    Mers Cov, supplied by GraphPad Prism Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/mers cov/product/GraphPad Prism Inc
    Average 86 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    mers cov - by Bioz Stars, 2021-06
    86/100 stars
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    N/A
    Full length Clone DNA of MERS CoV NCoV Novel coronavirus Nucleoprotein NP with C terminal OFPSpark tag
      Buy from Supplier

    N/A
    Source HEK293 SARS Coronavirus is an enveloped virus containing three outer structural proteins namely the membrane M envelope E and spike S proteins Spike S glycoprotein of the virus interacts
      Buy from Supplier

    N/A
    Nucleocapsid protein is a most abundant protein of coronavirus Nucleocapsid protein is a highly immunogenic phosphoprotein also implicated in viral genome replication and in modulating cell signaling pathways While screening
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    N/A
    Source Escherichia Coli Recombinant SARS MERS Spike S1 is a peptide from amino acids 56 295 of spike protein S1 produced in E coli and fused to a 6xHis tag
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    Image Search Results


    Representation of the 3D structure of the TBA DNA G-quadruplex (A, B) (PDB ID: 1QDF) and of the G-triplex conformation of the 11-mer-3′-t-TBA fragment predicted by metadynamics calculation (C, D) ( 17 ). The four GG tracts of TBA are displayed with different color: G1-G2 in blue, G5-G6 in green, G10-G11 in red and G14-G15 (for TBA only) in yellow.

    Journal: Nucleic Acids Research

    Article Title: G-triplex structure and formation propensity

    doi: 10.1093/nar/gku1084

    Figure Lengend Snippet: Representation of the 3D structure of the TBA DNA G-quadruplex (A, B) (PDB ID: 1QDF) and of the G-triplex conformation of the 11-mer-3′-t-TBA fragment predicted by metadynamics calculation (C, D) ( 17 ). The four GG tracts of TBA are displayed with different color: G1-G2 in blue, G5-G6 in green, G10-G11 in red and G14-G15 (for TBA only) in yellow.

    Article Snippet: In conclusion, the experimental structure of 11-mer-3′-t-TBA proves the presence and the stability of the G-triplex folding predicted by metadynamics calculations.

    Techniques:

    Stereo view representation (crossed eyes) of the family of 10 structures of 11-mer-3′-t-TBA with lowest XPLOR-NIH energy, and after AMBER rMDs (A). The member of the family closest to the mean structure is shown in panel (B) as cartoon. The corresponding family of structures minimized in the presence of the potassium ion is shown in panel (C). The member of the family bearing the potassium ion and closest to the mean structure is shown in panel (D) as cartoon. The potassium ion is shown as a violet sphere.

    Journal: Nucleic Acids Research

    Article Title: G-triplex structure and formation propensity

    doi: 10.1093/nar/gku1084

    Figure Lengend Snippet: Stereo view representation (crossed eyes) of the family of 10 structures of 11-mer-3′-t-TBA with lowest XPLOR-NIH energy, and after AMBER rMDs (A). The member of the family closest to the mean structure is shown in panel (B) as cartoon. The corresponding family of structures minimized in the presence of the potassium ion is shown in panel (C). The member of the family bearing the potassium ion and closest to the mean structure is shown in panel (D) as cartoon. The potassium ion is shown as a violet sphere.

    Article Snippet: In conclusion, the experimental structure of 11-mer-3′-t-TBA proves the presence and the stability of the G-triplex folding predicted by metadynamics calculations.

    Techniques:

    Representation of the 3D structure of the TBA DNA G-quadruplex (A, B) (PDB ID: 1QDF) and of the experimental structure of the 11-mer-3′-t-TBA fragment (C, D) (present work). The four GG tracts of TBA are displayed with different color: G1-G2 in blue, G5-G6 in green, G10-G11 in red and G14-G15 (for TBA only) in yellow.

    Journal: Nucleic Acids Research

    Article Title: G-triplex structure and formation propensity

    doi: 10.1093/nar/gku1084

    Figure Lengend Snippet: Representation of the 3D structure of the TBA DNA G-quadruplex (A, B) (PDB ID: 1QDF) and of the experimental structure of the 11-mer-3′-t-TBA fragment (C, D) (present work). The four GG tracts of TBA are displayed with different color: G1-G2 in blue, G5-G6 in green, G10-G11 in red and G14-G15 (for TBA only) in yellow.

    Article Snippet: In conclusion, the experimental structure of 11-mer-3′-t-TBA proves the presence and the stability of the G-triplex folding predicted by metadynamics calculations.

    Techniques:

    31 P- 1 H HSQC (top) and 31 P- 1 H COSY (bottom) of 11-mer-3′-t-TBA at 600 MHz (proton Larmor frequency), and 274K.

    Journal: Nucleic Acids Research

    Article Title: G-triplex structure and formation propensity

    doi: 10.1093/nar/gku1084

    Figure Lengend Snippet: 31 P- 1 H HSQC (top) and 31 P- 1 H COSY (bottom) of 11-mer-3′-t-TBA at 600 MHz (proton Larmor frequency), and 274K.

    Article Snippet: In conclusion, the experimental structure of 11-mer-3′-t-TBA proves the presence and the stability of the G-triplex folding predicted by metadynamics calculations.

    Techniques:

    CAI and RCDI of CDS sequences of human respiratory coronaviruses. A- Boxplot of CAI values of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. B- Boxplot of RCDI values of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. C- Correlation between RCDI and CAI, GC3 and ENC in MERS-CoV genome. D- Correlation between RCDI and CAI, GC3 and ENC in SARS-CoV genome. E- Correlation between RCDI and CAI, GC3 and ENC in SARS-CoV-2 genome.

    Journal: Infection, Genetics and Evolution

    Article Title: Deciphering the co-adaptation of codon usage between respiratory coronaviruses and their human host uncovers candidate therapeutics for COVID-19

    doi: 10.1016/j.meegid.2020.104471

    Figure Lengend Snippet: CAI and RCDI of CDS sequences of human respiratory coronaviruses. A- Boxplot of CAI values of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. B- Boxplot of RCDI values of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. C- Correlation between RCDI and CAI, GC3 and ENC in MERS-CoV genome. D- Correlation between RCDI and CAI, GC3 and ENC in SARS-CoV genome. E- Correlation between RCDI and CAI, GC3 and ENC in SARS-CoV-2 genome.

    Article Snippet: The slopes of the regression equations were 1.029, 0.992 and 2.002 for MERS-CoV, SARS-CoV and SARS-CoV-2, respectively, suggesting that the relative neutrality (mutation pressure) was 10.29%, 9.92% and 20.02% for MERS-CoV, SARS-CoV and SARS-CoV-2 compared to relative natural selection constraints on GC3.

    Techniques:

    Correspondence analysis (CA) of the CDS sequences of human coronaviruses based on RSCU values. A- Plot showing the distribution of codons based on the first and second axes obtained from CA of RSCU values in MERS-CoV. B- Plot showing the distribution of genes based on the first and second axes obtained from CA of RSCU values in MERS-CoV. C- Plot showing the distribution of codons based on the first and second axes obtained from CA of RSCU values in SARS-CoV. D- Plot showing the distribution of genes based on the first and second axes obtained from CA of RSCU values in SARS-CoV. E- Plot showing the distribution of codons based on the first and second axes obtained from CA of RSCU values in SARS-CoV-2. F- Plot showing the distribution of genes based on the first and second axes obtained from CA of RSCU values in SARS-CoV-2.

    Journal: Infection, Genetics and Evolution

    Article Title: Deciphering the co-adaptation of codon usage between respiratory coronaviruses and their human host uncovers candidate therapeutics for COVID-19

    doi: 10.1016/j.meegid.2020.104471

    Figure Lengend Snippet: Correspondence analysis (CA) of the CDS sequences of human coronaviruses based on RSCU values. A- Plot showing the distribution of codons based on the first and second axes obtained from CA of RSCU values in MERS-CoV. B- Plot showing the distribution of genes based on the first and second axes obtained from CA of RSCU values in MERS-CoV. C- Plot showing the distribution of codons based on the first and second axes obtained from CA of RSCU values in SARS-CoV. D- Plot showing the distribution of genes based on the first and second axes obtained from CA of RSCU values in SARS-CoV. E- Plot showing the distribution of codons based on the first and second axes obtained from CA of RSCU values in SARS-CoV-2. F- Plot showing the distribution of genes based on the first and second axes obtained from CA of RSCU values in SARS-CoV-2.

    Article Snippet: The slopes of the regression equations were 1.029, 0.992 and 2.002 for MERS-CoV, SARS-CoV and SARS-CoV-2, respectively, suggesting that the relative neutrality (mutation pressure) was 10.29%, 9.92% and 20.02% for MERS-CoV, SARS-CoV and SARS-CoV-2 compared to relative natural selection constraints on GC3.

    Techniques:

    Similarity index and PR2-bias plot of CDS sequences of the human respiratory coronaviruses. A-Similarity index of human respiratory coronaviruses relative to their host. B- PR2-bias plot of MERS-CoV CDS sequences. C- PR2-bias plot of SARS-CoV CDS sequences. D- PR2-bias plot of SARS-CoV-2 CDS sequences. The PR2-bias plot was based on GC bias [G3/(G3 + C3)] and AT bias [A3/(A3 + T3)] in the third codon position. The two solid red lines represent both coordinates (ordinate and abscissa) equal to 0.5, where A = T and G = C. (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)

    Journal: Infection, Genetics and Evolution

    Article Title: Deciphering the co-adaptation of codon usage between respiratory coronaviruses and their human host uncovers candidate therapeutics for COVID-19

    doi: 10.1016/j.meegid.2020.104471

    Figure Lengend Snippet: Similarity index and PR2-bias plot of CDS sequences of the human respiratory coronaviruses. A-Similarity index of human respiratory coronaviruses relative to their host. B- PR2-bias plot of MERS-CoV CDS sequences. C- PR2-bias plot of SARS-CoV CDS sequences. D- PR2-bias plot of SARS-CoV-2 CDS sequences. The PR2-bias plot was based on GC bias [G3/(G3 + C3)] and AT bias [A3/(A3 + T3)] in the third codon position. The two solid red lines represent both coordinates (ordinate and abscissa) equal to 0.5, where A = T and G = C. (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)

    Article Snippet: The slopes of the regression equations were 1.029, 0.992 and 2.002 for MERS-CoV, SARS-CoV and SARS-CoV-2, respectively, suggesting that the relative neutrality (mutation pressure) was 10.29%, 9.92% and 20.02% for MERS-CoV, SARS-CoV and SARS-CoV-2 compared to relative natural selection constraints on GC3.

    Techniques:

    Neutrality plots of CDS sequences of human respiratory coronaviruses. A- Neutrality plot of CDS sequences of MERS-CoV. B- Neutrality plot of CDS sequences of SARS-CoV. C- Neutrality plot of CDS sequences of SARS-CoV-2.

    Journal: Infection, Genetics and Evolution

    Article Title: Deciphering the co-adaptation of codon usage between respiratory coronaviruses and their human host uncovers candidate therapeutics for COVID-19

    doi: 10.1016/j.meegid.2020.104471

    Figure Lengend Snippet: Neutrality plots of CDS sequences of human respiratory coronaviruses. A- Neutrality plot of CDS sequences of MERS-CoV. B- Neutrality plot of CDS sequences of SARS-CoV. C- Neutrality plot of CDS sequences of SARS-CoV-2.

    Article Snippet: The slopes of the regression equations were 1.029, 0.992 and 2.002 for MERS-CoV, SARS-CoV and SARS-CoV-2, respectively, suggesting that the relative neutrality (mutation pressure) was 10.29%, 9.92% and 20.02% for MERS-CoV, SARS-CoV and SARS-CoV-2 compared to relative natural selection constraints on GC3.

    Techniques:

    Dinucleotide over-representation and under-representation in CDS sequences of human respiratory coronaviruses. A- Heatmap of dinucleotide content of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2 based on the base model. B- Heatmap of dinucleotide content of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2 based on the codon model. C- Heatmap of dinucleotide content of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2 based on the syncodon model.

    Journal: Infection, Genetics and Evolution

    Article Title: Deciphering the co-adaptation of codon usage between respiratory coronaviruses and their human host uncovers candidate therapeutics for COVID-19

    doi: 10.1016/j.meegid.2020.104471

    Figure Lengend Snippet: Dinucleotide over-representation and under-representation in CDS sequences of human respiratory coronaviruses. A- Heatmap of dinucleotide content of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2 based on the base model. B- Heatmap of dinucleotide content of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2 based on the codon model. C- Heatmap of dinucleotide content of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2 based on the syncodon model.

    Article Snippet: The slopes of the regression equations were 1.029, 0.992 and 2.002 for MERS-CoV, SARS-CoV and SARS-CoV-2, respectively, suggesting that the relative neutrality (mutation pressure) was 10.29%, 9.92% and 20.02% for MERS-CoV, SARS-CoV and SARS-CoV-2 compared to relative natural selection constraints on GC3.

    Techniques:

    GC composition of CDS sequences of human respiratory coronaviruses. A- Distribution of the overall GC content of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. B- Distribution of the GC1 content of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. C- Distribution of the GC2 content of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. D- GC3 content of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. E - Boxplot of GC, GC1, GC2 and GC3 contents in CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2.

    Journal: Infection, Genetics and Evolution

    Article Title: Deciphering the co-adaptation of codon usage between respiratory coronaviruses and their human host uncovers candidate therapeutics for COVID-19

    doi: 10.1016/j.meegid.2020.104471

    Figure Lengend Snippet: GC composition of CDS sequences of human respiratory coronaviruses. A- Distribution of the overall GC content of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. B- Distribution of the GC1 content of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. C- Distribution of the GC2 content of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. D- GC3 content of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. E - Boxplot of GC, GC1, GC2 and GC3 contents in CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2.

    Article Snippet: The slopes of the regression equations were 1.029, 0.992 and 2.002 for MERS-CoV, SARS-CoV and SARS-CoV-2, respectively, suggesting that the relative neutrality (mutation pressure) was 10.29%, 9.92% and 20.02% for MERS-CoV, SARS-CoV and SARS-CoV-2 compared to relative natural selection constraints on GC3.

    Techniques:

    ENc values and ENc-GC3 plots of CDS sequences of human respiratory coronaviruses. A- Distribution of the ENc of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. B- Boxplot of ENC values of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. C- ENc-GC3 plot of CDS sequences of MERS-CoV. D- ENc-GC3 plot of CDS sequences of SARS-CoV. E- ENc-GC3 plot of CDS sequences of SARS-CoV-2.

    Journal: Infection, Genetics and Evolution

    Article Title: Deciphering the co-adaptation of codon usage between respiratory coronaviruses and their human host uncovers candidate therapeutics for COVID-19

    doi: 10.1016/j.meegid.2020.104471

    Figure Lengend Snippet: ENc values and ENc-GC3 plots of CDS sequences of human respiratory coronaviruses. A- Distribution of the ENc of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. B- Boxplot of ENC values of CDS sequences of MERS-CoV, SARS-CoV and SARS-CoV-2. C- ENc-GC3 plot of CDS sequences of MERS-CoV. D- ENc-GC3 plot of CDS sequences of SARS-CoV. E- ENc-GC3 plot of CDS sequences of SARS-CoV-2.

    Article Snippet: The slopes of the regression equations were 1.029, 0.992 and 2.002 for MERS-CoV, SARS-CoV and SARS-CoV-2, respectively, suggesting that the relative neutrality (mutation pressure) was 10.29%, 9.92% and 20.02% for MERS-CoV, SARS-CoV and SARS-CoV-2 compared to relative natural selection constraints on GC3.

    Techniques:

    PCA analysis of the CDS sequences of human coronaviruses based on RSCU values. A- PCA based on MERS-CoV, SARS-CoV and SARS-CoV-2 CDS sequences and human cell; genes showing high similarity with human cell were visualized on the plot. B- PCA based on MERS-CoV, SARS-CoV and SARS-CoV-2 CDS sequences and human cell CDS sequences.

    Journal: Infection, Genetics and Evolution

    Article Title: Deciphering the co-adaptation of codon usage between respiratory coronaviruses and their human host uncovers candidate therapeutics for COVID-19

    doi: 10.1016/j.meegid.2020.104471

    Figure Lengend Snippet: PCA analysis of the CDS sequences of human coronaviruses based on RSCU values. A- PCA based on MERS-CoV, SARS-CoV and SARS-CoV-2 CDS sequences and human cell; genes showing high similarity with human cell were visualized on the plot. B- PCA based on MERS-CoV, SARS-CoV and SARS-CoV-2 CDS sequences and human cell CDS sequences.

    Article Snippet: The slopes of the regression equations were 1.029, 0.992 and 2.002 for MERS-CoV, SARS-CoV and SARS-CoV-2, respectively, suggesting that the relative neutrality (mutation pressure) was 10.29%, 9.92% and 20.02% for MERS-CoV, SARS-CoV and SARS-CoV-2 compared to relative natural selection constraints on GC3.

    Techniques: