hiseq 2000 sequencing runs Search Results


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  • 86
    Illumina Inc hiseq 2000 sequencing runs
    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina <t>HiSeq</t> 2000 (Pearson r (98) = 0.93, p
    Hiseq 2000 Sequencing Runs, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 86/100, based on 845 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc bp paired end illumina hiseq 2000 sequencing run
    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina <t>HiSeq</t> 2000 (Pearson r (98) = 0.93, p
    Bp Paired End Illumina Hiseq 2000 Sequencing Run, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 88/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc recent illumina hiseq 2000 exome sequencing run
    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina <t>HiSeq</t> 2000 (Pearson r (98) = 0.93, p
    Recent Illumina Hiseq 2000 Exome Sequencing Run, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 85/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    92
    Illumina Inc 101 cycles hiseq 2000 run
    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina <t>HiSeq</t> 2000 (Pearson r (98) = 0.93, p
    101 Cycles Hiseq 2000 Run, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 92/100, based on 10 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc hiseq 2000 illumina run
    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina <t>HiSeq</t> 2000 (Pearson r (98) = 0.93, p
    Hiseq 2000 Illumina Run, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    86
    Illumina Inc hiseq 2000 run
    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina <t>HiSeq</t> 2000 (Pearson r (98) = 0.93, p
    Hiseq 2000 Run, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 86/100, based on 94 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/hiseq 2000 run/product/Illumina Inc
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    Illumina Inc hiseq 2000 ngs platform run
    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina <t>HiSeq</t> 2000 (Pearson r (98) = 0.93, p
    Hiseq 2000 Ngs Platform Run, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 88/100, based on 2 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc hiseq 2000 100 bp paired end run
    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina <t>HiSeq</t> 2000 (Pearson r (98) = 0.93, p
    Hiseq 2000 100 Bp Paired End Run, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 88/100, based on 5 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc end 50 base pair hiseq 2000 runs
    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina <t>HiSeq</t> 2000 (Pearson r (98) = 0.93, p
    End 50 Base Pair Hiseq 2000 Runs, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 2 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    86
    Illumina Inc paired end 50 base pair hiseq 2000 runs
    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina <t>HiSeq</t> 2000 (Pearson r (98) = 0.93, p
    Paired End 50 Base Pair Hiseq 2000 Runs, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 86/100, based on 3 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc hisequation 2000 running casava 1 8 2 rta 1 17 21 3 hiseq control software 2 0 10 0
    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina <t>HiSeq</t> 2000 (Pearson r (98) = 0.93, p
    Hisequation 2000 Running Casava 1 8 2 Rta 1 17 21 3 Hiseq Control Software 2 0 10 0, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 88/100, based on 7 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc hiseq 2000 sequencing platform
    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina <t>HiSeq</t> 2000 (Pearson r (98) = 0.93, p
    Hiseq 2000 Sequencing Platform, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 94/100, based on 2743 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc ga llx hiseq 2000 sequencing platform
    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina <t>HiSeq</t> 2000 (Pearson r (98) = 0.93, p
    Ga Llx Hiseq 2000 Sequencing Platform, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 85/100, based on 9 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc hiseq 2000 sequencer
    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina <t>HiSeq</t> 2000 (Pearson r (98) = 0.93, p
    Hiseq 2000 Sequencer, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 95/100, based on 7564 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc hiseq 2000 next generation sequencer
    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina <t>HiSeq</t> 2000 (Pearson r (98) = 0.93, p
    Hiseq 2000 Next Generation Sequencer, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 88/100, based on 29 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Image Search Results


    Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina HiSeq 2000 (Pearson r (98) = 0.93, p

    Journal: Nucleic Acids Research

    Article Title: Impact of next-generation sequencing error on analysis of barcoded plasmid libraries of known complexity and sequence

    doi: 10.1093/nar/gku607

    Figure Lengend Snippet: Analysis of the relative abundance, GC content and likelihood of secondary structure formation for each of the 100 expected Illumina-compatible barcode sequences. ( A ) Relative abundance of the 100 expected barcode sequences, as detected during the first and second sequencing runs using the Illumina HiSeq 2000 (Pearson r (98) = 0.93, p

    Article Snippet: The samples analyzed included the two post-amplification samples that were used in the Illumina HiSeq 2000 sequencing runs, of which insufficient quantities remained for analysis using semi-quantitative PCR.

    Techniques: Sequencing

    Analysis of the position and substitution-like type of error for all one-mismatch sequence errors for both Illumina HiSeq 2000 sequencing runs. One-mismatch errors were compared to the known barcode sequences from which they were derived. Errors from the first sequencing run represent the sum of one-mismatch errors after Q30 quality filtering for the one-barcode sample and 10- and 100-barcode libraries, although one-mismatch errors from the 100-barcode library comprise 95.3% of all errors. Errors from the second sequencing run represent one-mismatch errors after Q30 quality filtering for the 100-barcode library. ( A ) Distribution of one-mismatch errors across each position of the barcode (positions 2–16 of the sequence reads). This distribution differed significantly from an expected even distribution (χ 2 = 30 064, df = 14, p

    Journal: Nucleic Acids Research

    Article Title: Impact of next-generation sequencing error on analysis of barcoded plasmid libraries of known complexity and sequence

    doi: 10.1093/nar/gku607

    Figure Lengend Snippet: Analysis of the position and substitution-like type of error for all one-mismatch sequence errors for both Illumina HiSeq 2000 sequencing runs. One-mismatch errors were compared to the known barcode sequences from which they were derived. Errors from the first sequencing run represent the sum of one-mismatch errors after Q30 quality filtering for the one-barcode sample and 10- and 100-barcode libraries, although one-mismatch errors from the 100-barcode library comprise 95.3% of all errors. Errors from the second sequencing run represent one-mismatch errors after Q30 quality filtering for the 100-barcode library. ( A ) Distribution of one-mismatch errors across each position of the barcode (positions 2–16 of the sequence reads). This distribution differed significantly from an expected even distribution (χ 2 = 30 064, df = 14, p

    Article Snippet: The samples analyzed included the two post-amplification samples that were used in the Illumina HiSeq 2000 sequencing runs, of which insufficient quantities remained for analysis using semi-quantitative PCR.

    Techniques: Sequencing, Derivative Assay

    SEQC study design. This figure was modified from b presented in the related research manuscript 13 . Similar to the MAQC-I benchmarks, well characterized RNA samples A and B were augmented by samples C and D comprised of A and B in known mixing ratios 3:1 and 1:3, respectively. These allow tests for titration consistency and the correct recovery of the known mixing ratios. Synthetic RNAs from the External RNA Control Consortium (ERCC) were both pre-added to samples A and B before mixing and also sequenced separately to assess dynamic range (samples E and F). Samples were distributed to independent sites for RNA-Seq library construction and profiling by Illumina’s HiSeq 2000 (3+4x) and Life Technologies’ SOLiD 5500 (3+1x). In addition to the replicate libraries A1…D4 at each site, for each platform, one vendor-prepared library A5…D5 was being sequenced at all three official sites, giving a total of 24 libraries. At each site, each library has a unique barcode sequence and all libraries were pooled before sequencing, so each lane was sequencing the same material, allowing a study of lane specific effects. Samples A and B were also sequenced by Roche 454 GS FLX at different sites with two runs each but no library replicates.

    Journal: Scientific Data

    Article Title: Cross-platform ultradeep transcriptomic profiling of human reference RNA samples by RNA-Seq

    doi: 10.1038/sdata.2014.20

    Figure Lengend Snippet: SEQC study design. This figure was modified from b presented in the related research manuscript 13 . Similar to the MAQC-I benchmarks, well characterized RNA samples A and B were augmented by samples C and D comprised of A and B in known mixing ratios 3:1 and 1:3, respectively. These allow tests for titration consistency and the correct recovery of the known mixing ratios. Synthetic RNAs from the External RNA Control Consortium (ERCC) were both pre-added to samples A and B before mixing and also sequenced separately to assess dynamic range (samples E and F). Samples were distributed to independent sites for RNA-Seq library construction and profiling by Illumina’s HiSeq 2000 (3+4x) and Life Technologies’ SOLiD 5500 (3+1x). In addition to the replicate libraries A1…D4 at each site, for each platform, one vendor-prepared library A5…D5 was being sequenced at all three official sites, giving a total of 24 libraries. At each site, each library has a unique barcode sequence and all libraries were pooled before sequencing, so each lane was sequencing the same material, allowing a study of lane specific effects. Samples A and B were also sequenced by Roche 454 GS FLX at different sites with two runs each but no library replicates.

    Article Snippet: Equal amounts of pooled libraries were then loaded to each lane of 2 flow cells and run on HiSeq 2000 Sequencing Systems (Illumina) for paired-end 200 cycles.

    Techniques: Modification, Titration, RNA Sequencing Assay, Sequencing