Article Title: SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes
Figure Lengend Snippet: Representation of SkateBase data within the The National Center for Biotechnology Information (NCBI) databases. A . The little skate genome project is represented as a BioProject entry that connects all samples and data thematically. A BioSample record describes the DNA sample that was used for genome sequencing that was generated from a single stage 32 skate embryo. The SRA catalogs the unassembled Illumina genome sequence data. The Whole Genome Shotgun (WGS) database contains the contiguous sequences from shotgun sequencing projects. The assembled and annotated mitochondrial genome was deposited in GenBank and subsequently included in the NCBI Reference Sequence Database (RefSeq). B . The project to characterize the embryonic transcriptomes of L. erinacea , C. milii and S. canicula is represented in a BioProject entry. Three BioSample entries, one for each species, lead to three SRA datasets. The transcriptome data is represented also in the Gene Expression Omnibus (GEO), a database of high-throughput functional genomic data derived from microarrays and next-generation sequencing technologies.
Article Snippet: The International Nucleotide Sequence Database Collaboration (INSDC) is composed of three large public nucleotide repositories, DNA Data Bank of Japan (DDBJ), European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI), and GenBank at the National Center for Biotechnology Information (NCBI).
Techniques: Sequencing, Generated, Shotgun Sequencing, Expressing, High Throughput Screening Assay, Functional Assay, Derivative Assay, Next-Generation Sequencing