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  • 92
    ATCC ddbj ena genbank
    Ddbj Ena Genbank, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 9 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc ddbj embl genbank
    Ddbj Embl Genbank, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 88/100, based on 10 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Biotechnology Information ddbj embl genbank
    Nucleotide sequence and deduced amino acid sequence of K31 gene . The accession no. was AY885255 at <t>Genbank.</t> K31 cDNA was 1106 bp. Its ORF has 342 nucleotides, which codes 113 aa. The nucleotides (lower row) and deduced amino acids (upper row) are numbered at the right side of the sequences, respectively. Poly (A) signal (in the 3' UTR) is underlined. The start codon (ATG) is in bold and the stop codon (TAA) is indicated by an asterisk. An unstable motif (ATTTA) is doubly underlined.
    Ddbj Embl Genbank, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 88/100, based on 13 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    88
    Unigene ddbj embl genbank
    Nucleotide sequence and deduced amino acid sequence of K31 gene . The accession no. was AY885255 at <t>Genbank.</t> K31 cDNA was 1106 bp. Its ORF has 342 nucleotides, which codes 113 aa. The nucleotides (lower row) and deduced amino acids (upper row) are numbered at the right side of the sequences, respectively. Poly (A) signal (in the 3' UTR) is underlined. The start codon (ATG) is in bold and the stop codon (TAA) is indicated by an asterisk. An unstable motif (ATTTA) is doubly underlined.
    Ddbj Embl Genbank, supplied by Unigene, used in various techniques. Bioz Stars score: 88/100, based on 6 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    93
    Illumina Inc genbank database
    Whole-genome phylogeny of CHIKV and ZIKV. (A, upper portion) Phylogeny of all 314 CHIKV genomes available in NCBI <t>GenBank</t> as of March 2016 and 2 new complete or partial genomes from the current study. The three major lineages of CHIKV are shown in different
    Genbank Database, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 93/100, based on 42 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    85
    Merck & Co genbank embl ddbj accession
    Whole-genome phylogeny of CHIKV and ZIKV. (A, upper portion) Phylogeny of all 314 CHIKV genomes available in NCBI <t>GenBank</t> as of March 2016 and 2 new complete or partial genomes from the current study. The three major lineages of CHIKV are shown in different
    Genbank Embl Ddbj Accession, supplied by Merck & Co, used in various techniques. Bioz Stars score: 85/100, based on 7 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    91
    Bioedit Company genbank embl ddbj databases
    Whole-genome phylogeny of CHIKV and ZIKV. (A, upper portion) Phylogeny of all 314 CHIKV genomes available in NCBI <t>GenBank</t> as of March 2016 and 2 new complete or partial genomes from the current study. The three major lineages of CHIKV are shown in different
    Genbank Embl Ddbj Databases, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 91/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    TaKaRa genbank embl ddbj accession
    Whole-genome phylogeny of CHIKV and ZIKV. (A, upper portion) Phylogeny of all 314 CHIKV genomes available in NCBI <t>GenBank</t> as of March 2016 and 2 new complete or partial genomes from the current study. The three major lineages of CHIKV are shown in different
    Genbank Embl Ddbj Accession, supplied by TaKaRa, used in various techniques. Bioz Stars score: 85/100, based on 8 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    90
    Mimotopes prototype qpm genbank ddbj accession no
    Whole-genome phylogeny of CHIKV and ZIKV. (A, upper portion) Phylogeny of all 314 CHIKV genomes available in NCBI <t>GenBank</t> as of March 2016 and 2 new complete or partial genomes from the current study. The three major lineages of CHIKV are shown in different
    Prototype Qpm Genbank Ddbj Accession No, supplied by Mimotopes, used in various techniques. Bioz Stars score: 90/100, based on 2 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    93
    Unigene genbank
    DataSet cluster analysis. Section of DataSet GDS279 uncentered correlation UPGMA hierarchical cluster analysis. Each column represents an individual Sample, or hybridization; each row represents a gene, identified by a <t>GenBank</t> accession number. The light color indicates high expression and the darker color low expression. The dashed box can be moved and resized to select regions of interest, the data for which may be downloaded, or exported to Entrez GEO Profiles.
    Genbank, supplied by Unigene, used in various techniques. Bioz Stars score: 93/100, based on 565 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Agilent technologies genbank
    DataSet cluster analysis. Section of DataSet GDS279 uncentered correlation UPGMA hierarchical cluster analysis. Each column represents an individual Sample, or hybridization; each row represents a gene, identified by a <t>GenBank</t> accession number. The light color indicates high expression and the darker color low expression. The dashed box can be moved and resized to select regions of interest, the data for which may be downloaded, or exported to Entrez GEO Profiles.
    Genbank, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 92/100, based on 35 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Data MATRIX genbank
    DataSet cluster analysis. Section of DataSet GDS279 uncentered correlation UPGMA hierarchical cluster analysis. Each column represents an individual Sample, or hybridization; each row represents a gene, identified by a <t>GenBank</t> accession number. The light color indicates high expression and the darker color low expression. The dashed box can be moved and resized to select regions of interest, the data for which may be downloaded, or exported to Entrez GEO Profiles.
    Genbank, supplied by Data MATRIX, used in various techniques. Bioz Stars score: 92/100, based on 20 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    92
    MacVector genbank
    A phylogenetic tree based on the nucleotide sequences of a 304-bp region within the ORF2 gene of HEV. The tree was constructed with the aid of the PAUP program. A heuristic search with 1,000 replicates and with a midpoint rooting option was used to construct the tree. A scale bar representing the numbers of character state changes is shown. The swine HEV isolates from this study are indicated in boldface. The <t>GenBank</t> database accession numbers of the sequences of HEV isolates used in the phylogenetic analyses are listed in the text.
    Genbank, supplied by MacVector, used in various techniques. Bioz Stars score: 92/100, based on 242 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    94
    Thermo Fisher genbank
    Sequence distance matrix built on in silico translated sequences of randomly picked clones from E. coli sdAb library (clones were designated as VHH-H3, 5, 7 etc.). KF013132—accession number of reference sequence from the <t>Genbank.</t> Number of amino acid residues not identical are presented in each square. Number of non-identical residues in matrix were > 28 ( arrow ) indicating high divergence of the library
    Genbank, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 94/100, based on 2239 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    91
    Epigenomics ddbj
    Sequence distance matrix built on in silico translated sequences of randomly picked clones from E. coli sdAb library (clones were designated as VHH-H3, 5, 7 etc.). KF013132—accession number of reference sequence from the <t>Genbank.</t> Number of amino acid residues not identical are presented in each square. Number of non-identical residues in matrix were > 28 ( arrow ) indicating high divergence of the library
    Ddbj, supplied by Epigenomics, used in various techniques. Bioz Stars score: 91/100, based on 14 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Gallus BioPharmaceuticals genbank
    Sequence distance matrix built on in silico translated sequences of randomly picked clones from E. coli sdAb library (clones were designated as VHH-H3, 5, 7 etc.). KF013132—accession number of reference sequence from the <t>Genbank.</t> Number of amino acid residues not identical are presented in each square. Number of non-identical residues in matrix were > 28 ( arrow ) indicating high divergence of the library
    Genbank, supplied by Gallus BioPharmaceuticals, used in various techniques. Bioz Stars score: 92/100, based on 35 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    DNAnexus ddbj
    Sequence distance matrix built on in silico translated sequences of randomly picked clones from E. coli sdAb library (clones were designated as VHH-H3, 5, 7 etc.). KF013132—accession number of reference sequence from the <t>Genbank.</t> Number of amino acid residues not identical are presented in each square. Number of non-identical residues in matrix were > 28 ( arrow ) indicating high divergence of the library
    Ddbj, supplied by DNAnexus, used in various techniques. Bioz Stars score: 93/100, based on 3 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Incyte genbank
    Sequence distance matrix built on in silico translated sequences of randomly picked clones from E. coli sdAb library (clones were designated as VHH-H3, 5, 7 etc.). KF013132—accession number of reference sequence from the <t>Genbank.</t> Number of amino acid residues not identical are presented in each square. Number of non-identical residues in matrix were > 28 ( arrow ) indicating high divergence of the library
    Genbank, supplied by Incyte, used in various techniques. Bioz Stars score: 92/100, based on 13 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    GenePharma Company genbank
    Sequence distance matrix built on in silico translated sequences of randomly picked clones from E. coli sdAb library (clones were designated as VHH-H3, 5, 7 etc.). KF013132—accession number of reference sequence from the <t>Genbank.</t> Number of amino acid residues not identical are presented in each square. Number of non-identical residues in matrix were > 28 ( arrow ) indicating high divergence of the library
    Genbank, supplied by GenePharma Company, used in various techniques. Bioz Stars score: 91/100, based on 51 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    89
    Ridom GmbH ddbj
    Phylogenetic tree of mycobacteria, including one representative strain for each species. Multiple sequence alignments were determined using the CLUSTAL method algorithm in the Megalign component of the Lasergene program (version 4.01). (A) Phylogenetic tree inferring relationships among rapid growers of the Mycobacterium genus. (B) Phylogenetic tree inferring relationships among slow growers of the Mycobacterium genus. The tree was rooted using Nocardia asteroides as the outgroup sequence. Sequences were determined in our laboratory unless indicated by a <t>GenBank</t> accession number.
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    Image Search Results


    Nucleotide sequence and deduced amino acid sequence of K31 gene . The accession no. was AY885255 at Genbank. K31 cDNA was 1106 bp. Its ORF has 342 nucleotides, which codes 113 aa. The nucleotides (lower row) and deduced amino acids (upper row) are numbered at the right side of the sequences, respectively. Poly (A) signal (in the 3' UTR) is underlined. The start codon (ATG) is in bold and the stop codon (TAA) is indicated by an asterisk. An unstable motif (ATTTA) is doubly underlined.

    Journal: BMC Developmental Biology

    Article Title: Identification and characterization of a novel gene differentially expressed in zebrafish cross-subfamily cloned embryos

    doi: 10.1186/1471-213X-8-29

    Figure Lengend Snippet: Nucleotide sequence and deduced amino acid sequence of K31 gene . The accession no. was AY885255 at Genbank. K31 cDNA was 1106 bp. Its ORF has 342 nucleotides, which codes 113 aa. The nucleotides (lower row) and deduced amino acids (upper row) are numbered at the right side of the sequences, respectively. Poly (A) signal (in the 3' UTR) is underlined. The start codon (ATG) is in bold and the stop codon (TAA) is indicated by an asterisk. An unstable motif (ATTTA) is doubly underlined.

    Article Snippet: Data mining and bio-information analyses Homology search of K31 gene was performed on the sequences listed in EMBL/GenBank/DDBJ databases using PHI- and PSI-BLAST, EST-BLAST and Protein-protein BLAST (blastp) at the web site of the National Center of Biotechnology Information (NCBI) [ ].

    Techniques: Sequencing

    Whole-genome phylogeny of CHIKV and ZIKV. (A, upper portion) Phylogeny of all 314 CHIKV genomes available in NCBI GenBank as of March 2016 and 2 new complete or partial genomes from the current study. The three major lineages of CHIKV are shown in different

    Journal: Journal of Clinical Microbiology

    Article Title: Coinfections of Zika and Chikungunya Viruses in Bahia, Brazil, Identified by Metagenomic Next-Generation Sequencing

    doi: 10.1128/JCM.00877-16

    Figure Lengend Snippet: Whole-genome phylogeny of CHIKV and ZIKV. (A, upper portion) Phylogeny of all 314 CHIKV genomes available in NCBI GenBank as of March 2016 and 2 new complete or partial genomes from the current study. The three major lineages of CHIKV are shown in different

    Article Snippet: To aid genome recovery of sample Bahia08, we enriched the mNGS library for ZIKV sequences using a set of 299 XGen biotinylated lockdown capture probes (IDT Technologies) targeting all ZIKV genomes in the National Center for Biotechnology Information (NCBI) GenBank database, as previously described , followed by Illumina MiSeq sequencing of the enriched library.

    Techniques:

    Phylogenetic diversity within the genus Ostreococcus . ( A ) Phylogenetic tree of 26 Ostreococcus sequences from the V4 region of the 18S rRNA gene (FastTree). The tree was rooted with B . prasinos . Only ML bootstrap values higher than 70% are represented. Bayesian posterior probabilities are in bold. ASVs are in bold: black for the LGC dataset and gray for the LW dataset. Only ASVs represented by more than 200 reads were taken into account. Environmental GenBank sequences are in blue. ( B ) Alignment of 26 Ostreococcus V4 regions: the alignment is 341 bp long, but only the main signatures are shown (between positions 20 and 140 of the original alignment).

    Journal: Scientific Reports

    Article Title: Novel diversity within marine Mamiellophyceae (Chlorophyta) unveiled by metabarcoding

    doi: 10.1038/s41598-019-41680-6

    Figure Lengend Snippet: Phylogenetic diversity within the genus Ostreococcus . ( A ) Phylogenetic tree of 26 Ostreococcus sequences from the V4 region of the 18S rRNA gene (FastTree). The tree was rooted with B . prasinos . Only ML bootstrap values higher than 70% are represented. Bayesian posterior probabilities are in bold. ASVs are in bold: black for the LGC dataset and gray for the LW dataset. Only ASVs represented by more than 200 reads were taken into account. Environmental GenBank sequences are in blue. ( B ) Alignment of 26 Ostreococcus V4 regions: the alignment is 341 bp long, but only the main signatures are shown (between positions 20 and 140 of the original alignment).

    Article Snippet: The clade E sequence is very similar to that of clade B, with two clear bp differences (Fig. ), and is 100% similar to a single sequence available from GenBank (accession number MH008654) also obtained by Illumina sequencing from South China Sea waters .

    Techniques:

    DataSet cluster analysis. Section of DataSet GDS279 uncentered correlation UPGMA hierarchical cluster analysis. Each column represents an individual Sample, or hybridization; each row represents a gene, identified by a GenBank accession number. The light color indicates high expression and the darker color low expression. The dashed box can be moved and resized to select regions of interest, the data for which may be downloaded, or exported to Entrez GEO Profiles.

    Journal: Methods in molecular biology (Clifton, N.J.)

    Article Title: Mining Microarray Data at NCBI's Gene Expression Omnibus (GEO) *

    doi: 10.1385/1-59745-097-9:175

    Figure Lengend Snippet: DataSet cluster analysis. Section of DataSet GDS279 uncentered correlation UPGMA hierarchical cluster analysis. Each column represents an individual Sample, or hybridization; each row represents a gene, identified by a GenBank accession number. The light color indicates high expression and the darker color low expression. The dashed box can be moved and resized to select regions of interest, the data for which may be downloaded, or exported to Entrez GEO Profiles.

    Article Snippet: Links menu allows users to easily traverse from the GEO databases to associated records in other Entrez data domains including GenBank, PubMed, Gene, UniGene, OMIM, HomoloGene, Taxonomy, SAGEMap, and MapViewer.

    Techniques: Hybridization, Expressing

    A phylogenetic tree based on the nucleotide sequences of a 304-bp region within the ORF2 gene of HEV. The tree was constructed with the aid of the PAUP program. A heuristic search with 1,000 replicates and with a midpoint rooting option was used to construct the tree. A scale bar representing the numbers of character state changes is shown. The swine HEV isolates from this study are indicated in boldface. The GenBank database accession numbers of the sequences of HEV isolates used in the phylogenetic analyses are listed in the text.

    Journal: Journal of Clinical Microbiology

    Article Title: Detection by Reverse Transcription-PCR and Genetic Characterization of Field Isolates of Swine Hepatitis E Virus from Pigs in Different Geographic Regions of the United States

    doi: 10.1128/JCM.40.4.1326-1332.2002

    Figure Lengend Snippet: A phylogenetic tree based on the nucleotide sequences of a 304-bp region within the ORF2 gene of HEV. The tree was constructed with the aid of the PAUP program. A heuristic search with 1,000 replicates and with a midpoint rooting option was used to construct the tree. A scale bar representing the numbers of character state changes is shown. The swine HEV isolates from this study are indicated in boldface. The GenBank database accession numbers of the sequences of HEV isolates used in the phylogenetic analyses are listed in the text.

    Article Snippet: The resulting 304-bp sequences in the ORF2 genes of the 27 U.S. isolates of swine HEV were analyzed and compared with the corresponding regions of other known human, swine, and avian HEV strains available in GenBank by the MacVector computer program (Oxford Molecular Inc.) (Table ).

    Techniques: Construct

    Sequence distance matrix built on in silico translated sequences of randomly picked clones from E. coli sdAb library (clones were designated as VHH-H3, 5, 7 etc.). KF013132—accession number of reference sequence from the Genbank. Number of amino acid residues not identical are presented in each square. Number of non-identical residues in matrix were > 28 ( arrow ) indicating high divergence of the library

    Journal: Microbial Cell Factories

    Article Title: Joining the in vitro immunization of alpaca lymphocytes and phage display: rapid and cost effective pipeline for sdAb synthesis

    doi: 10.1186/s12934-017-0630-z

    Figure Lengend Snippet: Sequence distance matrix built on in silico translated sequences of randomly picked clones from E. coli sdAb library (clones were designated as VHH-H3, 5, 7 etc.). KF013132—accession number of reference sequence from the Genbank. Number of amino acid residues not identical are presented in each square. Number of non-identical residues in matrix were > 28 ( arrow ) indicating high divergence of the library

    Article Snippet: In short, IL-2 and IL-4 coding sequences were retrieved from the GenBank (KM205215.1 and KM205216.1, http://www.ncbi.nlm.nih.gov/ ) and synthesized commercially (Invitrogen, Slovakia) with flanking sequences containing restriction sites for BamH I at 5′ and amber stop codon followed by Sal I at 3′ end.

    Techniques: Sequencing, In Silico, Clone Assay

    Phylogenetic tree of mycobacteria, including one representative strain for each species. Multiple sequence alignments were determined using the CLUSTAL method algorithm in the Megalign component of the Lasergene program (version 4.01). (A) Phylogenetic tree inferring relationships among rapid growers of the Mycobacterium genus. (B) Phylogenetic tree inferring relationships among slow growers of the Mycobacterium genus. The tree was rooted using Nocardia asteroides as the outgroup sequence. Sequences were determined in our laboratory unless indicated by a GenBank accession number.

    Journal: Journal of Clinical Microbiology

    Article Title: Necessity of Quality-Controlled 16S rRNA Gene Sequence Databases: Identifying Nontuberculous Mycobacterium Species

    doi: 10.1128/JCM.39.10.3637-3648.2001

    Figure Lengend Snippet: Phylogenetic tree of mycobacteria, including one representative strain for each species. Multiple sequence alignments were determined using the CLUSTAL method algorithm in the Megalign component of the Lasergene program (version 4.01). (A) Phylogenetic tree inferring relationships among rapid growers of the Mycobacterium genus. (B) Phylogenetic tree inferring relationships among slow growers of the Mycobacterium genus. The tree was rooted using Nocardia asteroides as the outgroup sequence. Sequences were determined in our laboratory unless indicated by a GenBank accession number.

    Article Snippet: The type strains among them were compared to those in public sequence repositories like GenBank, EMBL, and DDBJ, and also to the RIDOM database.

    Techniques: Sequencing