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All (2)
Illumina
Thermo Fisher
 

About 5 products / 5 snippets / 3 images

91 / 100
Bioz Stars
Omni1Quad arrays
Illumina  
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Techniques
 
Article Snippets
"The NimbleGen 4.2 M CNV, Agilent 2×400 K CNV and Illumina Omni1Quad arrays detect the majority of the platform-specific 42 M GS CNVs (>20% each)."  (see more)
Missing: custom designed 400k 
95 / 100
Bioz Stars
250K SNP array
Thermo Fisher Scientific / Affymetrix  
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Techniques
 
Article Snippets
"Patient 2 was examined with Agilent Oligoarray 400K, patient 3 with Affymetrix 250K SNP array, patients 4 and 8 with Agilent 44K, patient 5 with Affymetrix 250K and .."  (see more)
Missing: custom designed 
Depicted are the log 2 ratios of NA12878 to the control genome and locations along the chromosome for each probe (blue dot) in this region. Gene, 1000 Genomes Project Gold Standard CNVs (1000GP CNVs) and Segmental Duplication (SD) tracks are shown. The CNV highlighted in the red box was called by both replicates for all twelve platforms using the manufacturer-recommended software and parameters. Red arrows indicate examples of additional array-specific CNV calls. A. NimbleGen 4.2 M Whole Genome, B. NimbleGen 4.2 M CNV, C. NimbleGen 2.1 M Whole Genome, D. NimbleGen 2.1 M CNV, E. NimbleGen 3×720 K Whole Genome, F. NimbleGen 3×720 K CNV, G. Agilent 1×1 M CGH, H. Agilent 1×1 M High Resolution, I. Agilent 2×400 K CNV, J. Agilent 2×400 K CGH+SNP, K. Illumina Human <t>Omni1Quad,</t> L. Affymetrix SNP 6.0.
Features and experimental details of <t> CNV </t> detection platforms used in this study
SOFT
GENOM-WIDE
MA
Detection of a 122 kb gold standard deletion on chromosome 19p by 17 arrays. Horizontal axis shows position along chromosome 19. Vertical axes show log R ratio of fluorescence of NA12878 DNA over fluorescence of reference DNA. Grey dots indicate probes that have not been called as part of a <t>CNV.</t> Red dots indicate probes that have been called as part of a CNV. Horizontal lines indicate Nexus cutoffs for low and high copy deletions ( red ) and duplications ( blue ). Gray dashed box indicates CNV region. Genes and segmental duplications (SegDups) are also shown. 1. Affymetrix <t>SNP6.0,</t> 2. Affymetrix CytoScanHD, 3. Agilent 1×1M-CGH, 4. Agilent 1×1M-HR, 5. Agilent 2×400K-CGH, 6. Agilent 2×400K-CNV, 7. Agilent 4×180K-CGH, 8. Illumina <t>HumanOmni5Exome,</t> 9. Illumina HumanOmni5, 10. Illumina HumanOmni2.5Exome, 11. Illumina HumanOmni2.5, 12. Illumina HumanOmni1Quad, 13. Illumina HumanOmniExpressExome, 14. Illumina HumanOmniExpress, 15. Illumina CoreExome, 16. Illumina CytoSNP-850, 17. Illumina Psych Array
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94 / 100
Bioz Stars
HumanMethylation27 BeadChip microarrays
Illumina  
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Techniques
 
Article Snippets
"Materials and methods The Agilent SurePrint G3 Human CGH+SNP 2×400K and Illumina HumanMethylation27 BeadChip microarrays were used for DNA testing from advanced atherosclerotic plaques of carotid and .."  (see more)
Missing: custom designed 
85 / 100
Bioz Stars
CNV focused designs
Thermo Fisher Scientific / Affymetrix  
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Techniques
 
Article Snippets
"In general, the arrays with more probes and the CNV focused designs (Affymetrix SNP6.0, Agilent 1×1M-HR, 1×1M-CGH, and 2×400K-CNV, and Illumina HumanOmni5Exome and Omni5) showed no .."  (see more)
SOFT
GENOM-WIDE
MA
Missing: custom designed 
90 / 100
Bioz Stars
CNVs
Illumina  
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Techniques
 
Article Snippets
"Abstract: Alan Ma | John R. Grigg | Maree Flaherty | James Smith | Andre E. Minoche | Mark J. Cowley | Benjamin M. Nash | Gladys Ho | Thet Gayagay | Tiffany Lai | Elizabeth Farnsworth | Emma L. Hackett | Katrina Slater | Karen Wong | Katherin ..."  (see more)
Missing: custom designed