Journal: Standards in Genomic Sciences
Article Title: Complete genome sequence of Bacteroides helcogenes type strain (P 36-108 T )
Figure Lengend Snippet: Phylogenetic tree highlighting the position of B. helcogenes relative to those type strains within the genus that appeared within a monophyletic Bacteroides main clade in preliminary analyses. Note that several of the Bacteroides type strain 16S rRNA sequences (from B. cellulosolvens , B. galacturonicus , B. pectinophilus , B. vulgatus ) did not cluster together with this clade (data not shown, but see ) and were omitted from the main phylogenetic inference analysis. The same holds for the sequence from Anaerorhabdus furcosa (GU585668; also Bacteroidaceae ). Other Bacteroides species lacked a sufficiently long 16S rRNA sequence and also had to be omitted ( B. coagulans , B. xylanolyticus ). The tree was inferred from 1,414 aligned characters [ , ] of the 16S rRNA gene sequence under the maximum likelihood criterion and rooted with the type strain of the family ' Prevotellaceae '. The branches are scaled in terms of the expected number of substitutions per site. Numbers above branches are support values from 1,000 bootstrap replicates if larger than 60%. Lineages with type strain genome sequencing projects registered in GOLD are shown in blue, published genomes and Prevotella melaninogenica released Genbank accession CP002122 in bold.
Article Snippet: Strain P 36-108 T (= DSM 20613 = ATCC 35417 = JCM 6297) is the type strain of Bacteroides helcogenes , one of currently 39 species in the genus Bacteroides [ , ].