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InforMax Inc vector nti
The genetic organization of Saccharomyces <t>mtDNA.</t> For simpler comparison, the circular genomes, exported from Vector <t>NTI,</t> were aligned at the beginning of the large rRNA subunit ( rnl ). Protein-coding genes, ribosomal RNA, rnpB are marked as arrows and bar, tRNA genes as black lines, introns with white rectangles, intronic and free-standing ORFs by gray arrows and replication origins with black circles. Gene nomenclature follows the rules described in GOBASE ( atp for ATP synthetase subunits, cox for cytochrome oxidase subunits, cob for cytochrome b, rns for small rRNA ribosomal subunit, rnl for large rRNA ribosomal subunit, T2, C, H, etc. for particular tRNA coding genes, rps3 for ribosomal protein and rnpB for the RNA subunit of RNase P). Sizes are given on the bottom line in kbp.
Vector Nti, supplied by InforMax Inc, used in various techniques. Bioz Stars score: 92/100, based on 11 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 92 stars, based on 11 article reviews
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vector nti - by Bioz Stars, 2020-08
92/100 stars

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Article Title: The evolutionary history of Saccharomyces species inferred from completed mitochondrial genomes and revision in the ‘yeast mitochondrial genetic code’

Journal: DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes

doi: 10.1093/dnares/dsx026

The genetic organization of Saccharomyces mtDNA. For simpler comparison, the circular genomes, exported from Vector NTI, were aligned at the beginning of the large rRNA subunit ( rnl ). Protein-coding genes, ribosomal RNA, rnpB are marked as arrows and bar, tRNA genes as black lines, introns with white rectangles, intronic and free-standing ORFs by gray arrows and replication origins with black circles. Gene nomenclature follows the rules described in GOBASE ( atp for ATP synthetase subunits, cox for cytochrome oxidase subunits, cob for cytochrome b, rns for small rRNA ribosomal subunit, rnl for large rRNA ribosomal subunit, T2, C, H, etc. for particular tRNA coding genes, rps3 for ribosomal protein and rnpB for the RNA subunit of RNase P). Sizes are given on the bottom line in kbp.
Figure Legend Snippet: The genetic organization of Saccharomyces mtDNA. For simpler comparison, the circular genomes, exported from Vector NTI, were aligned at the beginning of the large rRNA subunit ( rnl ). Protein-coding genes, ribosomal RNA, rnpB are marked as arrows and bar, tRNA genes as black lines, introns with white rectangles, intronic and free-standing ORFs by gray arrows and replication origins with black circles. Gene nomenclature follows the rules described in GOBASE ( atp for ATP synthetase subunits, cox for cytochrome oxidase subunits, cob for cytochrome b, rns for small rRNA ribosomal subunit, rnl for large rRNA ribosomal subunit, T2, C, H, etc. for particular tRNA coding genes, rps3 for ribosomal protein and rnpB for the RNA subunit of RNase P). Sizes are given on the bottom line in kbp.

Techniques Used: Plasmid Preparation

Related Articles

Sequencing:

Article Title: The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms
Article Snippet: .. Multiple sequence alignments and phylogenetic tree construction The alignment of the amino acid sequences of all Runt domains used in this study was performed using the modified Clustal W [ ] program in the AlignX® module of Vector NTI (InforMax, Inc.). ..

Article Title: Detection of Mycobacteria by Culture and DNA-Based Methods in Animal-Derived Food Products Purchased at Spanish Supermarkets
Article Snippet: .. Sequences were inspected, edited and aligned with Sequencing Analysis 5.2 (Applied Biosystems) and Vector NTI (Informax Inc., Bethesda, MD, USA) software assistance and compared with other publicly available sequences using online BLAST (NCBI, NLM, Bethesda, MD, USA) analysis. ..

Article Title: Role of a nosX Homolog in Streptococcus gordonii in Aerobic Growth and Biofilm Formation
Article Snippet: .. Amino acid sequence alignments and phylogenetic analyses were performed and analyzed with the AlignX program in Vector NTI (Informax, Inc., Bethesda, Md.). .. The in vitro biofilm formation assays of S. gordonii Challis 2 and the biofilm-defective Challis::Tn 917-lac mutant were performed with biofilm medium (BM) as previously described ( , ).

Article Title: Inheritance of L1014F and M918T sodium channel mutations associated with pyrethroid resistance in Myzus persicae
Article Snippet: .. Sequence data were aligned and analysed using Vector NTI (Informax, Inc.). ..

Modification:

Article Title: The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms
Article Snippet: .. Multiple sequence alignments and phylogenetic tree construction The alignment of the amino acid sequences of all Runt domains used in this study was performed using the modified Clustal W [ ] program in the AlignX® module of Vector NTI (InforMax, Inc.). ..

Plasmid Preparation:

Article Title: Complete Sequence and Evolutionary Genomic Analysis of the Pseudomonas aeruginosa Transposable Bacteriophage D3112
Article Snippet: .. Restriction enzyme analysis was determined by Vector NTI (version 6.0; InforMax, Inc., Bethesda, Md.). ..

Article Title: Expression of KT/KUP Genes in Arabidopsis and the Role of Root Hairs in K+ Uptake
Article Snippet: .. These sequences were aligned, and pair-wise comparisons were performed with ClustalW ( ) using Vector NTI (version 7.0, InforMax, Inc., Frederick, MD). ..

Article Title: The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms
Article Snippet: .. Multiple sequence alignments and phylogenetic tree construction The alignment of the amino acid sequences of all Runt domains used in this study was performed using the modified Clustal W [ ] program in the AlignX® module of Vector NTI (InforMax, Inc.). ..

Article Title: Detection of Mycobacteria by Culture and DNA-Based Methods in Animal-Derived Food Products Purchased at Spanish Supermarkets
Article Snippet: .. Sequences were inspected, edited and aligned with Sequencing Analysis 5.2 (Applied Biosystems) and Vector NTI (Informax Inc., Bethesda, MD, USA) software assistance and compared with other publicly available sequences using online BLAST (NCBI, NLM, Bethesda, MD, USA) analysis. ..

Article Title: Role of a nosX Homolog in Streptococcus gordonii in Aerobic Growth and Biofilm Formation
Article Snippet: .. Amino acid sequence alignments and phylogenetic analyses were performed and analyzed with the AlignX program in Vector NTI (Informax, Inc., Bethesda, Md.). .. The in vitro biofilm formation assays of S. gordonii Challis 2 and the biofilm-defective Challis::Tn 917-lac mutant were performed with biofilm medium (BM) as previously described ( , ).

Article Title: The evolutionary history of Saccharomyces species inferred from completed mitochondrial genomes and revision in the ‘yeast mitochondrial genetic code’
Article Snippet: .. Individual contigs with mtDNA segments were assembled into a single molecule using the Vector NTI v.9.0 (v.10) software package from InforMax, Inc. .. Overall, 1–10 contigs were obtained covering 98–101% of the entire sequence, depending on the purification method ( ).

Article Title: Inheritance of L1014F and M918T sodium channel mutations associated with pyrethroid resistance in Myzus persicae
Article Snippet: .. Sequence data were aligned and analysed using Vector NTI (Informax, Inc.). ..

Article Title: Yersiniabactin Production by Pseudomonas syringae and Escherichia coli, and Description of a Second Yersiniabactin Locus Evolutionary Group
Article Snippet: .. The maps were constructed using Vector NTI (InforMax, Inc.) or PowerPoint. .. In order to determine whether the modifications in irp1 , irp2 , and irp5 found in E. coli CFT073 give functional proteins in E. coli , a search for the modifications in irp1 and irp2 was undertaken with YBT-producing ECOR strains.

Construct:

Article Title: Yersiniabactin Production by Pseudomonas syringae and Escherichia coli, and Description of a Second Yersiniabactin Locus Evolutionary Group
Article Snippet: .. The maps were constructed using Vector NTI (InforMax, Inc.) or PowerPoint. .. In order to determine whether the modifications in irp1 , irp2 , and irp5 found in E. coli CFT073 give functional proteins in E. coli , a search for the modifications in irp1 and irp2 was undertaken with YBT-producing ECOR strains.

Software:

Article Title: Detection of Mycobacteria by Culture and DNA-Based Methods in Animal-Derived Food Products Purchased at Spanish Supermarkets
Article Snippet: .. Sequences were inspected, edited and aligned with Sequencing Analysis 5.2 (Applied Biosystems) and Vector NTI (Informax Inc., Bethesda, MD, USA) software assistance and compared with other publicly available sequences using online BLAST (NCBI, NLM, Bethesda, MD, USA) analysis. ..

Article Title: The evolutionary history of Saccharomyces species inferred from completed mitochondrial genomes and revision in the ‘yeast mitochondrial genetic code’
Article Snippet: .. Individual contigs with mtDNA segments were assembled into a single molecule using the Vector NTI v.9.0 (v.10) software package from InforMax, Inc. .. Overall, 1–10 contigs were obtained covering 98–101% of the entire sequence, depending on the purification method ( ).

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    InforMax Inc vector nti suite 7 1
    ), supplemented with Vector <t>NTI</t> suite 7.1, are indicated by their locations,
    Vector Nti Suite 7 1, supplied by InforMax Inc, used in various techniques. Bioz Stars score: 85/100, based on 13 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/vector nti suite 7 1/product/InforMax Inc
    Average 85 stars, based on 13 article reviews
    Price from $9.99 to $1999.99
    vector nti suite 7 1 - by Bioz Stars, 2020-08
    85/100 stars
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    ), supplemented with Vector NTI suite 7.1, are indicated by their locations,

    Journal: Journal of Virology

    Article Title: Functional Genomics Analysis of Singapore Grouper Iridovirus: Complete Sequence Determination and Proteomic Analysis

    doi: 10.1128/JVI.78.22.12576-12590.2004

    Figure Lengend Snippet: ), supplemented with Vector NTI suite 7.1, are indicated by their locations,

    Article Snippet: A software package, Vector NTI Suite 7.1 (InforMax Inc., Frederick, Mass.), was applied to create the contigs, assemble the genome, identify ORFs, analyze presumptive genes, and draw the genomic map.

    Techniques: Plasmid Preparation

    The orthologous regions of  RTPOSON  elements between Nipponbare and 93-11. The differential locations of  RTPOSON  elements between Nipponbare and 93-11 were aligned and annotated by using the Vector NTI 7.0 program. The order shown is based on the number of TE insertion types, such as Ty1- copia , Ty3- gypsy , and  En-Spm . ( A – F ) Different types of TEs were inserted within  RTPOSON  in Nipponbare and 93-11. ( G ) An additional copy of  RTPOSON  within its structure in 93-11. ( H – K ) The TEs or functional genes were inserted in the structure of  RTPOSON  in Nipponbare. ( L ) The truncated gene structure of  RTPOSON  in 93-11. ( M ) The intact  RTPOSON  was inserted in Nipponbare. A scale and a key for the domains represented in the schematic representation are shown in the bottom right-hand corner. Abbreviations and color coding of domains: LTR, long terminal repeat (light blue);  gag-pol , gag and polyprotein (dark blue); genes are represented by red arrows; TEs are indicated by gray arrows; homolog flanking sequences between Nipponbare and 93-11 are represented by red and blue bars, respectively;  HYP , hypothetical proteins.

    Journal: Evolutionary Bioinformatics Online

    Article Title: Structural Diversity of a Novel LTR Retrotransposon, RTPOSON, in the Genus Oryza

    doi: 10.4137/EBO.S35158

    Figure Lengend Snippet: The orthologous regions of RTPOSON elements between Nipponbare and 93-11. The differential locations of RTPOSON elements between Nipponbare and 93-11 were aligned and annotated by using the Vector NTI 7.0 program. The order shown is based on the number of TE insertion types, such as Ty1- copia , Ty3- gypsy , and En-Spm . ( A – F ) Different types of TEs were inserted within RTPOSON in Nipponbare and 93-11. ( G ) An additional copy of RTPOSON within its structure in 93-11. ( H – K ) The TEs or functional genes were inserted in the structure of RTPOSON in Nipponbare. ( L ) The truncated gene structure of RTPOSON in 93-11. ( M ) The intact RTPOSON was inserted in Nipponbare. A scale and a key for the domains represented in the schematic representation are shown in the bottom right-hand corner. Abbreviations and color coding of domains: LTR, long terminal repeat (light blue); gag-pol , gag and polyprotein (dark blue); genes are represented by red arrows; TEs are indicated by gray arrows; homolog flanking sequences between Nipponbare and 93-11 are represented by red and blue bars, respectively; HYP , hypothetical proteins.

    Article Snippet: The internal sequence of each RTPOSON element was annotated for gag-pol and translated into amino acid sequences by using open reading frame (ORF) finder ( http://www.ncbi.nlm.nih.gov/gorf/gorf.html ) and Vector NTI 7.0 (InforMax Inc.).

    Techniques: Plasmid Preparation, Functional Assay

    The genetic organization of Saccharomyces mtDNA. For simpler comparison, the circular genomes, exported from Vector NTI, were aligned at the beginning of the large rRNA subunit ( rnl ). Protein-coding genes, ribosomal RNA, rnpB are marked as arrows and bar, tRNA genes as black lines, introns with white rectangles, intronic and free-standing ORFs by gray arrows and replication origins with black circles. Gene nomenclature follows the rules described in GOBASE ( atp for ATP synthetase subunits, cox for cytochrome oxidase subunits, cob for cytochrome b, rns for small rRNA ribosomal subunit, rnl for large rRNA ribosomal subunit, T2, C, H, etc. for particular tRNA coding genes, rps3 for ribosomal protein and rnpB for the RNA subunit of RNase P). Sizes are given on the bottom line in kbp.

    Journal: DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes

    Article Title: The evolutionary history of Saccharomyces species inferred from completed mitochondrial genomes and revision in the ‘yeast mitochondrial genetic code’

    doi: 10.1093/dnares/dsx026

    Figure Lengend Snippet: The genetic organization of Saccharomyces mtDNA. For simpler comparison, the circular genomes, exported from Vector NTI, were aligned at the beginning of the large rRNA subunit ( rnl ). Protein-coding genes, ribosomal RNA, rnpB are marked as arrows and bar, tRNA genes as black lines, introns with white rectangles, intronic and free-standing ORFs by gray arrows and replication origins with black circles. Gene nomenclature follows the rules described in GOBASE ( atp for ATP synthetase subunits, cox for cytochrome oxidase subunits, cob for cytochrome b, rns for small rRNA ribosomal subunit, rnl for large rRNA ribosomal subunit, T2, C, H, etc. for particular tRNA coding genes, rps3 for ribosomal protein and rnpB for the RNA subunit of RNase P). Sizes are given on the bottom line in kbp.

    Article Snippet: Individual contigs with mtDNA segments were assembled into a single molecule using the Vector NTI v.9.0 (v.10) software package from InforMax, Inc.

    Techniques: Plasmid Preparation