Structured Review

InforMax Inc vector nti
The genetic organization of Saccharomyces <t>mtDNA.</t> For simpler comparison, the circular genomes, exported from Vector <t>NTI,</t> were aligned at the beginning of the large rRNA subunit ( rnl ). Protein-coding genes, ribosomal RNA, rnpB are marked as arrows and bar, tRNA genes as black lines, introns with white rectangles, intronic and free-standing ORFs by gray arrows and replication origins with black circles. Gene nomenclature follows the rules described in GOBASE ( atp for ATP synthetase subunits, cox for cytochrome oxidase subunits, cob for cytochrome b, rns for small rRNA ribosomal subunit, rnl for large rRNA ribosomal subunit, T2, C, H, etc. for particular tRNA coding genes, rps3 for ribosomal protein and rnpB for the RNA subunit of RNase P). Sizes are given on the bottom line in kbp.
Vector Nti, supplied by InforMax Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/vector nti/product/InforMax Inc
Average 86 stars, based on 1 article reviews
Price from $9.99 to $1999.99
vector nti - by Bioz Stars, 2021-05
86/100 stars

Images

1) Product Images from "The evolutionary history of Saccharomyces species inferred from completed mitochondrial genomes and revision in the ‘yeast mitochondrial genetic code’"

Article Title: The evolutionary history of Saccharomyces species inferred from completed mitochondrial genomes and revision in the ‘yeast mitochondrial genetic code’

Journal: DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes

doi: 10.1093/dnares/dsx026

The genetic organization of Saccharomyces mtDNA. For simpler comparison, the circular genomes, exported from Vector NTI, were aligned at the beginning of the large rRNA subunit ( rnl ). Protein-coding genes, ribosomal RNA, rnpB are marked as arrows and bar, tRNA genes as black lines, introns with white rectangles, intronic and free-standing ORFs by gray arrows and replication origins with black circles. Gene nomenclature follows the rules described in GOBASE ( atp for ATP synthetase subunits, cox for cytochrome oxidase subunits, cob for cytochrome b, rns for small rRNA ribosomal subunit, rnl for large rRNA ribosomal subunit, T2, C, H, etc. for particular tRNA coding genes, rps3 for ribosomal protein and rnpB for the RNA subunit of RNase P). Sizes are given on the bottom line in kbp.
Figure Legend Snippet: The genetic organization of Saccharomyces mtDNA. For simpler comparison, the circular genomes, exported from Vector NTI, were aligned at the beginning of the large rRNA subunit ( rnl ). Protein-coding genes, ribosomal RNA, rnpB are marked as arrows and bar, tRNA genes as black lines, introns with white rectangles, intronic and free-standing ORFs by gray arrows and replication origins with black circles. Gene nomenclature follows the rules described in GOBASE ( atp for ATP synthetase subunits, cox for cytochrome oxidase subunits, cob for cytochrome b, rns for small rRNA ribosomal subunit, rnl for large rRNA ribosomal subunit, T2, C, H, etc. for particular tRNA coding genes, rps3 for ribosomal protein and rnpB for the RNA subunit of RNase P). Sizes are given on the bottom line in kbp.

Techniques Used: Plasmid Preparation

Related Articles

Sequencing:

Article Title: Biochemical Characterization of Paracoccidioides brasiliensis α-1,3-Glucanase Agn1p, and Its Functionality by Heterologous Expression in Schizosaccharomyces pombe
Article Snippet: The sequence has been deposited in GenBank (accession number EF679780). .. Computer-assisted Sequence Analyses Assembly of the nucleotide sequences and translated protein sequences were generated with the Vector NTI suit package (Vector NTI, InforMax, Inc., USA). ..

Article Title: Identification of the bacteria-binding peptide domain on salivary agglutinin (gp-340/DMBT1), a member of the scavenger receptor cysteine-rich superfamily.
Article Snippet: Bound bacteria were visualized with monoclonal antibody OMVU37, directed against S. mutans (31) with alkaline phosphatase-conjugated rabbit anti-mouse immunoglobulins (DAKO, Glostrup, Denmark) as the chromogenic substrate. .. Peptide Design and Synthesis—Based on the published amino acid sequence of gp-340 (7), consensus sequences of the 13 SRCR domains and 11 SIDs were determined using alignment software (Vector NTI, InforMax Inc., Oxford, UK). .. Nine peptides, together spanning the complete sequence, were synthesized by solid-phase peptide synthesis using the T-bag method adapted for Fmoc (N-(9-fluorenyl)methoxycarbonyl) chemistry (32).

Article Title: C-Type inactivation involves a significant decrease in the intracellular aqueous pore volume of Kv1.4 K+ channels expressed in Xenopus oocytes
Article Snippet: .. Side-chains were replaced using sequence homology modelling (Vector NTI, Informax, Inc., MD, USA) and energy minimized in Insight II. ..

Generated:

Article Title: Biochemical Characterization of Paracoccidioides brasiliensis α-1,3-Glucanase Agn1p, and Its Functionality by Heterologous Expression in Schizosaccharomyces pombe
Article Snippet: The sequence has been deposited in GenBank (accession number EF679780). .. Computer-assisted Sequence Analyses Assembly of the nucleotide sequences and translated protein sequences were generated with the Vector NTI suit package (Vector NTI, InforMax, Inc., USA). ..

Plasmid Preparation:

Article Title: Biochemical Characterization of Paracoccidioides brasiliensis α-1,3-Glucanase Agn1p, and Its Functionality by Heterologous Expression in Schizosaccharomyces pombe
Article Snippet: The sequence has been deposited in GenBank (accession number EF679780). .. Computer-assisted Sequence Analyses Assembly of the nucleotide sequences and translated protein sequences were generated with the Vector NTI suit package (Vector NTI, InforMax, Inc., USA). ..

Article Title: Identification of the bacteria-binding peptide domain on salivary agglutinin (gp-340/DMBT1), a member of the scavenger receptor cysteine-rich superfamily.
Article Snippet: Bound bacteria were visualized with monoclonal antibody OMVU37, directed against S. mutans (31) with alkaline phosphatase-conjugated rabbit anti-mouse immunoglobulins (DAKO, Glostrup, Denmark) as the chromogenic substrate. .. Peptide Design and Synthesis—Based on the published amino acid sequence of gp-340 (7), consensus sequences of the 13 SRCR domains and 11 SIDs were determined using alignment software (Vector NTI, InforMax Inc., Oxford, UK). .. Nine peptides, together spanning the complete sequence, were synthesized by solid-phase peptide synthesis using the T-bag method adapted for Fmoc (N-(9-fluorenyl)methoxycarbonyl) chemistry (32).

Article Title: C-Type inactivation involves a significant decrease in the intracellular aqueous pore volume of Kv1.4 K+ channels expressed in Xenopus oocytes
Article Snippet: .. Side-chains were replaced using sequence homology modelling (Vector NTI, Informax, Inc., MD, USA) and energy minimized in Insight II. ..

Article Title: The evolutionary history of Saccharomyces species inferred from completed mitochondrial genomes and revision in the ‘yeast mitochondrial genetic code’
Article Snippet: .. Individual contigs with mtDNA segments were assembled into a single molecule using the Vector NTI v.9.0 (v.10) software package from InforMax, Inc. .. Overall, 1–10 contigs were obtained covering 98–101% of the entire sequence, depending on the purification method ( ).

Article Title: Thermostable lipases from the extreme thermophilic anaerobic bacteria Thermoanaerobacter thermohydrosulfuricus SOL1 and Caldanaerobacter subterraneus subsp. tengcongensis
Article Snippet: The DNA-fragments were ligated and the circular DNA-fragments were used as templates for amplification of lipase fragments using specific primers (Table b). .. The program ContigExpress™ (Vector NTI® , software package for Mac OS users developed by InforMax, Inc., North Bethesda, MD, USA) was used for analysis of the sequences and to complete the lipase gene. .. AccepTor Vector Kit (Novagen) was used for IPTG-inducible expression of lipase genes in E. coli under the control of the T7lac promoter in pETBlue-1 vector.

Article Title: A novel sodium bicarbonate cotransporter-like gene in an ancient duplicated region: SLC4A9 at 5q31
Article Snippet: .. Sequences were first autoaligned using the AlignX feature of Vector NTI Suite 5.5. ..

Article Title: Molecular epidemiology of human sporotrichosis in Venezuela reveals high frequency of Sporothrix globosa
Article Snippet: Following PCR, amplicons were purified with the CONCERT™ Rapid PCR purification system (Life Technologies, USA) and sent for sequencing on both strands to Macrogen Inc (Seoul, Korea), with the same primers used for PCR. .. Assembly of the sequences was done with the Contig program within the Vector NTI suite (Vector NTI, InforMax, Inc, USA). ..

Article Title: Assessment of Parasitic Activity of Fusarium Strains Obtained from a Heterodera schachtii-Suppressive Soil
Article Snippet: Nucleotide sequences of the fungal rRNA-ITS clones were obtained by using the ABI PRISM BigDyeTM Terminators v3.0 Cycle Sequencing Kit (Foster City, CA) and a 3100 Genetic Analyzer (ABI). .. Nucleotide sequences from both strands were obtained for each clone and assembled using ContigExpress (Vector NTI, Informax Inc., Frederick, MD). .. The rRNA clones ranged from 540 to 564 nucleotides in length.

Software:

Article Title: Identification of the bacteria-binding peptide domain on salivary agglutinin (gp-340/DMBT1), a member of the scavenger receptor cysteine-rich superfamily.
Article Snippet: Bound bacteria were visualized with monoclonal antibody OMVU37, directed against S. mutans (31) with alkaline phosphatase-conjugated rabbit anti-mouse immunoglobulins (DAKO, Glostrup, Denmark) as the chromogenic substrate. .. Peptide Design and Synthesis—Based on the published amino acid sequence of gp-340 (7), consensus sequences of the 13 SRCR domains and 11 SIDs were determined using alignment software (Vector NTI, InforMax Inc., Oxford, UK). .. Nine peptides, together spanning the complete sequence, were synthesized by solid-phase peptide synthesis using the T-bag method adapted for Fmoc (N-(9-fluorenyl)methoxycarbonyl) chemistry (32).

Article Title: The evolutionary history of Saccharomyces species inferred from completed mitochondrial genomes and revision in the ‘yeast mitochondrial genetic code’
Article Snippet: .. Individual contigs with mtDNA segments were assembled into a single molecule using the Vector NTI v.9.0 (v.10) software package from InforMax, Inc. .. Overall, 1–10 contigs were obtained covering 98–101% of the entire sequence, depending on the purification method ( ).

Article Title: Thermostable lipases from the extreme thermophilic anaerobic bacteria Thermoanaerobacter thermohydrosulfuricus SOL1 and Caldanaerobacter subterraneus subsp. tengcongensis
Article Snippet: The DNA-fragments were ligated and the circular DNA-fragments were used as templates for amplification of lipase fragments using specific primers (Table b). .. The program ContigExpress™ (Vector NTI® , software package for Mac OS users developed by InforMax, Inc., North Bethesda, MD, USA) was used for analysis of the sequences and to complete the lipase gene. .. AccepTor Vector Kit (Novagen) was used for IPTG-inducible expression of lipase genes in E. coli under the control of the T7lac promoter in pETBlue-1 vector.

Similar Products

  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
  • 86
    InforMax Inc vector nti suite 7 1
    ), supplemented with Vector <t>NTI</t> suite 7.1, are indicated by their locations,
    Vector Nti Suite 7 1, supplied by InforMax Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/vector nti suite 7 1/product/InforMax Inc
    Average 86 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    vector nti suite 7 1 - by Bioz Stars, 2021-05
    86/100 stars
      Buy from Supplier

    86
    InforMax Inc vector nti version 4 0 deluxe
    Transcripts in the region surrounding gene 4. Calculated mRNA sizes (in kilobase pairs) were based on the actual sequence between potential TATA box sequences and poly(A) recognition sequences (AATAAA) in the γHV68 genome as analyzed with the Vector <t>NTI</t> version 4.0 Deluxe program (Informax Inc.). RNA molecular size markers, in logarithmic scale, were plotted as a function of distance (in centimeters) from the Northern blots, and measured mRNA sizes were extrapolated from those graphs. For gene 4 and gene 6 transcript sizes, the sizes from the independently probed blots were averaged. The data are from a single experiment.
    Vector Nti Version 4 0 Deluxe, supplied by InforMax Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/vector nti version 4 0 deluxe/product/InforMax Inc
    Average 86 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    vector nti version 4 0 deluxe - by Bioz Stars, 2021-05
    86/100 stars
      Buy from Supplier

    86
    InforMax Inc vector nti
    The genetic organization of Saccharomyces <t>mtDNA.</t> For simpler comparison, the circular genomes, exported from Vector <t>NTI,</t> were aligned at the beginning of the large rRNA subunit ( rnl ). Protein-coding genes, ribosomal RNA, rnpB are marked as arrows and bar, tRNA genes as black lines, introns with white rectangles, intronic and free-standing ORFs by gray arrows and replication origins with black circles. Gene nomenclature follows the rules described in GOBASE ( atp for ATP synthetase subunits, cox for cytochrome oxidase subunits, cob for cytochrome b, rns for small rRNA ribosomal subunit, rnl for large rRNA ribosomal subunit, T2, C, H, etc. for particular tRNA coding genes, rps3 for ribosomal protein and rnpB for the RNA subunit of RNase P). Sizes are given on the bottom line in kbp.
    Vector Nti, supplied by InforMax Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/vector nti/product/InforMax Inc
    Average 86 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    vector nti - by Bioz Stars, 2021-05
    86/100 stars
      Buy from Supplier

    Image Search Results


    ), supplemented with Vector NTI suite 7.1, are indicated by their locations,

    Journal: Journal of Virology

    Article Title: Functional Genomics Analysis of Singapore Grouper Iridovirus: Complete Sequence Determination and Proteomic Analysis

    doi: 10.1128/JVI.78.22.12576-12590.2004

    Figure Lengend Snippet: ), supplemented with Vector NTI suite 7.1, are indicated by their locations,

    Article Snippet: Prediction of presumptive genes was carried out by using the viral gene prediction program under the website supplemented with Vector NTI suite 7.1.

    Techniques: Plasmid Preparation

    Transcripts in the region surrounding gene 4. Calculated mRNA sizes (in kilobase pairs) were based on the actual sequence between potential TATA box sequences and poly(A) recognition sequences (AATAAA) in the γHV68 genome as analyzed with the Vector NTI version 4.0 Deluxe program (Informax Inc.). RNA molecular size markers, in logarithmic scale, were plotted as a function of distance (in centimeters) from the Northern blots, and measured mRNA sizes were extrapolated from those graphs. For gene 4 and gene 6 transcript sizes, the sizes from the independently probed blots were averaged. The data are from a single experiment.

    Journal: Journal of Virology

    Article Title: Murine Gammaherpesvirus 68 Encodes a Functional Regulator of Complement Activation

    doi:

    Figure Lengend Snippet: Transcripts in the region surrounding gene 4. Calculated mRNA sizes (in kilobase pairs) were based on the actual sequence between potential TATA box sequences and poly(A) recognition sequences (AATAAA) in the γHV68 genome as analyzed with the Vector NTI version 4.0 Deluxe program (Informax Inc.). RNA molecular size markers, in logarithmic scale, were plotted as a function of distance (in centimeters) from the Northern blots, and measured mRNA sizes were extrapolated from those graphs. For gene 4 and gene 6 transcript sizes, the sizes from the independently probed blots were averaged. The data are from a single experiment.

    Article Snippet: The γHV68 genome sequence and putative ORFs were analyzed on Vector NTI version 4.0 Deluxe (Informax Inc., Gaithersburg, Md.) as previously described ( ).

    Techniques: Sequencing, Plasmid Preparation, Northern Blot

    The genetic organization of Saccharomyces mtDNA. For simpler comparison, the circular genomes, exported from Vector NTI, were aligned at the beginning of the large rRNA subunit ( rnl ). Protein-coding genes, ribosomal RNA, rnpB are marked as arrows and bar, tRNA genes as black lines, introns with white rectangles, intronic and free-standing ORFs by gray arrows and replication origins with black circles. Gene nomenclature follows the rules described in GOBASE ( atp for ATP synthetase subunits, cox for cytochrome oxidase subunits, cob for cytochrome b, rns for small rRNA ribosomal subunit, rnl for large rRNA ribosomal subunit, T2, C, H, etc. for particular tRNA coding genes, rps3 for ribosomal protein and rnpB for the RNA subunit of RNase P). Sizes are given on the bottom line in kbp.

    Journal: DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes

    Article Title: The evolutionary history of Saccharomyces species inferred from completed mitochondrial genomes and revision in the ‘yeast mitochondrial genetic code’

    doi: 10.1093/dnares/dsx026

    Figure Lengend Snippet: The genetic organization of Saccharomyces mtDNA. For simpler comparison, the circular genomes, exported from Vector NTI, were aligned at the beginning of the large rRNA subunit ( rnl ). Protein-coding genes, ribosomal RNA, rnpB are marked as arrows and bar, tRNA genes as black lines, introns with white rectangles, intronic and free-standing ORFs by gray arrows and replication origins with black circles. Gene nomenclature follows the rules described in GOBASE ( atp for ATP synthetase subunits, cox for cytochrome oxidase subunits, cob for cytochrome b, rns for small rRNA ribosomal subunit, rnl for large rRNA ribosomal subunit, T2, C, H, etc. for particular tRNA coding genes, rps3 for ribosomal protein and rnpB for the RNA subunit of RNase P). Sizes are given on the bottom line in kbp.

    Article Snippet: Individual contigs with mtDNA segments were assembled into a single molecule using the Vector NTI v.9.0 (v.10) software package from InforMax, Inc.

    Techniques: Plasmid Preparation