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massarray typeranalyzer software version 4.0  (Sequenom)

 
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    Sequenom massarray typeranalyzer software version 4.0
    Massarray Typeranalyzer Software Version 4.0, supplied by Sequenom, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/typeranalyzer+software/massarray+assay+design+3+0+software/pm36632909-69-20-25
    Average 90 stars, based on 1 article reviews
    massarray typeranalyzer software version 4.0 - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Software:

    Article Title: The Value of FLG Null Mutations in Predicting Treatment Response in Atopic Dermatitis: An Observational Study in Finnish Patients.
    Article Snippet: Both PCR and extension primers were designed using MassARRAY Assay Design software (Sequenom). .. The data was collected using the MassARRAY Compact System (Sequenom) and the genotypes were called using TyperAnalyzer software (Sequenom). ..

    Article Title: GDNF Gene Is Associated With Tourette Syndrome in a Family Study
    Article Snippet: The SNPs selected for replication were genotyped with TaqMan SNP Genotyping Assay (Applied Biosciences Hispania, Alcobendas, Madrid, Spain) performed in a LightCycler480 instrument (Roche Applied Science, Indianapolis, IN, USA). .. Each run of 25 multiplexed assays was carefully inspected with TyperAnalyzer software (Sequenom Inc.), and evident errors, according to the manufacturer’s guidelines, were manually corrected to ensure optimal genotyping. ..

    Article Title: GDNF Gene Is Associated With Tourette Syndrome in a Family Study
    Article Snippet: The SNPs selected for replication were genotyped with TaqMan SNP Genotyping Assay (Applied Biosciences Hispania, Alcobendas, Madrid, Spain) performed in a LightCycler480 instrument (Roche Applied Science, Indianapolis, IN, USA). .. Quality Control Each run of 25 multiplexed assays was carefully inspected with TyperAnalyzer software (Sequenom Inc.), and evident errors, according to the manufacturer’s guidelines, were manually corrected to ensure optimal genotyping. ..

    Article Title: Whole Exome Sequencing Identifies Rare Protein-Coding Variants in Behçet's Disease.
    Article Snippet: Genotyping assays were performed using the MassArray System according to the standard protocols of the manufacturer (Agena Bioscience). .. Single-nucleotide polymorphism (SNP) calls were automatically generated using TyperAnalyzer software (Sequenom) and then validated manually to exclude SNPs with ambiguous spectra. ..

    Article Title: Positive selection of lactase persistence among people of Southern Arabia.
    Article Snippet: Department of Basic Medical Sciences, Mohammed Bin Rashid University, Dubai Healthcare City, Dubai, UAE Laboratory of Molecular Anthropology and Centre for Genome Biology, Department of Biological, Geological and Environmental Sciences, University of Bologna, 40126, Italy Department of Biochemistry & Molecular Biology, Sana’a University, Sana'a, Yemen National Geographic and Ronin Institute, Montclair, NJ University of Bologna Medical School, Bologna, Italy Department of Clinical Biochemistry, College of Medicine and Health Sciences, Sultan Qaboos University, Muscat, Oman Correspondence Marco Sazzini, Department of Biological, Geological & Environmental Sciences, University of Bologna, 3, Selmi, 40126, Bologna, Italy.. Email: marco.sazzini2@unibo.it Funding Information PRIN 2010EL8TXP_006 to DL Abstract


    Article Title: Inferring the genetic history of lactase persistence along the Italian peninsula from a large genomic interval surrounding the LCT gene.
    Article Snippet: Objective: Although genetic variants related to lactase persistence in European populations were supposed to have firstly undergone positive selection in farmers from the Balkans and Central Europe, demographic and evolutionary dynamics that subsequently shaped the distribution of this adaptive trait across the continent have still to be elucidated.. To deepen the knowledge about potential routes of diffusion of lactase persistence to Western Europe we investigated variation at a large genomic region surrounding the LCT gene along the Italian peninsula, a geographical area that played a key role in population movements responsible for Neolithic diffusion across Europe.. Methods: By genotyping 40 highly selected SNPs in more than 400 Italian individuals we described gradients of nucleotide and haplotype variation potentially related to lactase persistence and compared them with those observed in several European and Mediterranean human groups.

    Article Title: Independent replication of polymorphisms predicting toxicity in breast cancer patients randomized between dose-dense and docetaxel-containing adjuvant chemotherapy
    Article Snippet: A customized, mass-spectrometry based genotyping assay (Sequenom MassARRAY platform, Sequenom Inc, CA, USA) was designed to analyze these SNPs. .. Genotypes were determined using Sequenom’s TyperAnalyzer software. ..

    Control:

    Article Title: GDNF Gene Is Associated With Tourette Syndrome in a Family Study
    Article Snippet: The SNPs selected for replication were genotyped with TaqMan SNP Genotyping Assay (Applied Biosciences Hispania, Alcobendas, Madrid, Spain) performed in a LightCycler480 instrument (Roche Applied Science, Indianapolis, IN, USA). .. Quality Control Each run of 25 multiplexed assays was carefully inspected with TyperAnalyzer software (Sequenom Inc.), and evident errors, according to the manufacturer’s guidelines, were manually corrected to ensure optimal genotyping. ..

    Generated:

    Article Title: Whole Exome Sequencing Identifies Rare Protein-Coding Variants in Behçet's Disease.
    Article Snippet: Genotyping assays were performed using the MassArray System according to the standard protocols of the manufacturer (Agena Bioscience). .. Single-nucleotide polymorphism (SNP) calls were automatically generated using TyperAnalyzer software (Sequenom) and then validated manually to exclude SNPs with ambiguous spectra. ..



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    Sequenom massarray typeranalyzer software version 4.0
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    Sequenom typeranalyzer 4.0 software
    This figure shows the 4 steps of the SNPflow data analysis wizard. In brief, the first step allows the uploading of either SDS files (ABI 7900HT) or TyperAnalyzer 4.0 (MassARRAY) files. For TyperAnalyzer files, a second input field asks for the name of the result group under which results shall be grouped. The second step checks the validity of the IDs found in the uploaded and reports IDs, which are not found in the study definition and shall thus be deleted. Step 3 converts the found genotype designations to standard genotypes and allows entering the name of the result, the operator name, an optional comment and the rs-number of the SNP in HapMap and the 1000 Genomes Project. This is useful in case that a SNP ID changed between the current dbSNP release and the dbSNP release used in HapMap, as happened for some SNPs. For convenience, the result name is automatically pre-set as HapMap lookup. In multiplex assays, pagination allows navigating through the single SNPs. For quality reasons a manual confirmation of each conversion is required (Checkbox “All settings are correct”). Finally, step 4 confirms the successful analysis and brings the user to the report. Exemplary abbreviation used in this figure: NTC, Non-template control; ER, annulled samples (“error”), i.e. DNA samples present on the plates, but known to be flawed. The IDs of these samples were thus replaced with “ER” in order to avoid data collection for these samples.
    Typeranalyzer 4.0 Software, supplied by Sequenom, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/typeranalyzer+software/typeranalyzer+4+0+software/pmc03602247-61-12-11
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    This figure shows the 4 steps of the SNPflow data analysis wizard. In brief, the first step allows the uploading of either SDS files (ABI 7900HT) or TyperAnalyzer 4.0 (MassARRAY) files. For TyperAnalyzer files, a second input field asks for the name of the result group under which results shall be grouped. The second step checks the validity of the IDs found in the uploaded and reports IDs, which are not found in the study definition and shall thus be deleted. Step 3 converts the found genotype designations to standard genotypes and allows entering the name of the result, the operator name, an optional comment and the rs-number of the SNP in HapMap and the 1000 Genomes Project. This is useful in case that a SNP ID changed between the current dbSNP release and the dbSNP release used in HapMap, as happened for some SNPs. For convenience, the result name is automatically pre-set as HapMap lookup. In multiplex assays, pagination allows navigating through the single SNPs. For quality reasons a manual confirmation of each conversion is required (Checkbox “All settings are correct”). Finally, step 4 confirms the successful analysis and brings the user to the report. Exemplary abbreviation used in this figure: NTC, Non-template control; ER, annulled samples (“error”), i.e. DNA samples present on the plates, but known to be flawed. The IDs of these samples were thus replaced with “ER” in order to avoid data collection for these samples.

    Journal: PLoS ONE

    Article Title: SNPflow: A Lightweight Application for the Processing, Storing and Automatic Quality Checking of Genotyping Assays

    doi: 10.1371/journal.pone.0059508

    Figure Lengend Snippet: This figure shows the 4 steps of the SNPflow data analysis wizard. In brief, the first step allows the uploading of either SDS files (ABI 7900HT) or TyperAnalyzer 4.0 (MassARRAY) files. For TyperAnalyzer files, a second input field asks for the name of the result group under which results shall be grouped. The second step checks the validity of the IDs found in the uploaded and reports IDs, which are not found in the study definition and shall thus be deleted. Step 3 converts the found genotype designations to standard genotypes and allows entering the name of the result, the operator name, an optional comment and the rs-number of the SNP in HapMap and the 1000 Genomes Project. This is useful in case that a SNP ID changed between the current dbSNP release and the dbSNP release used in HapMap, as happened for some SNPs. For convenience, the result name is automatically pre-set as HapMap lookup. In multiplex assays, pagination allows navigating through the single SNPs. For quality reasons a manual confirmation of each conversion is required (Checkbox “All settings are correct”). Finally, step 4 confirms the successful analysis and brings the user to the report. Exemplary abbreviation used in this figure: NTC, Non-template control; ER, annulled samples (“error”), i.e. DNA samples present on the plates, but known to be flawed. The IDs of these samples were thus replaced with “ER” in order to avoid data collection for these samples.

    Article Snippet: SNPflow is able to deal with results coming both from the Sequenom TyperAnalyzer 4.0 software and the ABI SDS software version 2.2.2, since these two platforms are present in our laboratory and we were thus able to implement SNPflow respectively.

    Techniques: Multiplex Assay