thermo scientific ltq orbitrapxl  (Thermo Fisher)


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    Thermo Fisher thermo scientific ltq orbitrapxl
    Thermo Scientific Ltq Orbitrapxl, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 91/100, based on 2 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/thermo scientific ltq orbitrapxl/product/Thermo Fisher
    Average 91 stars, based on 2 article reviews
    Price from $9.99 to $1999.99
    thermo scientific ltq orbitrapxl - by Bioz Stars, 2020-07
    91/100 stars

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    Article Title: Green-Light-Sensitive BODIPY Photoprotecting Groups for Amines
    Article Snippet: High-resolution mass spectrometric measurements were performed using a Thermo scientific LTQ OrbitrapXL (ion trap) spectrometer with ESI ionization.

    Mass Spectrometry:

    Article Title: Characterization of the single-subunit oligosaccharyltransferase STT3A from Trypanosoma brucei using synthetic peptides and lipid-linked oligosaccharide analogs
    Article Snippet: .. MS spectra, recorded on a Thermo Scientific LTQ OrbitrapXL were provided by the Mass Spectrometry service of the Department of Chemistry and Biochemistry at the University of Berne. ..

    Article Title: Chemical space guided discovery of antimicrobial bridged bicyclic peptides against Pseudomonas aeruginosa and its biofilms and its biofilms †Electronic supplementary information (ESI) available: Characterization of all compounds, crystallography tables, and characterization of all compounds. See DOI: 10.1039/c7sc01314
    Article Snippet: .. MS spectra, recorded on a Thermo Scientific LTQ OrbitrapXL, were provided by the MS analytical service of the Department of Chemistry and Biochemistry at the University of Bern (group PD Dr Stefan Schürch). .. Solid-phase peptide synthesis The peptides were synthesized as mixture of isomers a and b by SPPS, purified by preparative HPLC, and subsequently subjected to cyclization in solution.

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    Thermo Fisher ltq orbitrap velos mass spectrometer
    A schematic workflow illustrating the steps involved in the differential analysis of RA and OA synovial fluid proteome. Proteins from RA and OA synovial fluid were extracted and depleted to remove the 14 most abundant proteins using multiple affinity removal system, Human-14. The depleted protein from RA and OA were then digested with trypsin and labeled with iTRAQ reagents, 117 and 116 respectively. The labeled samples were pooled and subjected to fractionation using strong cation exchange chromatography. The fractions were then analyzed on a <t>LTQ-Orbitrap</t> <t>Velos</t> mass spectrometer. The MS/MS data obtained was searched against Human RefSeq 50 database using Sequest and Mascot search algorithms. Validation of the iTRAQ quantitation data was carried out using multiple reaction monitoring and Western blot.
    Ltq Orbitrap Velos Mass Spectrometer, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 94/100, based on 219 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/ltq orbitrap velos mass spectrometer/product/Thermo Fisher
    Average 94 stars, based on 219 article reviews
    Price from $9.99 to $1999.99
    ltq orbitrap velos mass spectrometer - by Bioz Stars, 2020-07
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    95
    Thermo Fisher ltq orbitrap xl mass spectrometer
    (A) Scheme of the methods used to analyze BMSCs Proteins identification was done on an <t>orbitrap</t> <t>LTQ</t> XL with a protein threshold of 99% (FDR 0.1%) and peptide threshold of 97% (FDR 0.1%) and contained at least 2 identified peptides as parameters ( Supplementary data 1 2 ). (B) Label free quantification of immune modulators, neurotrophic and growth factors and apoptotic molecules identified in conditioned media obtained from BMSCs, spinal cord lesion (SCI) or control (non injured) using Scaffold_4.0.6.1. Label-free quantification was done on top3 of the total ion current (TIC). (BMP 1: Bone morphogenic protein 1, Cdh13: T-Cadherin, CLEC11a: C-type lectin domain family 11 member A CTGF: connective tissue growth factor, Epha 3: Ephrin A isoform 3, Epdr1: Ependymin related protein 1, FAM3C: family with sequence similarity 3, member C Gal 1: galectin 1; GAP-43: Growth associated protein 43, Ltbp: Latent TGF-beta binding protein, IgFbp 7: Insulin growth factor binding protein 7, MIF: macrophage inhibiting factor, PDGF: Platelet derived growth factor, PGF: placenta growth factor, spondin 2, SPARC, TIMP-1: Tissue inhibitor metalloproteinase 1 2).
    Ltq Orbitrap Xl Mass Spectrometer, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 95/100, based on 2060 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Average 95 stars, based on 2060 article reviews
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    85
    Thermo Fisher high mass accuracy high resolution mass spectrometer
    Validation of very low abundance cardiolipin isomeric species by product ion analysis using an Orbitrap-LTQ <t>mass</t> <t>spectrometer.</t> Product ion mass spectra of representative myocardial cardiolipin species were acquired using a <t>high</t> mass <t>accuracy/resolution</t>
    High Mass Accuracy High Resolution Mass Spectrometer, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 85/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    94
    Thermo Fisher ltq orbitrap xl
    Analysis of MASL protein subunits. ( a ) MASL from Sigma (lane 1) or Sentrimed (lane 2) was analyzed by reducing and nonreducing SDS-PAGE. ( b ) Coomassie stained bands were excised, extracted and digested with trypsin, reduced and alkylated with iodoacetamide, and sequenced using data dependent acquisition by LC-MS/MS on a Thermo Scientific <t>LTQ</t> <t>Orbitrap</t> XL. All peptides were identical in primary sequence and contained a single cysteine at residue 243 (bold in figure).
    Ltq Orbitrap Xl, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 94/100, based on 567 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/ltq orbitrap xl/product/Thermo Fisher
    Average 94 stars, based on 567 article reviews
    Price from $9.99 to $1999.99
    ltq orbitrap xl - by Bioz Stars, 2020-07
    94/100 stars
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    A schematic workflow illustrating the steps involved in the differential analysis of RA and OA synovial fluid proteome. Proteins from RA and OA synovial fluid were extracted and depleted to remove the 14 most abundant proteins using multiple affinity removal system, Human-14. The depleted protein from RA and OA were then digested with trypsin and labeled with iTRAQ reagents, 117 and 116 respectively. The labeled samples were pooled and subjected to fractionation using strong cation exchange chromatography. The fractions were then analyzed on a LTQ-Orbitrap Velos mass spectrometer. The MS/MS data obtained was searched against Human RefSeq 50 database using Sequest and Mascot search algorithms. Validation of the iTRAQ quantitation data was carried out using multiple reaction monitoring and Western blot.

    Journal: Clinical proteomics

    Article Title: Differential proteomic analysis of synovial fluid from rheumatoid arthritis and osteoarthritis patients

    doi: 10.1186/1559-0275-11-1

    Figure Lengend Snippet: A schematic workflow illustrating the steps involved in the differential analysis of RA and OA synovial fluid proteome. Proteins from RA and OA synovial fluid were extracted and depleted to remove the 14 most abundant proteins using multiple affinity removal system, Human-14. The depleted protein from RA and OA were then digested with trypsin and labeled with iTRAQ reagents, 117 and 116 respectively. The labeled samples were pooled and subjected to fractionation using strong cation exchange chromatography. The fractions were then analyzed on a LTQ-Orbitrap Velos mass spectrometer. The MS/MS data obtained was searched against Human RefSeq 50 database using Sequest and Mascot search algorithms. Validation of the iTRAQ quantitation data was carried out using multiple reaction monitoring and Western blot.

    Article Snippet: LC-MS/MS analysis Tandem mass spectrometric analysis of the iTRAQ labeled peptides were carried out using LTQ-Orbitrap Velos mass spectrometer (Thermo Scientific, Bremen, Germany) interfaced with Easy nanoLC II (previously Proxeon, Thermo Scientific, Bremen, Germany).

    Techniques: Labeling, Fractionation, Chromatography, Mass Spectrometry, Quantitation Assay, Western Blot

    (A) Scheme of the methods used to analyze BMSCs Proteins identification was done on an orbitrap LTQ XL with a protein threshold of 99% (FDR 0.1%) and peptide threshold of 97% (FDR 0.1%) and contained at least 2 identified peptides as parameters ( Supplementary data 1 2 ). (B) Label free quantification of immune modulators, neurotrophic and growth factors and apoptotic molecules identified in conditioned media obtained from BMSCs, spinal cord lesion (SCI) or control (non injured) using Scaffold_4.0.6.1. Label-free quantification was done on top3 of the total ion current (TIC). (BMP 1: Bone morphogenic protein 1, Cdh13: T-Cadherin, CLEC11a: C-type lectin domain family 11 member A CTGF: connective tissue growth factor, Epha 3: Ephrin A isoform 3, Epdr1: Ependymin related protein 1, FAM3C: family with sequence similarity 3, member C Gal 1: galectin 1; GAP-43: Growth associated protein 43, Ltbp: Latent TGF-beta binding protein, IgFbp 7: Insulin growth factor binding protein 7, MIF: macrophage inhibiting factor, PDGF: Platelet derived growth factor, PGF: placenta growth factor, spondin 2, SPARC, TIMP-1: Tissue inhibitor metalloproteinase 1 2).

    Journal: Scientific Reports

    Article Title: Modulation properties of factors released by bone marrow stromal cells on activated microglia: an in vitro study

    doi: 10.1038/srep07514

    Figure Lengend Snippet: (A) Scheme of the methods used to analyze BMSCs Proteins identification was done on an orbitrap LTQ XL with a protein threshold of 99% (FDR 0.1%) and peptide threshold of 97% (FDR 0.1%) and contained at least 2 identified peptides as parameters ( Supplementary data 1 2 ). (B) Label free quantification of immune modulators, neurotrophic and growth factors and apoptotic molecules identified in conditioned media obtained from BMSCs, spinal cord lesion (SCI) or control (non injured) using Scaffold_4.0.6.1. Label-free quantification was done on top3 of the total ion current (TIC). (BMP 1: Bone morphogenic protein 1, Cdh13: T-Cadherin, CLEC11a: C-type lectin domain family 11 member A CTGF: connective tissue growth factor, Epha 3: Ephrin A isoform 3, Epdr1: Ependymin related protein 1, FAM3C: family with sequence similarity 3, member C Gal 1: galectin 1; GAP-43: Growth associated protein 43, Ltbp: Latent TGF-beta binding protein, IgFbp 7: Insulin growth factor binding protein 7, MIF: macrophage inhibiting factor, PDGF: Platelet derived growth factor, PGF: placenta growth factor, spondin 2, SPARC, TIMP-1: Tissue inhibitor metalloproteinase 1 2).

    Article Snippet: The chromatography system was coupled to a Thermo Scientific LTQ-Orbitrap XL mass spectrometer programmed to acquire in data-dependent mode.

    Techniques: Sequencing, Binding Assay, Derivative Assay

    Validation of very low abundance cardiolipin isomeric species by product ion analysis using an Orbitrap-LTQ mass spectrometer. Product ion mass spectra of representative myocardial cardiolipin species were acquired using a high mass accuracy/resolution

    Journal: Journal of Lipid Research

    Article Title: Dynamic simulation of cardiolipin remodeling: greasing the wheels for an interpretative approach to lipidomics [S]

    doi: 10.1194/jlr.M004796

    Figure Lengend Snippet: Validation of very low abundance cardiolipin isomeric species by product ion analysis using an Orbitrap-LTQ mass spectrometer. Product ion mass spectra of representative myocardial cardiolipin species were acquired using a high mass accuracy/resolution

    Article Snippet: Product-ion analyses of cardiolipin molecular species by using a high mass accuracy/high resolution mass spectrometer [i.e., Orbitrap-LTQ mass spectrometer (Thermo Scientific San Jose, CA)] were also preformed as previously described ( ) to verify the presence of very low abundance cardiolipin isomers.

    Techniques: Mass Spectrometry

    Analysis of MASL protein subunits. ( a ) MASL from Sigma (lane 1) or Sentrimed (lane 2) was analyzed by reducing and nonreducing SDS-PAGE. ( b ) Coomassie stained bands were excised, extracted and digested with trypsin, reduced and alkylated with iodoacetamide, and sequenced using data dependent acquisition by LC-MS/MS on a Thermo Scientific LTQ Orbitrap XL. All peptides were identical in primary sequence and contained a single cysteine at residue 243 (bold in figure).

    Journal: PLoS ONE

    Article Title: Plant Lectin Can Target Receptors Containing Sialic Acid, Exemplified by Podoplanin, to Inhibit Transformed Cell Growth and Migration

    doi: 10.1371/journal.pone.0041845

    Figure Lengend Snippet: Analysis of MASL protein subunits. ( a ) MASL from Sigma (lane 1) or Sentrimed (lane 2) was analyzed by reducing and nonreducing SDS-PAGE. ( b ) Coomassie stained bands were excised, extracted and digested with trypsin, reduced and alkylated with iodoacetamide, and sequenced using data dependent acquisition by LC-MS/MS on a Thermo Scientific LTQ Orbitrap XL. All peptides were identical in primary sequence and contained a single cysteine at residue 243 (bold in figure).

    Article Snippet: Extracted protein was reduced and alkylated with iodoacetamide, and sequenced using data dependent acquisition by LC-MS/MS on a Thermo Scientific LTQ Orbitrap XL.

    Techniques: SDS Page, Staining, Liquid Chromatography with Mass Spectroscopy, Mass Spectrometry, Sequencing