non o157 stec strains  (ATCC)


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    ATCC non o157 stec strains
    Comparison of ATCC MP-9 panel genomes BRIG comparison of six sequenced strains, along with Escherichia coli strains <t>O157:H7</t> EC4115 and strain K-12 substrain MG1665, referenced to the 5,840,137 bp chromosome of BAA-2196 (O26:H11). CDS are presented on the +/−strands as blue arrows and functional annotations for virulence genes and other loci of interest are highlighted as shown in the legend. Query genomes are color-coded, and the order plotted in the circle reflects the inferred phylogenomic relationships.
    Non O157 Stec Strains, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Pathogenomes and virulence profiles of representative big six non-O157 serogroup Shiga toxin-producing Escherichia coli"

    Article Title: Pathogenomes and virulence profiles of representative big six non-O157 serogroup Shiga toxin-producing Escherichia coli

    Journal: Frontiers in Microbiology

    doi: 10.3389/fmicb.2024.1364026

    Comparison of ATCC MP-9 panel genomes BRIG comparison of six sequenced strains, along with Escherichia coli strains O157:H7 EC4115 and strain K-12 substrain MG1665, referenced to the 5,840,137 bp chromosome of BAA-2196 (O26:H11). CDS are presented on the +/−strands as blue arrows and functional annotations for virulence genes and other loci of interest are highlighted as shown in the legend. Query genomes are color-coded, and the order plotted in the circle reflects the inferred phylogenomic relationships.
    Figure Legend Snippet: Comparison of ATCC MP-9 panel genomes BRIG comparison of six sequenced strains, along with Escherichia coli strains O157:H7 EC4115 and strain K-12 substrain MG1665, referenced to the 5,840,137 bp chromosome of BAA-2196 (O26:H11). CDS are presented on the +/−strands as blue arrows and functional annotations for virulence genes and other loci of interest are highlighted as shown in the legend. Query genomes are color-coded, and the order plotted in the circle reflects the inferred phylogenomic relationships.

    Techniques Used: Comparison, Functional Assay

    Phylogenomic position of ATCC-MP9 strains The relatedness of panel strains, including O157:H7 strain EC4115, was determined using MLST in Ridom SeqSphere+: (A) targeted seven-gene MLST accessed in EnteroBase. Numbers on connecting branches indicate the number of genes with differing allele status, and (B) cgMLST-based phylogeny using the closed chromosome of E. coli strain K12 subst. MG1655 as seed. The shared gene inventory was determined at 4,304 genes, according to the inclusion/exclusion criteria of the SeqSphere+ Target Definer and is comprised of 3,148 core and 908 accessory loci. Colors denote ST-classifications established in (A) .
    Figure Legend Snippet: Phylogenomic position of ATCC-MP9 strains The relatedness of panel strains, including O157:H7 strain EC4115, was determined using MLST in Ridom SeqSphere+: (A) targeted seven-gene MLST accessed in EnteroBase. Numbers on connecting branches indicate the number of genes with differing allele status, and (B) cgMLST-based phylogeny using the closed chromosome of E. coli strain K12 subst. MG1655 as seed. The shared gene inventory was determined at 4,304 genes, according to the inclusion/exclusion criteria of the SeqSphere+ Target Definer and is comprised of 3,148 core and 908 accessory loci. Colors denote ST-classifications established in (A) .

    Techniques Used:

    o157 stec strain atcc 43888  (ATCC)


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    ATCC o157 stec strain atcc 43888
    O157 Stec Strain Atcc 43888, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    103 stec strain  (ATCC)


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    ATCC 103 stec strain
    103 Stec Strain, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    non stec host strains  (ATCC)


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    ATCC non stec host strains
    Non Stec Host Strains, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    103 stec strain  (ATCC)


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    ATCC 103 stec strain
    103 Stec Strain, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    o157 stec strain atcc 43888  (ATCC)


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    ATCC o157 stec strain atcc 43888
    Genetic virulence profile of STEC strains isolated in each butchery
    O157 Stec Strain Atcc 43888, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "First report of the prevalence of Shiga toxinproducing Escherichia coli in ground beef in Quindío, Colombia"

    Article Title: First report of the prevalence of Shiga toxinproducing Escherichia coli in ground beef in Quindío, Colombia

    Journal: Biomédica

    doi: 10.7705/biomedica.7004

    Genetic virulence profile of STEC strains isolated in each butchery
    Figure Legend Snippet: Genetic virulence profile of STEC strains isolated in each butchery

    Techniques Used: Isolation

    escherichia coli stec strains  (ATCC)


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    ATCC escherichia coli stec strains
    Escherichia Coli Stec Strains, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    stec o103 stx1a strain  (ATCC)


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    ATCC stec o103 stx1a strain
    Stec O103 Stx1a Strain, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    serotype stec strain panel  (ATCC)


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    ATCC serotype stec strain panel
    Serotype Stec Strain Panel, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    stec o103 stx1a strain  (ATCC)


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    ATCC stec o103 stx1a strain
    The bacterial strains and plasmids used in this study
    Stec O103 Stx1a Strain, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "A broadly immunogenic polyvalent Shigella multiepitope fusion antigen protein protects against Shigella sonnei and Shigella flexneri lethal pulmonary challenges in mice"

    Article Title: A broadly immunogenic polyvalent Shigella multiepitope fusion antigen protein protects against Shigella sonnei and Shigella flexneri lethal pulmonary challenges in mice

    Journal: Infection and Immunity

    doi: 10.1128/iai.00316-23

    The bacterial strains and plasmids used in this study
    Figure Legend Snippet: The bacterial strains and plasmids used in this study

    Techniques Used: Plasmid Preparation, Expressing

    The PCR primers used in this study to amplify a full-length or partial targeted gene and to clone each gene to vector pET28a, with restriction enzyme site underlined
    Figure Legend Snippet: The PCR primers used in this study to amplify a full-length or partial targeted gene and to clone each gene to vector pET28a, with restriction enzyme site underlined

    Techniques Used: Plasmid Preparation, Sequencing

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    ATCC non o157 stec strains
    Comparison of ATCC MP-9 panel genomes BRIG comparison of six sequenced strains, along with Escherichia coli strains <t>O157:H7</t> EC4115 and strain K-12 substrain MG1665, referenced to the 5,840,137 bp chromosome of BAA-2196 (O26:H11). CDS are presented on the +/−strands as blue arrows and functional annotations for virulence genes and other loci of interest are highlighted as shown in the legend. Query genomes are color-coded, and the order plotted in the circle reflects the inferred phylogenomic relationships.
    Non O157 Stec Strains, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/non o157 stec strains/product/ATCC
    Average 86 stars, based on 1 article reviews
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    non o157 stec strains - by Bioz Stars, 2024-05
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    86
    ATCC o157 stec strain atcc 43888
    Comparison of ATCC MP-9 panel genomes BRIG comparison of six sequenced strains, along with Escherichia coli strains <t>O157:H7</t> EC4115 and strain K-12 substrain MG1665, referenced to the 5,840,137 bp chromosome of BAA-2196 (O26:H11). CDS are presented on the +/−strands as blue arrows and functional annotations for virulence genes and other loci of interest are highlighted as shown in the legend. Query genomes are color-coded, and the order plotted in the circle reflects the inferred phylogenomic relationships.
    O157 Stec Strain Atcc 43888, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/o157 stec strain atcc 43888/product/ATCC
    Average 86 stars, based on 1 article reviews
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    86
    ATCC 103 stec strain
    Comparison of ATCC MP-9 panel genomes BRIG comparison of six sequenced strains, along with Escherichia coli strains <t>O157:H7</t> EC4115 and strain K-12 substrain MG1665, referenced to the 5,840,137 bp chromosome of BAA-2196 (O26:H11). CDS are presented on the +/−strands as blue arrows and functional annotations for virulence genes and other loci of interest are highlighted as shown in the legend. Query genomes are color-coded, and the order plotted in the circle reflects the inferred phylogenomic relationships.
    103 Stec Strain, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/103 stec strain/product/ATCC
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    103 stec strain - by Bioz Stars, 2024-05
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    86
    ATCC non stec host strains
    Comparison of ATCC MP-9 panel genomes BRIG comparison of six sequenced strains, along with Escherichia coli strains <t>O157:H7</t> EC4115 and strain K-12 substrain MG1665, referenced to the 5,840,137 bp chromosome of BAA-2196 (O26:H11). CDS are presented on the +/−strands as blue arrows and functional annotations for virulence genes and other loci of interest are highlighted as shown in the legend. Query genomes are color-coded, and the order plotted in the circle reflects the inferred phylogenomic relationships.
    Non Stec Host Strains, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/non stec host strains/product/ATCC
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    ATCC escherichia coli stec strains
    Comparison of ATCC MP-9 panel genomes BRIG comparison of six sequenced strains, along with Escherichia coli strains <t>O157:H7</t> EC4115 and strain K-12 substrain MG1665, referenced to the 5,840,137 bp chromosome of BAA-2196 (O26:H11). CDS are presented on the +/−strands as blue arrows and functional annotations for virulence genes and other loci of interest are highlighted as shown in the legend. Query genomes are color-coded, and the order plotted in the circle reflects the inferred phylogenomic relationships.
    Escherichia Coli Stec Strains, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/escherichia coli stec strains/product/ATCC
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    ATCC stec o103 stx1a strain
    Comparison of ATCC MP-9 panel genomes BRIG comparison of six sequenced strains, along with Escherichia coli strains <t>O157:H7</t> EC4115 and strain K-12 substrain MG1665, referenced to the 5,840,137 bp chromosome of BAA-2196 (O26:H11). CDS are presented on the +/−strands as blue arrows and functional annotations for virulence genes and other loci of interest are highlighted as shown in the legend. Query genomes are color-coded, and the order plotted in the circle reflects the inferred phylogenomic relationships.
    Stec O103 Stx1a Strain, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/stec o103 stx1a strain/product/ATCC
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    ATCC serotype stec strain panel
    Comparison of ATCC MP-9 panel genomes BRIG comparison of six sequenced strains, along with Escherichia coli strains <t>O157:H7</t> EC4115 and strain K-12 substrain MG1665, referenced to the 5,840,137 bp chromosome of BAA-2196 (O26:H11). CDS are presented on the +/−strands as blue arrows and functional annotations for virulence genes and other loci of interest are highlighted as shown in the legend. Query genomes are color-coded, and the order plotted in the circle reflects the inferred phylogenomic relationships.
    Serotype Stec Strain Panel, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/serotype stec strain panel/product/ATCC
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    Comparison of ATCC MP-9 panel genomes BRIG comparison of six sequenced strains, along with Escherichia coli strains O157:H7 EC4115 and strain K-12 substrain MG1665, referenced to the 5,840,137 bp chromosome of BAA-2196 (O26:H11). CDS are presented on the +/−strands as blue arrows and functional annotations for virulence genes and other loci of interest are highlighted as shown in the legend. Query genomes are color-coded, and the order plotted in the circle reflects the inferred phylogenomic relationships.

    Journal: Frontiers in Microbiology

    Article Title: Pathogenomes and virulence profiles of representative big six non-O157 serogroup Shiga toxin-producing Escherichia coli

    doi: 10.3389/fmicb.2024.1364026

    Figure Lengend Snippet: Comparison of ATCC MP-9 panel genomes BRIG comparison of six sequenced strains, along with Escherichia coli strains O157:H7 EC4115 and strain K-12 substrain MG1665, referenced to the 5,840,137 bp chromosome of BAA-2196 (O26:H11). CDS are presented on the +/−strands as blue arrows and functional annotations for virulence genes and other loci of interest are highlighted as shown in the legend. Query genomes are color-coded, and the order plotted in the circle reflects the inferred phylogenomic relationships.

    Article Snippet: Panel MP-9, a representative collection of clinical emerging non-O157 STEC strains, colloquially referred to as the “Big Six,” was obtained from the American Type Culture Collection (ATCC).

    Techniques: Comparison, Functional Assay

    Phylogenomic position of ATCC-MP9 strains The relatedness of panel strains, including O157:H7 strain EC4115, was determined using MLST in Ridom SeqSphere+: (A) targeted seven-gene MLST accessed in EnteroBase. Numbers on connecting branches indicate the number of genes with differing allele status, and (B) cgMLST-based phylogeny using the closed chromosome of E. coli strain K12 subst. MG1655 as seed. The shared gene inventory was determined at 4,304 genes, according to the inclusion/exclusion criteria of the SeqSphere+ Target Definer and is comprised of 3,148 core and 908 accessory loci. Colors denote ST-classifications established in (A) .

    Journal: Frontiers in Microbiology

    Article Title: Pathogenomes and virulence profiles of representative big six non-O157 serogroup Shiga toxin-producing Escherichia coli

    doi: 10.3389/fmicb.2024.1364026

    Figure Lengend Snippet: Phylogenomic position of ATCC-MP9 strains The relatedness of panel strains, including O157:H7 strain EC4115, was determined using MLST in Ridom SeqSphere+: (A) targeted seven-gene MLST accessed in EnteroBase. Numbers on connecting branches indicate the number of genes with differing allele status, and (B) cgMLST-based phylogeny using the closed chromosome of E. coli strain K12 subst. MG1655 as seed. The shared gene inventory was determined at 4,304 genes, according to the inclusion/exclusion criteria of the SeqSphere+ Target Definer and is comprised of 3,148 core and 908 accessory loci. Colors denote ST-classifications established in (A) .

    Article Snippet: Panel MP-9, a representative collection of clinical emerging non-O157 STEC strains, colloquially referred to as the “Big Six,” was obtained from the American Type Culture Collection (ATCC).

    Techniques: