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campylobacter sputorum biovar sputorum  (ATCC)


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    ATCC campylobacter sputorum biovar sputorum
    Campylobacter Sputorum Biovar Sputorum, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Average 93 stars, based on 1 article reviews
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    A maximum likelihood consensus phylogenetic tree of Burkholderia -related endobacteria (BRE) showing the placement of <t>Pandoraea</t> <t>sputorum</t> EFB03792 and Mycetohabitans endofungorum EFB03829. The Candidatus Glomeribacter gigasporarum was used as outgroup. All nodes with maximum likelihood bootstrap values (MLBV) and Bayesian inference posterior probabilities (BIPP) >80% and >0.90 are successively labelled and separated by a slash “/.” Sequences obtained herein are marked with a red star “*.” GenBank accession numbers are shown after the species name. Background colours indicate groups [blue, BRE (A–C) ; red, Mycetohabitans spp.; yellow, Paraburkholderia spp.; brown, Pandoraea spp.; green, Candidatus Glomeribacter gigasporarum]. The lower left bar represents 0.01 expected substitutions per site.
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    strain vpi s  (ATCC)
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    A maximum likelihood consensus phylogenetic tree of Burkholderia -related endobacteria (BRE) showing the placement of <t>Pandoraea</t> <t>sputorum</t> EFB03792 and Mycetohabitans endofungorum EFB03829. The Candidatus Glomeribacter gigasporarum was used as outgroup. All nodes with maximum likelihood bootstrap values (MLBV) and Bayesian inference posterior probabilities (BIPP) >80% and >0.90 are successively labelled and separated by a slash “/.” Sequences obtained herein are marked with a red star “*.” GenBank accession numbers are shown after the species name. Background colours indicate groups [blue, BRE (A–C) ; red, Mycetohabitans spp.; yellow, Paraburkholderia spp.; brown, Pandoraea spp.; green, Candidatus Glomeribacter gigasporarum]. The lower left bar represents 0.01 expected substitutions per site.
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    A maximum likelihood consensus phylogenetic tree of Burkholderia -related endobacteria (BRE) showing the placement of Pandoraea sputorum EFB03792 and Mycetohabitans endofungorum EFB03829. The Candidatus Glomeribacter gigasporarum was used as outgroup. All nodes with maximum likelihood bootstrap values (MLBV) and Bayesian inference posterior probabilities (BIPP) >80% and >0.90 are successively labelled and separated by a slash “/.” Sequences obtained herein are marked with a red star “*.” GenBank accession numbers are shown after the species name. Background colours indicate groups [blue, BRE (A–C) ; red, Mycetohabitans spp.; yellow, Paraburkholderia spp.; brown, Pandoraea spp.; green, Candidatus Glomeribacter gigasporarum]. The lower left bar represents 0.01 expected substitutions per site.

    Journal: Frontiers in Microbiology

    Article Title: Detecting and characterizing new endofungal bacteria in new hosts: Pandoraea sputorum and Mycetohabitans endofungorum in Rhizopus arrhizus

    doi: 10.3389/fmicb.2024.1346252

    Figure Lengend Snippet: A maximum likelihood consensus phylogenetic tree of Burkholderia -related endobacteria (BRE) showing the placement of Pandoraea sputorum EFB03792 and Mycetohabitans endofungorum EFB03829. The Candidatus Glomeribacter gigasporarum was used as outgroup. All nodes with maximum likelihood bootstrap values (MLBV) and Bayesian inference posterior probabilities (BIPP) >80% and >0.90 are successively labelled and separated by a slash “/.” Sequences obtained herein are marked with a red star “*.” GenBank accession numbers are shown after the species name. Background colours indicate groups [blue, BRE (A–C) ; red, Mycetohabitans spp.; yellow, Paraburkholderia spp.; brown, Pandoraea spp.; green, Candidatus Glomeribacter gigasporarum]. The lower left bar represents 0.01 expected substitutions per site.

    Article Snippet: A probe (5′-CTT CCG GTA CCG TCA TCC CCC CGA GG-3′) labeled with Invitrogen Cyanine3 (Cy3) dye was designed for fluorescence in situ hybridization (FISH), targeting the 16S rDNA sequences specific to Pandoraea sputorum .

    Techniques:

    Circular maps of the complete genomes of two EFB associated with Rhizopus arrhizus . (A) Pandoraea sputorum EFB03792; (B) Mycetohabitans endofungorum EFB03829.

    Journal: Frontiers in Microbiology

    Article Title: Detecting and characterizing new endofungal bacteria in new hosts: Pandoraea sputorum and Mycetohabitans endofungorum in Rhizopus arrhizus

    doi: 10.3389/fmicb.2024.1346252

    Figure Lengend Snippet: Circular maps of the complete genomes of two EFB associated with Rhizopus arrhizus . (A) Pandoraea sputorum EFB03792; (B) Mycetohabitans endofungorum EFB03829.

    Article Snippet: A probe (5′-CTT CCG GTA CCG TCA TCC CCC CGA GG-3′) labeled with Invitrogen Cyanine3 (Cy3) dye was designed for fluorescence in situ hybridization (FISH), targeting the 16S rDNA sequences specific to Pandoraea sputorum .

    Techniques:

    Genomic features of Pandoraea sputorum and Mycetohabitans endofungorum sequenced and de novo assembled in this study.

    Journal: Frontiers in Microbiology

    Article Title: Detecting and characterizing new endofungal bacteria in new hosts: Pandoraea sputorum and Mycetohabitans endofungorum in Rhizopus arrhizus

    doi: 10.3389/fmicb.2024.1346252

    Figure Lengend Snippet: Genomic features of Pandoraea sputorum and Mycetohabitans endofungorum sequenced and de novo assembled in this study.

    Article Snippet: A probe (5′-CTT CCG GTA CCG TCA TCC CCC CGA GG-3′) labeled with Invitrogen Cyanine3 (Cy3) dye was designed for fluorescence in situ hybridization (FISH), targeting the 16S rDNA sequences specific to Pandoraea sputorum .

    Techniques: Plasmid Preparation

    Venn diagram of different genes based on CARD (A,B) and VFDB (C,D) annotation. (A,C) Pandoraea sputorum strains EFB03792, NCTC13161, and DSM21091; (B,D) Mycetohabitans endofungorum strains EFB03892 and HKI456.

    Journal: Frontiers in Microbiology

    Article Title: Detecting and characterizing new endofungal bacteria in new hosts: Pandoraea sputorum and Mycetohabitans endofungorum in Rhizopus arrhizus

    doi: 10.3389/fmicb.2024.1346252

    Figure Lengend Snippet: Venn diagram of different genes based on CARD (A,B) and VFDB (C,D) annotation. (A,C) Pandoraea sputorum strains EFB03792, NCTC13161, and DSM21091; (B,D) Mycetohabitans endofungorum strains EFB03892 and HKI456.

    Article Snippet: A probe (5′-CTT CCG GTA CCG TCA TCC CCC CGA GG-3′) labeled with Invitrogen Cyanine3 (Cy3) dye was designed for fluorescence in situ hybridization (FISH), targeting the 16S rDNA sequences specific to Pandoraea sputorum .

    Techniques:

    Collinearity analyses of EFB genomes. (A) Pandoraea sputorum ; (B) Mycetohabitans endofungorum .

    Journal: Frontiers in Microbiology

    Article Title: Detecting and characterizing new endofungal bacteria in new hosts: Pandoraea sputorum and Mycetohabitans endofungorum in Rhizopus arrhizus

    doi: 10.3389/fmicb.2024.1346252

    Figure Lengend Snippet: Collinearity analyses of EFB genomes. (A) Pandoraea sputorum ; (B) Mycetohabitans endofungorum .

    Article Snippet: A probe (5′-CTT CCG GTA CCG TCA TCC CCC CGA GG-3′) labeled with Invitrogen Cyanine3 (Cy3) dye was designed for fluorescence in situ hybridization (FISH), targeting the 16S rDNA sequences specific to Pandoraea sputorum .

    Techniques:

    Numbers of mobile genetic elements in Pandoraea sputorum and Mycetohabitans endofungorum .

    Journal: Frontiers in Microbiology

    Article Title: Detecting and characterizing new endofungal bacteria in new hosts: Pandoraea sputorum and Mycetohabitans endofungorum in Rhizopus arrhizus

    doi: 10.3389/fmicb.2024.1346252

    Figure Lengend Snippet: Numbers of mobile genetic elements in Pandoraea sputorum and Mycetohabitans endofungorum .

    Article Snippet: A probe (5′-CTT CCG GTA CCG TCA TCC CCC CGA GG-3′) labeled with Invitrogen Cyanine3 (Cy3) dye was designed for fluorescence in situ hybridization (FISH), targeting the 16S rDNA sequences specific to Pandoraea sputorum .

    Techniques: Plasmid Preparation, Sequencing

    The genes number of CAZymes form Mycetohabitans endofungorum (EFB03829 and HKI456) and Pandoraea sputorum (EFB03792, DSM21091, and NCTC13161).

    Journal: Frontiers in Microbiology

    Article Title: Detecting and characterizing new endofungal bacteria in new hosts: Pandoraea sputorum and Mycetohabitans endofungorum in Rhizopus arrhizus

    doi: 10.3389/fmicb.2024.1346252

    Figure Lengend Snippet: The genes number of CAZymes form Mycetohabitans endofungorum (EFB03829 and HKI456) and Pandoraea sputorum (EFB03792, DSM21091, and NCTC13161).

    Article Snippet: A probe (5′-CTT CCG GTA CCG TCA TCC CCC CGA GG-3′) labeled with Invitrogen Cyanine3 (Cy3) dye was designed for fluorescence in situ hybridization (FISH), targeting the 16S rDNA sequences specific to Pandoraea sputorum .

    Techniques: