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ncbi software development toolkit  (Biotechnology Information)

 
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    Structured Review

    Biotechnology Information ncbi software development toolkit
    Ncbi Software Development Toolkit, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/software+development/biotechnology+information+ncbi+software/pm42269612-923-5-3
    Average 86 stars, based on 1 article reviews
    ncbi software development toolkit - by Bioz Stars, 2026-11
    86/100 stars

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    Related Articles

    Software:

    Article Title: Genomic and physiological changes in a sexually selected and frugivorous bird radiation.
    Article Snippet: .. National Center for Biotechnology Information NCBI Software Development Toolkit. ..

    Article Title: Variants in angiogenesis-related genes and the risk of clear cell renal cell carcinoma.
    Article Snippet: .. Functional results of VEGFA rs2010963 via luciferase reporter gene assays Based on the bioinformatics analysis from the dbSNP website in National Center of Biotechnology Information (http://www.ncbi.nlm.nih.gov/pubmed) and the software of TFSEARCH (http://www.cbrc.jp/research/db/TFSEARCH. html), VEGFA rs2010963 is involved in a predicted binding site for the transcription factor StuAp. ..

    Functional Assay:

    Article Title: Variants in angiogenesis-related genes and the risk of clear cell renal cell carcinoma.
    Article Snippet: .. Functional results of VEGFA rs2010963 via luciferase reporter gene assays Based on the bioinformatics analysis from the dbSNP website in National Center of Biotechnology Information (http://www.ncbi.nlm.nih.gov/pubmed) and the software of TFSEARCH (http://www.cbrc.jp/research/db/TFSEARCH. html), VEGFA rs2010963 is involved in a predicted binding site for the transcription factor StuAp. ..

    Luciferase:

    Article Title: Variants in angiogenesis-related genes and the risk of clear cell renal cell carcinoma.
    Article Snippet: .. Functional results of VEGFA rs2010963 via luciferase reporter gene assays Based on the bioinformatics analysis from the dbSNP website in National Center of Biotechnology Information (http://www.ncbi.nlm.nih.gov/pubmed) and the software of TFSEARCH (http://www.cbrc.jp/research/db/TFSEARCH. html), VEGFA rs2010963 is involved in a predicted binding site for the transcription factor StuAp. ..

    Binding Assay:

    Article Title: Variants in angiogenesis-related genes and the risk of clear cell renal cell carcinoma.
    Article Snippet: .. Functional results of VEGFA rs2010963 via luciferase reporter gene assays Based on the bioinformatics analysis from the dbSNP website in National Center of Biotechnology Information (http://www.ncbi.nlm.nih.gov/pubmed) and the software of TFSEARCH (http://www.cbrc.jp/research/db/TFSEARCH. html), VEGFA rs2010963 is involved in a predicted binding site for the transcription factor StuAp. ..



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    Image Search Results


    MALDI mass spectrometry imaging of the three experimental groups. ( A ) Glutathione (GSH) at m / z 306.0768 [M-H] − , obtained by met-ID and confirmed from MSMS-fragmentation ( p = 0.032); ( B ) glutathione (GSSG) at m / z 611.1440 [M-H] − , identified based on accurate mass ( p = 0.2443); ( C ) cholesterol sulphate at m / z 465.3049 [M-H] − ( p = 0.050); and ( D ) sphingomyelin (33:1) at m / z 687.5452 [M-H] − ( p = 0.009), obtained by met-ID, respectively. Coloration of the respective group regions is given at the bottom of the figure. AS: angII + semaglutide; AV: angII + vehicle; SV: saline + vehicle. Box-plots and p -values were obtained from one-way ANOVA of the three groups.

    Journal: Biomedicines

    Article Title: Semaglutide Prevents Aortic Rupture and Dissection in the Angiotensin II Mouse Model

    doi: 10.3390/biomedicines14040933

    Figure Lengend Snippet: MALDI mass spectrometry imaging of the three experimental groups. ( A ) Glutathione (GSH) at m / z 306.0768 [M-H] − , obtained by met-ID and confirmed from MSMS-fragmentation ( p = 0.032); ( B ) glutathione (GSSG) at m / z 611.1440 [M-H] − , identified based on accurate mass ( p = 0.2443); ( C ) cholesterol sulphate at m / z 465.3049 [M-H] − ( p = 0.050); and ( D ) sphingomyelin (33:1) at m / z 687.5452 [M-H] − ( p = 0.009), obtained by met-ID, respectively. Coloration of the respective group regions is given at the bottom of the figure. AS: angII + semaglutide; AV: angII + vehicle; SV: saline + vehicle. Box-plots and p -values were obtained from one-way ANOVA of the three groups.

    Article Snippet: Peak m / z recalibration and preliminary metabolite identification were performed by using accurate mass measurements and the in-house developed software Met-ID (version 0.5.8) [ ] which includes searchable metabolites entries from the Human Metabolome Database (HMDB) [ ] and LIPID MAPS [ , ].

    Techniques: Mass Spectrometry, Imaging, Saline

    MALDI mass spectrometry imaging and box-plot of m / z 734.5348 (corresponding to the m / z of galactosylceramide (d18:1/16:0) [M+Cl]), obtained by met-ID, of the angII + semaglutide (orange) vs. the agII + vehicle (red) groups. The very low intensities in the saline + vehicle group (green) are also included in the figure for comparison.

    Journal: Biomedicines

    Article Title: Semaglutide Prevents Aortic Rupture and Dissection in the Angiotensin II Mouse Model

    doi: 10.3390/biomedicines14040933

    Figure Lengend Snippet: MALDI mass spectrometry imaging and box-plot of m / z 734.5348 (corresponding to the m / z of galactosylceramide (d18:1/16:0) [M+Cl]), obtained by met-ID, of the angII + semaglutide (orange) vs. the agII + vehicle (red) groups. The very low intensities in the saline + vehicle group (green) are also included in the figure for comparison.

    Article Snippet: Peak m / z recalibration and preliminary metabolite identification were performed by using accurate mass measurements and the in-house developed software Met-ID (version 0.5.8) [ ] which includes searchable metabolites entries from the Human Metabolome Database (HMDB) [ ] and LIPID MAPS [ , ].

    Techniques: Mass Spectrometry, Imaging, Saline, Comparison