s salivarius  (ATCC)


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    ATCC s salivarius
    Diameter of growth inhibition zones and the inhibitory effect of different concentrations on different microorganisms
    S Salivarius, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Antimicrobial Activity of Silver Nanoparticles Synthesized by the Green Method Using Rhus coriaria L . Extract Against Oral Pathogenic Microorganisms"

    Article Title: Antimicrobial Activity of Silver Nanoparticles Synthesized by the Green Method Using Rhus coriaria L . Extract Against Oral Pathogenic Microorganisms

    Journal: Medical Journal of the Islamic Republic of Iran

    doi: 10.47176/mjiri.36.154

    Diameter of growth inhibition zones and the inhibitory effect of different concentrations on different microorganisms
    Figure Legend Snippet: Diameter of growth inhibition zones and the inhibitory effect of different concentrations on different microorganisms

    Techniques Used: Inhibition

    Descriptive statistics regarding the diameter of growth inhibition zones caused by AgNPs synthesized by the green method, R. coriaria extract alone, and chemically synthesized AgNPs based on the concentration, type of microorganisms, and diameter of growth inhibition zone
    Figure Legend Snippet: Descriptive statistics regarding the diameter of growth inhibition zones caused by AgNPs synthesized by the green method, R. coriaria extract alone, and chemically synthesized AgNPs based on the concentration, type of microorganisms, and diameter of growth inhibition zone

    Techniques Used: Inhibition, Synthesized, Concentration Assay

    Comparison of the diameter of growth inhibition zones of different bacteria caused by R. coriaria extract in different concentrations
    Figure Legend Snippet: Comparison of the diameter of growth inhibition zones of different bacteria caused by R. coriaria extract in different concentrations

    Techniques Used: Inhibition

    Diameter of growth inhibition zones (mm) of different bacteria in different concentrations
    Figure Legend Snippet: Diameter of growth inhibition zones (mm) of different bacteria in different concentrations

    Techniques Used: Inhibition

    Comparison of the diameter of growth inhibition zones of bacteria caused by R. coriaria extract and R. coriaria nanoparticles in different concentrations
    Figure Legend Snippet: Comparison of the diameter of growth inhibition zones of bacteria caused by R. coriaria extract and R. coriaria nanoparticles in different concentrations

    Techniques Used: Inhibition

    MIC and MBC of the materials against the tested bacteria
    Figure Legend Snippet: MIC and MBC of the materials against the tested bacteria

    Techniques Used:

    s thermophilus counterpart  (ATCC)


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    ATCC s thermophilus counterpart
    S Thermophilus Counterpart, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    s salivarius  (ATCC)


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    ATCC s salivarius
    Diameter of growth inhibition zones and the inhibitory effect of different concentrations on different microorganisms
    S Salivarius, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Antimicrobial Activity of Silver Nanoparticles Synthesized by the Green Method Using Rhus coriaria L . Extract Against Oral Pathogenic Microorganisms"

    Article Title: Antimicrobial Activity of Silver Nanoparticles Synthesized by the Green Method Using Rhus coriaria L . Extract Against Oral Pathogenic Microorganisms

    Journal: Medical Journal of the Islamic Republic of Iran

    doi: 10.47176/mjiri.36.154

    Diameter of growth inhibition zones and the inhibitory effect of different concentrations on different microorganisms
    Figure Legend Snippet: Diameter of growth inhibition zones and the inhibitory effect of different concentrations on different microorganisms

    Techniques Used: Inhibition

    Descriptive statistics regarding the diameter of growth inhibition zones caused by AgNPs synthesized by the green method, R. coriaria extract alone, and chemically synthesized AgNPs based on the concentration, type of microorganisms, and diameter of growth inhibition zone
    Figure Legend Snippet: Descriptive statistics regarding the diameter of growth inhibition zones caused by AgNPs synthesized by the green method, R. coriaria extract alone, and chemically synthesized AgNPs based on the concentration, type of microorganisms, and diameter of growth inhibition zone

    Techniques Used: Inhibition, Synthesized, Concentration Assay

    Comparison of the diameter of growth inhibition zones of different bacteria caused by R. coriaria extract in different concentrations
    Figure Legend Snippet: Comparison of the diameter of growth inhibition zones of different bacteria caused by R. coriaria extract in different concentrations

    Techniques Used: Inhibition

    Diameter of growth inhibition zones (mm) of different bacteria in different concentrations
    Figure Legend Snippet: Diameter of growth inhibition zones (mm) of different bacteria in different concentrations

    Techniques Used: Inhibition

    Comparison of the diameter of growth inhibition zones of bacteria caused by R. coriaria extract and R. coriaria nanoparticles in different concentrations
    Figure Legend Snippet: Comparison of the diameter of growth inhibition zones of bacteria caused by R. coriaria extract and R. coriaria nanoparticles in different concentrations

    Techniques Used: Inhibition

    MIC and MBC of the materials against the tested bacteria
    Figure Legend Snippet: MIC and MBC of the materials against the tested bacteria

    Techniques Used:

    s thermophilus lmg 18311  (ATCC)


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    ATCC s thermophilus lmg 18311
    S Thermophilus Lmg 18311, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    s thermophilus st1  (ATCC)


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    ATCC s thermophilus st1
    (a) Chemical structure of the secondary cell wall polymer of Paenibacillus alvei showing the diphosphodiester linkage to the bacterial peptidoglycan. (b) Representation of a selected region of the EPS from Streptococcus <t>thermophilus</t> , showing the residues that are connected to the 3,9-dideoxy- d - threo - d -altro-nononic acid moiety. , (c) Representation of the open-chain d -GalNAc residue linked to a d -Galp residue via an acetal linkage, as present in the core oligosaccharides of Proteus penneri and Shewanella oneidensis . , (d) Chemical structure of the WTA of Bacillus subtilis . (e) Selected region of the O-antigen polysaccharide of Proteus mirabilis O38 showing the N -acetyl-phosphoethanolamine and N -acetyl- l -aspartic acid substituents.
    S Thermophilus St1, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Primary Structure of Glycans by NMR Spectroscopy"

    Article Title: Primary Structure of Glycans by NMR Spectroscopy

    Journal: Chemical Reviews

    doi: 10.1021/acs.chemrev.2c00580

    (a) Chemical structure of the secondary cell wall polymer of Paenibacillus alvei showing the diphosphodiester linkage to the bacterial peptidoglycan. (b) Representation of a selected region of the EPS from Streptococcus thermophilus , showing the residues that are connected to the 3,9-dideoxy- d - threo - d -altro-nononic acid moiety. , (c) Representation of the open-chain d -GalNAc residue linked to a d -Galp residue via an acetal linkage, as present in the core oligosaccharides of Proteus penneri and Shewanella oneidensis . , (d) Chemical structure of the WTA of Bacillus subtilis . (e) Selected region of the O-antigen polysaccharide of Proteus mirabilis O38 showing the N -acetyl-phosphoethanolamine and N -acetyl- l -aspartic acid substituents.
    Figure Legend Snippet: (a) Chemical structure of the secondary cell wall polymer of Paenibacillus alvei showing the diphosphodiester linkage to the bacterial peptidoglycan. (b) Representation of a selected region of the EPS from Streptococcus thermophilus , showing the residues that are connected to the 3,9-dideoxy- d - threo - d -altro-nononic acid moiety. , (c) Representation of the open-chain d -GalNAc residue linked to a d -Galp residue via an acetal linkage, as present in the core oligosaccharides of Proteus penneri and Shewanella oneidensis . , (d) Chemical structure of the WTA of Bacillus subtilis . (e) Selected region of the O-antigen polysaccharide of Proteus mirabilis O38 showing the N -acetyl-phosphoethanolamine and N -acetyl- l -aspartic acid substituents.

    Techniques Used:

    Component analysis of the ST1 exopolysaccharide (EPS) from Streptococcus thermophilus by derivatization with chiral ( S )-(+)-2-methylbutyryl (SMB) groups. 1 H NMR spectra of the EPS-SMB hydrolysate (bottom), d -galactose-SMB (middle), and d -glucose-SMB (upper). Adapted and reproduced with permission from ref . Copyright 2010 Springer.
    Figure Legend Snippet: Component analysis of the ST1 exopolysaccharide (EPS) from Streptococcus thermophilus by derivatization with chiral ( S )-(+)-2-methylbutyryl (SMB) groups. 1 H NMR spectra of the EPS-SMB hydrolysate (bottom), d -galactose-SMB (middle), and d -glucose-SMB (upper). Adapted and reproduced with permission from ref . Copyright 2010 Springer.

    Techniques Used:

    Spectra from a PANSY NMR experiment utilizing dual receivers. The 1 H, 1 H-TOCSY spectrum, resulting from a 120 ms isotropic mixing time in the experiment, shows correlations from the six anomeric protons of the repeating unit in the ST1 EPS from Streptococcus thermophilus (top). During the spin-lock time, a separate one-dimensional 13 C experiment with proton decoupling was acquired (bottom). Reproduced with permission from ref . Copyright 2010 Springer Publisher.
    Figure Legend Snippet: Spectra from a PANSY NMR experiment utilizing dual receivers. The 1 H, 1 H-TOCSY spectrum, resulting from a 120 ms isotropic mixing time in the experiment, shows correlations from the six anomeric protons of the repeating unit in the ST1 EPS from Streptococcus thermophilus (top). During the spin-lock time, a separate one-dimensional 13 C experiment with proton decoupling was acquired (bottom). Reproduced with permission from ref . Copyright 2010 Springer Publisher.

    Techniques Used:

    s thermophilus  (ATCC)


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    ATCC s thermophilus
    S Thermophilus, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    i e s thermophilus cnrz1066  (ATCC)


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    ATCC i e s thermophilus cnrz1066
    Genomic features of a selected number of lactic acid bacteria related to human lifestyle and health.
    I E S Thermophilus Cnrz1066, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Functional genomics of lactic acid bacteria: from food to health"

    Article Title: Functional genomics of lactic acid bacteria: from food to health

    Journal: Microbial Cell Factories

    doi: 10.1186/1475-2859-13-S1-S8

    Genomic features of a selected number of lactic acid bacteria related to human lifestyle and health.
    Figure Legend Snippet: Genomic features of a selected number of lactic acid bacteria related to human lifestyle and health.

    Techniques Used: Isolation

    s thermophilus  (ATCC)


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    ATCC s thermophilus
    The suppressive effect of S. <t>thermophilus</t> ST28 on Th17 cells in murine splenocytes. Splenocytes were stimulated with TGF- β plus IL-6 in the absence (−) or presence of ST28 and applied to flow cytometry. The number of CD4 + , CD11b + , and CD11c + cells in 5,000 IL-17 + cells is indicated. Splenocytes without the stimulation of TGF- β plus IL-6 were used as controls (Cont). ## P < 0.01 ( S. thermophilus ST28 versus S. thermophilus ATCC 19258). ** P < 0.01 ((−) versus Cont, S. thermophilus ST28, or S. thermophilus ATCC 19258). ND, not detected.
    S Thermophilus, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Streptococcus thermophilus ST28 Ameliorates Colitis in Mice Partially by Suppression of Inflammatory Th17 Cells"

    Article Title: Streptococcus thermophilus ST28 Ameliorates Colitis in Mice Partially by Suppression of Inflammatory Th17 Cells

    Journal: Journal of Biomedicine and Biotechnology

    doi: 10.1155/2011/378417

    The suppressive effect of S. thermophilus ST28 on Th17 cells in murine splenocytes. Splenocytes were stimulated with TGF- β plus IL-6 in the absence (−) or presence of ST28 and applied to flow cytometry. The number of CD4 + , CD11b + , and CD11c + cells in 5,000 IL-17 + cells is indicated. Splenocytes without the stimulation of TGF- β plus IL-6 were used as controls (Cont). ## P < 0.01 ( S. thermophilus ST28 versus S. thermophilus ATCC 19258). ** P < 0.01 ((−) versus Cont, S. thermophilus ST28, or S. thermophilus ATCC 19258). ND, not detected.
    Figure Legend Snippet: The suppressive effect of S. thermophilus ST28 on Th17 cells in murine splenocytes. Splenocytes were stimulated with TGF- β plus IL-6 in the absence (−) or presence of ST28 and applied to flow cytometry. The number of CD4 + , CD11b + , and CD11c + cells in 5,000 IL-17 + cells is indicated. Splenocytes without the stimulation of TGF- β plus IL-6 were used as controls (Cont). ## P < 0.01 ( S. thermophilus ST28 versus S. thermophilus ATCC 19258). ** P < 0.01 ((−) versus Cont, S. thermophilus ST28, or S. thermophilus ATCC 19258). ND, not detected.

    Techniques Used: Flow Cytometry

    Changes in cytokine production patterns by murine splenocytes in Th17-skewed conditions by the addition of  S. thermophilus  ST28 or  S. thermophilus  ATCC 19258.
    Figure Legend Snippet: Changes in cytokine production patterns by murine splenocytes in Th17-skewed conditions by the addition of S. thermophilus ST28 or S. thermophilus ATCC 19258.

    Techniques Used:

    Effects of S. thermophilus ST28 administration on colons of dextran-sodium-sulphate- (DSS-) induced colitis mice. (a) Overview of the experimental design. Acute colitis was induced in mice ( n = 4 for each group) by exposure to 3.5% DSS for 5 days. On days 1–3, mice were orally administered ST28 cells or ATCC 19258 (10 7 cfu/day). (b) Inflammation score on Day 5. The severity of inflammation was assessed by assigning a score for consistency and bleeding of stool (full score, 6). (c) Colon length on Day 5. Cont, healthy control mice, (−) untreated DSS-induced colitis mice.
    Figure Legend Snippet: Effects of S. thermophilus ST28 administration on colons of dextran-sodium-sulphate- (DSS-) induced colitis mice. (a) Overview of the experimental design. Acute colitis was induced in mice ( n = 4 for each group) by exposure to 3.5% DSS for 5 days. On days 1–3, mice were orally administered ST28 cells or ATCC 19258 (10 7 cfu/day). (b) Inflammation score on Day 5. The severity of inflammation was assessed by assigning a score for consistency and bleeding of stool (full score, 6). (c) Colon length on Day 5. Cont, healthy control mice, (−) untreated DSS-induced colitis mice.

    Techniques Used:

    Effects of S. thermophilus ST28 administration on cytokine production in the lamina propria lymphocytes (LPLs) from DSS-induced colitis mice. LPLs from DSS-induced mice orally administered ST28 or ATCC 19258 were incubated with anti-CD3 and anti-CD28. Culture supernatants were harvested and assayed for concentrations of IL-17 (a) and IFN- γ (b). LPLs from untreated DSS-induced colitis mice (−) and healthy control mice (Cont) were also assayed. ND, not detected.
    Figure Legend Snippet: Effects of S. thermophilus ST28 administration on cytokine production in the lamina propria lymphocytes (LPLs) from DSS-induced colitis mice. LPLs from DSS-induced mice orally administered ST28 or ATCC 19258 were incubated with anti-CD3 and anti-CD28. Culture supernatants were harvested and assayed for concentrations of IL-17 (a) and IFN- γ (b). LPLs from untreated DSS-induced colitis mice (−) and healthy control mice (Cont) were also assayed. ND, not detected.

    Techniques Used: Incubation

    Effects of S. thermophilus ST28 on percentages of Th17 (a) and inflammatory DC (b) in LPLs from DSS-induced colitis mice. (a) After the experiments described in , LPLs from DSS-induced mice orally administered ST28 or ATCC 19258 were incubated with phorbol-12-myristate-13-acetate, ionomycin, and brefeldin A and applied to flow cytometry to measure intracellular IL-17. (b) Separately, flow cytometric analysis of surface marker CD86 was performed using freshly prepared LPLs. LPLs from untreated DSS-induced colitis mice (−) and healthy control mice (Cont) were also assayed. ND, not detected.
    Figure Legend Snippet: Effects of S. thermophilus ST28 on percentages of Th17 (a) and inflammatory DC (b) in LPLs from DSS-induced colitis mice. (a) After the experiments described in , LPLs from DSS-induced mice orally administered ST28 or ATCC 19258 were incubated with phorbol-12-myristate-13-acetate, ionomycin, and brefeldin A and applied to flow cytometry to measure intracellular IL-17. (b) Separately, flow cytometric analysis of surface marker CD86 was performed using freshly prepared LPLs. LPLs from untreated DSS-induced colitis mice (−) and healthy control mice (Cont) were also assayed. ND, not detected.

    Techniques Used: Incubation, Flow Cytometry, Marker

    Effects of S. thermophilus ST28 on the production of IL-6 (a) and IL-10 (b) and the percentage of CD86 + cells (c) in bone marrow dendritic cells (BMDC). LPS-matured BMDC were incubated in the absence (−) or presence of ST28 or ATCC 19258 and assayed for concentrations of IL-6 (a) and IL-10 (b). CD86 + cells were analyzed by flow cytometry (c). BMDCs without LPS activation were used as controls (Cont). ** P < 0.01, * P < 0.05 ((−) versus Cont, S. thermophilus ST28, or S. thermophilus ATCC 19258). ND, not detected.
    Figure Legend Snippet: Effects of S. thermophilus ST28 on the production of IL-6 (a) and IL-10 (b) and the percentage of CD86 + cells (c) in bone marrow dendritic cells (BMDC). LPS-matured BMDC were incubated in the absence (−) or presence of ST28 or ATCC 19258 and assayed for concentrations of IL-6 (a) and IL-10 (b). CD86 + cells were analyzed by flow cytometry (c). BMDCs without LPS activation were used as controls (Cont). ** P < 0.01, * P < 0.05 ((−) versus Cont, S. thermophilus ST28, or S. thermophilus ATCC 19258). ND, not detected.

    Techniques Used: Incubation, Flow Cytometry, Activation Assay

    s thermophilus dsm 20479  (ATCC)


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    ATCC s thermophilus dsm 20479
    Evaluation of various culture media and incubation conditions for enumerating pure cultures of bifidobacteria and lactic acid bacteria strains <xref ref-type= * ." width="250" height="auto" />
    S Thermophilus Dsm 20479, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Evaluation of culture media for selective enumeration of bifidobacteria and lactic acid bacteria"

    Article Title: Evaluation of culture media for selective enumeration of bifidobacteria and lactic acid bacteria

    Journal: Brazilian Journal of Microbiology

    doi:

    Evaluation of various culture media and incubation conditions for enumerating pure cultures of bifidobacteria and lactic acid bacteria strains <xref ref-type= * ." title="Evaluation of various culture media and incubation conditions for enumerating pure cultures of ... " property="contentUrl" width="100%" height="100%"/>
    Figure Legend Snippet: Evaluation of various culture media and incubation conditions for enumerating pure cultures of bifidobacteria and lactic acid bacteria strains * .

    Techniques Used: Incubation

    s thermophilus lmd9  (ATCC)


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    ATCC s thermophilus lmd9
    S Thermophilus Lmd9, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    s thermophilus  (ATCC)


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    ATCC s thermophilus
    Synteny plot of genomes Sii CJ18 (x) vs. Sii ATCC BAA-102 T (y). Both genomes of the Sii strains display a high degree of conservation indicated by the alignment near the diagonal line. Major insertion sites can be identified as R4 (34.2 kb) consisting largely of phage-related genes; R6 (25.6 kb) encompassing a 13.2-kb S. <t>thermophilus</t> -gene cluster comprising the additional gal-lac operon; and R9 (26.1 kb) containing among others an HTH-type transcriptional regulator Rgg, primosomal protein N’ (replication factor Y) – superfamily II helicase, an FtsK/SpoIIIE family protein and a conjugal transfer protein. The major gap α (34.6 kb) in ATCC BAA-102 T corresponds to a phage region.
    S Thermophilus, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Comparative genome analysis of Streptococcus infantarius subsp. infantarius CJ18, an African fermented camel milk isolate with adaptations to dairy environment"

    Article Title: Comparative genome analysis of Streptococcus infantarius subsp. infantarius CJ18, an African fermented camel milk isolate with adaptations to dairy environment

    Journal: BMC Genomics

    doi: 10.1186/1471-2164-14-200

    Synteny plot of genomes Sii CJ18 (x) vs. Sii ATCC BAA-102 T (y). Both genomes of the Sii strains display a high degree of conservation indicated by the alignment near the diagonal line. Major insertion sites can be identified as R4 (34.2 kb) consisting largely of phage-related genes; R6 (25.6 kb) encompassing a 13.2-kb S. thermophilus -gene cluster comprising the additional gal-lac operon; and R9 (26.1 kb) containing among others an HTH-type transcriptional regulator Rgg, primosomal protein N’ (replication factor Y) – superfamily II helicase, an FtsK/SpoIIIE family protein and a conjugal transfer protein. The major gap α (34.6 kb) in ATCC BAA-102 T corresponds to a phage region.
    Figure Legend Snippet: Synteny plot of genomes Sii CJ18 (x) vs. Sii ATCC BAA-102 T (y). Both genomes of the Sii strains display a high degree of conservation indicated by the alignment near the diagonal line. Major insertion sites can be identified as R4 (34.2 kb) consisting largely of phage-related genes; R6 (25.6 kb) encompassing a 13.2-kb S. thermophilus -gene cluster comprising the additional gal-lac operon; and R9 (26.1 kb) containing among others an HTH-type transcriptional regulator Rgg, primosomal protein N’ (replication factor Y) – superfamily II helicase, an FtsK/SpoIIIE family protein and a conjugal transfer protein. The major gap α (34.6 kb) in ATCC BAA-102 T corresponds to a phage region.

    Techniques Used:

    Barcode plot of whole genome comparison of Sii CJ18 with genomes of related species. Whole genomes of Streptococcus and Lactococcus strains were compared for the absence (black bar) and presence (white space) of certain genes related to those of CJ18. Several relevant regions (R1-15) were detected in CJ18 containing the following proteins: (R1) phage-related, (R2) cell-/environment signalling, (R3) Eps/Cps synthesis, (R4) phage-related, (R5) restriction endonuclease and methylase, (R6) S. thermophilus -related e.g. LacS/LacZ, (R7) metabolism, (R8) CRISPR-associated, (R9) hypothetical proteins unique for CJ18, (R10) S. infantarius -species-specific, (R11) surface antigen, (R12) putative bacteriocin locus inactive in CJ18, (R13) adhesion-related proteins, (R14) hypothetical proteins shared between S. infantarius and dairy S. gallolyticus subsp. macedonicus and (R15) 2 nd oligopeptide transport operon. Genome characteristic base-deviation index (BDI), GC-skew and GC-content of CJ18 are depicted below the comparison barcode chart. The strains used in this comparison are: 1.) Sii ATCC BAA-102 T , 2.) S. equinus ATCC 9812, 3.) S. gallolyticus subsp. gallolyticus ATCC BAA-2069, 4.) S. gallolyticus subsp. gallolyticus UCN34, 5.) S. bovis ATCC 700338, 6.) S. gallolyticus subsp. macedonicus ACA-DC 198, 7.) S. agalactiae 2603 V/R, 8.) S. agalactiae NEM316, 9.) S. equi subsp. equi 4047, 10.) S. dysgalactiae subsp. equisimilis GGS_124, 11.) S. pyogenes M1 GAS, 12.) S. equi subsp. zooepidemicus MGCS10565, 13.) S. thermophilus LMG18311, 14.) S. thermophilus LMD-9, 15.) S. thermophilus CNRZ1066, 16.) S. sanguinis SK36, 17.) S anginosus 1_2_62CV, 18.) S. mitis B6, 19.) S. pneumoniae D39, 20.) S. pneumoniae R6, 21.) Lc. lactis subsp. cremoris MG1363 and 22.) artificial antibiotic resistance genome .
    Figure Legend Snippet: Barcode plot of whole genome comparison of Sii CJ18 with genomes of related species. Whole genomes of Streptococcus and Lactococcus strains were compared for the absence (black bar) and presence (white space) of certain genes related to those of CJ18. Several relevant regions (R1-15) were detected in CJ18 containing the following proteins: (R1) phage-related, (R2) cell-/environment signalling, (R3) Eps/Cps synthesis, (R4) phage-related, (R5) restriction endonuclease and methylase, (R6) S. thermophilus -related e.g. LacS/LacZ, (R7) metabolism, (R8) CRISPR-associated, (R9) hypothetical proteins unique for CJ18, (R10) S. infantarius -species-specific, (R11) surface antigen, (R12) putative bacteriocin locus inactive in CJ18, (R13) adhesion-related proteins, (R14) hypothetical proteins shared between S. infantarius and dairy S. gallolyticus subsp. macedonicus and (R15) 2 nd oligopeptide transport operon. Genome characteristic base-deviation index (BDI), GC-skew and GC-content of CJ18 are depicted below the comparison barcode chart. The strains used in this comparison are: 1.) Sii ATCC BAA-102 T , 2.) S. equinus ATCC 9812, 3.) S. gallolyticus subsp. gallolyticus ATCC BAA-2069, 4.) S. gallolyticus subsp. gallolyticus UCN34, 5.) S. bovis ATCC 700338, 6.) S. gallolyticus subsp. macedonicus ACA-DC 198, 7.) S. agalactiae 2603 V/R, 8.) S. agalactiae NEM316, 9.) S. equi subsp. equi 4047, 10.) S. dysgalactiae subsp. equisimilis GGS_124, 11.) S. pyogenes M1 GAS, 12.) S. equi subsp. zooepidemicus MGCS10565, 13.) S. thermophilus LMG18311, 14.) S. thermophilus LMD-9, 15.) S. thermophilus CNRZ1066, 16.) S. sanguinis SK36, 17.) S anginosus 1_2_62CV, 18.) S. mitis B6, 19.) S. pneumoniae D39, 20.) S. pneumoniae R6, 21.) Lc. lactis subsp. cremoris MG1363 and 22.) artificial antibiotic resistance genome .

    Techniques Used: CRISPR

    GenBank accession numbers and reference sequence numbers of strains used in this study
    Figure Legend Snippet: GenBank accession numbers and reference sequence numbers of strains used in this study

    Techniques Used: Sequencing, Plasmid Preparation, Derivative Assay

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    (a) Chemical structure of the secondary cell wall polymer of Paenibacillus alvei showing the diphosphodiester linkage to the bacterial peptidoglycan. (b) Representation of a selected region of the EPS from Streptococcus <t>thermophilus</t> , showing the residues that are connected to the 3,9-dideoxy- d - threo - d -altro-nononic acid moiety. , (c) Representation of the open-chain d -GalNAc residue linked to a d -Galp residue via an acetal linkage, as present in the core oligosaccharides of Proteus penneri and Shewanella oneidensis . , (d) Chemical structure of the WTA of Bacillus subtilis . (e) Selected region of the O-antigen polysaccharide of Proteus mirabilis O38 showing the N -acetyl-phosphoethanolamine and N -acetyl- l -aspartic acid substituents.
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    Diameter of growth inhibition zones and the inhibitory effect of different concentrations on different microorganisms

    Journal: Medical Journal of the Islamic Republic of Iran

    Article Title: Antimicrobial Activity of Silver Nanoparticles Synthesized by the Green Method Using Rhus coriaria L . Extract Against Oral Pathogenic Microorganisms

    doi: 10.47176/mjiri.36.154

    Figure Lengend Snippet: Diameter of growth inhibition zones and the inhibitory effect of different concentrations on different microorganisms

    Article Snippet: This in vitro study evaluated the antimicrobial effects of R. coriaria on common cariogenic microorganisms, including 1683 S. mutans (ATCC 35668), 1601 S. sobrinus (ATTC 27607), S. salivarius (ATCC 19258), 1237 E. faecalis (NCTC 8213) and 1643 L. acidophilus (DSM 20079) approved by the National Center for Genetic and Biological Resources of Iran in lyophilized form.

    Techniques: Inhibition

    Descriptive statistics regarding the diameter of growth inhibition zones caused by AgNPs synthesized by the green method, R. coriaria extract alone, and chemically synthesized AgNPs based on the concentration, type of microorganisms, and diameter of growth inhibition zone

    Journal: Medical Journal of the Islamic Republic of Iran

    Article Title: Antimicrobial Activity of Silver Nanoparticles Synthesized by the Green Method Using Rhus coriaria L . Extract Against Oral Pathogenic Microorganisms

    doi: 10.47176/mjiri.36.154

    Figure Lengend Snippet: Descriptive statistics regarding the diameter of growth inhibition zones caused by AgNPs synthesized by the green method, R. coriaria extract alone, and chemically synthesized AgNPs based on the concentration, type of microorganisms, and diameter of growth inhibition zone

    Article Snippet: This in vitro study evaluated the antimicrobial effects of R. coriaria on common cariogenic microorganisms, including 1683 S. mutans (ATCC 35668), 1601 S. sobrinus (ATTC 27607), S. salivarius (ATCC 19258), 1237 E. faecalis (NCTC 8213) and 1643 L. acidophilus (DSM 20079) approved by the National Center for Genetic and Biological Resources of Iran in lyophilized form.

    Techniques: Inhibition, Synthesized, Concentration Assay

    Comparison of the diameter of growth inhibition zones of different bacteria caused by R. coriaria extract in different concentrations

    Journal: Medical Journal of the Islamic Republic of Iran

    Article Title: Antimicrobial Activity of Silver Nanoparticles Synthesized by the Green Method Using Rhus coriaria L . Extract Against Oral Pathogenic Microorganisms

    doi: 10.47176/mjiri.36.154

    Figure Lengend Snippet: Comparison of the diameter of growth inhibition zones of different bacteria caused by R. coriaria extract in different concentrations

    Article Snippet: This in vitro study evaluated the antimicrobial effects of R. coriaria on common cariogenic microorganisms, including 1683 S. mutans (ATCC 35668), 1601 S. sobrinus (ATTC 27607), S. salivarius (ATCC 19258), 1237 E. faecalis (NCTC 8213) and 1643 L. acidophilus (DSM 20079) approved by the National Center for Genetic and Biological Resources of Iran in lyophilized form.

    Techniques: Inhibition

    Diameter of growth inhibition zones (mm) of different bacteria in different concentrations

    Journal: Medical Journal of the Islamic Republic of Iran

    Article Title: Antimicrobial Activity of Silver Nanoparticles Synthesized by the Green Method Using Rhus coriaria L . Extract Against Oral Pathogenic Microorganisms

    doi: 10.47176/mjiri.36.154

    Figure Lengend Snippet: Diameter of growth inhibition zones (mm) of different bacteria in different concentrations

    Article Snippet: This in vitro study evaluated the antimicrobial effects of R. coriaria on common cariogenic microorganisms, including 1683 S. mutans (ATCC 35668), 1601 S. sobrinus (ATTC 27607), S. salivarius (ATCC 19258), 1237 E. faecalis (NCTC 8213) and 1643 L. acidophilus (DSM 20079) approved by the National Center for Genetic and Biological Resources of Iran in lyophilized form.

    Techniques: Inhibition

    Comparison of the diameter of growth inhibition zones of bacteria caused by R. coriaria extract and R. coriaria nanoparticles in different concentrations

    Journal: Medical Journal of the Islamic Republic of Iran

    Article Title: Antimicrobial Activity of Silver Nanoparticles Synthesized by the Green Method Using Rhus coriaria L . Extract Against Oral Pathogenic Microorganisms

    doi: 10.47176/mjiri.36.154

    Figure Lengend Snippet: Comparison of the diameter of growth inhibition zones of bacteria caused by R. coriaria extract and R. coriaria nanoparticles in different concentrations

    Article Snippet: This in vitro study evaluated the antimicrobial effects of R. coriaria on common cariogenic microorganisms, including 1683 S. mutans (ATCC 35668), 1601 S. sobrinus (ATTC 27607), S. salivarius (ATCC 19258), 1237 E. faecalis (NCTC 8213) and 1643 L. acidophilus (DSM 20079) approved by the National Center for Genetic and Biological Resources of Iran in lyophilized form.

    Techniques: Inhibition

    MIC and MBC of the materials against the tested bacteria

    Journal: Medical Journal of the Islamic Republic of Iran

    Article Title: Antimicrobial Activity of Silver Nanoparticles Synthesized by the Green Method Using Rhus coriaria L . Extract Against Oral Pathogenic Microorganisms

    doi: 10.47176/mjiri.36.154

    Figure Lengend Snippet: MIC and MBC of the materials against the tested bacteria

    Article Snippet: This in vitro study evaluated the antimicrobial effects of R. coriaria on common cariogenic microorganisms, including 1683 S. mutans (ATCC 35668), 1601 S. sobrinus (ATTC 27607), S. salivarius (ATCC 19258), 1237 E. faecalis (NCTC 8213) and 1643 L. acidophilus (DSM 20079) approved by the National Center for Genetic and Biological Resources of Iran in lyophilized form.

    Techniques:

    (a) Chemical structure of the secondary cell wall polymer of Paenibacillus alvei showing the diphosphodiester linkage to the bacterial peptidoglycan. (b) Representation of a selected region of the EPS from Streptococcus thermophilus , showing the residues that are connected to the 3,9-dideoxy- d - threo - d -altro-nononic acid moiety. , (c) Representation of the open-chain d -GalNAc residue linked to a d -Galp residue via an acetal linkage, as present in the core oligosaccharides of Proteus penneri and Shewanella oneidensis . , (d) Chemical structure of the WTA of Bacillus subtilis . (e) Selected region of the O-antigen polysaccharide of Proteus mirabilis O38 showing the N -acetyl-phosphoethanolamine and N -acetyl- l -aspartic acid substituents.

    Journal: Chemical Reviews

    Article Title: Primary Structure of Glycans by NMR Spectroscopy

    doi: 10.1021/acs.chemrev.2c00580

    Figure Lengend Snippet: (a) Chemical structure of the secondary cell wall polymer of Paenibacillus alvei showing the diphosphodiester linkage to the bacterial peptidoglycan. (b) Representation of a selected region of the EPS from Streptococcus thermophilus , showing the residues that are connected to the 3,9-dideoxy- d - threo - d -altro-nononic acid moiety. , (c) Representation of the open-chain d -GalNAc residue linked to a d -Galp residue via an acetal linkage, as present in the core oligosaccharides of Proteus penneri and Shewanella oneidensis . , (d) Chemical structure of the WTA of Bacillus subtilis . (e) Selected region of the O-antigen polysaccharide of Proteus mirabilis O38 showing the N -acetyl-phosphoethanolamine and N -acetyl- l -aspartic acid substituents.

    Article Snippet: A derivatization process that uses ( S )-(+)-2-methylbutyric anhydride as reagent was first proposed by York et al. and has successfully been applied in the determination of the absolute configuration of different neutral monosaccharide components (viz., d -Glc, d -Gal, l -Rha, d -Rib, d -Xyl, l -Ara, and d -GlcN) present in the EPS of Nostoc commune DRH-1, S. thermophilus ST1 ( Figure ), the O-antigen polysaccharide of B. holmesii strain ATCC 51541, and glycosides from M. salicifolia bark.

    Techniques:

    Component analysis of the ST1 exopolysaccharide (EPS) from Streptococcus thermophilus by derivatization with chiral ( S )-(+)-2-methylbutyryl (SMB) groups. 1 H NMR spectra of the EPS-SMB hydrolysate (bottom), d -galactose-SMB (middle), and d -glucose-SMB (upper). Adapted and reproduced with permission from ref . Copyright 2010 Springer.

    Journal: Chemical Reviews

    Article Title: Primary Structure of Glycans by NMR Spectroscopy

    doi: 10.1021/acs.chemrev.2c00580

    Figure Lengend Snippet: Component analysis of the ST1 exopolysaccharide (EPS) from Streptococcus thermophilus by derivatization with chiral ( S )-(+)-2-methylbutyryl (SMB) groups. 1 H NMR spectra of the EPS-SMB hydrolysate (bottom), d -galactose-SMB (middle), and d -glucose-SMB (upper). Adapted and reproduced with permission from ref . Copyright 2010 Springer.

    Article Snippet: A derivatization process that uses ( S )-(+)-2-methylbutyric anhydride as reagent was first proposed by York et al. and has successfully been applied in the determination of the absolute configuration of different neutral monosaccharide components (viz., d -Glc, d -Gal, l -Rha, d -Rib, d -Xyl, l -Ara, and d -GlcN) present in the EPS of Nostoc commune DRH-1, S. thermophilus ST1 ( Figure ), the O-antigen polysaccharide of B. holmesii strain ATCC 51541, and glycosides from M. salicifolia bark.

    Techniques:

    Spectra from a PANSY NMR experiment utilizing dual receivers. The 1 H, 1 H-TOCSY spectrum, resulting from a 120 ms isotropic mixing time in the experiment, shows correlations from the six anomeric protons of the repeating unit in the ST1 EPS from Streptococcus thermophilus (top). During the spin-lock time, a separate one-dimensional 13 C experiment with proton decoupling was acquired (bottom). Reproduced with permission from ref . Copyright 2010 Springer Publisher.

    Journal: Chemical Reviews

    Article Title: Primary Structure of Glycans by NMR Spectroscopy

    doi: 10.1021/acs.chemrev.2c00580

    Figure Lengend Snippet: Spectra from a PANSY NMR experiment utilizing dual receivers. The 1 H, 1 H-TOCSY spectrum, resulting from a 120 ms isotropic mixing time in the experiment, shows correlations from the six anomeric protons of the repeating unit in the ST1 EPS from Streptococcus thermophilus (top). During the spin-lock time, a separate one-dimensional 13 C experiment with proton decoupling was acquired (bottom). Reproduced with permission from ref . Copyright 2010 Springer Publisher.

    Article Snippet: A derivatization process that uses ( S )-(+)-2-methylbutyric anhydride as reagent was first proposed by York et al. and has successfully been applied in the determination of the absolute configuration of different neutral monosaccharide components (viz., d -Glc, d -Gal, l -Rha, d -Rib, d -Xyl, l -Ara, and d -GlcN) present in the EPS of Nostoc commune DRH-1, S. thermophilus ST1 ( Figure ), the O-antigen polysaccharide of B. holmesii strain ATCC 51541, and glycosides from M. salicifolia bark.

    Techniques:

    Genomic features of a selected number of lactic acid bacteria related to human lifestyle and health.

    Journal: Microbial Cell Factories

    Article Title: Functional genomics of lactic acid bacteria: from food to health

    doi: 10.1186/1475-2859-13-S1-S8

    Figure Lengend Snippet: Genomic features of a selected number of lactic acid bacteria related to human lifestyle and health.

    Article Snippet: In addition, the number of pseudogenes is highly variable among LAB, i.e. S. thermophilus CNRZ1066 (182 pseudogenes) [ ] or Pediococcus pentosaceus ATCC 25745 (19 pseudogenes) [ ].

    Techniques: Isolation

    Evaluation of various culture media and incubation conditions for enumerating pure cultures of bifidobacteria and lactic acid bacteria strains <xref ref-type= * ." width="100%" height="100%">

    Journal: Brazilian Journal of Microbiology

    Article Title: Evaluation of culture media for selective enumeration of bifidobacteria and lactic acid bacteria

    doi:

    Figure Lengend Snippet: Evaluation of various culture media and incubation conditions for enumerating pure cultures of bifidobacteria and lactic acid bacteria strains * .

    Article Snippet: Streptococcus thermophilus TH-4 and S. thermophilus DSM 20479 were propagated in CASO broth at 37 °C for 48 h under aerobic conditions; Lc . lactis subsp. lactis ATCC 19435, Lc. lactis subsp. lactis biovar. diacetylactis VK-256, and Ln. mesenteroides subsp. dextranicum ATCC 19255 were grown in CASO broth at 30 °C for 72 h aerobically; whereas the rest of the strains tested in this study were incubated in MRS broth at 37 °C for 72 h in anaerobiosis.

    Techniques: Incubation