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s capitis subspecies  (ATCC)


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    ATCC s capitis subspecies
    Maximum-likelihood phylogeny based on core genome alignments of 186 S. <t>capitis</t> isolates, presenting the presence and absence of antimicrobial resistance genes. ML tree is midpoint rooted, and bootstrap support values were calculated from 1,000 replicates. The first color block represents rhierBAPS clustering, dots describe the setting where isolates were retrieved; green = commensal (including scalp samples from this study), red = clinical, and gray = unknown. Filled gray triangles describe scalp isolates from this study. <t>The</t> <t>subspecies</t> differentiation of S. capitis is presented as the subclades described as BAPS groups 1, 3, 4, and 5. The presence (colored blocks) and absence (white blocks) of antimicrobial resistance is denoted for each isolate (*Quaternary Ammonium Compounds). The scale bar represents the number of nucleotide substitutions per site. The figure was visualized using iTol v 4.2 (Letunic and Bork, ).
    S Capitis Subspecies, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Average 94 stars, based on 1 article reviews
    s capitis subspecies - by Bioz Stars, 2025-03
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    1) Product Images from "Comparative genomics of Staphylococcus capitis reveals species determinants"

    Article Title: Comparative genomics of Staphylococcus capitis reveals species determinants

    Journal: Frontiers in Microbiology

    doi: 10.3389/fmicb.2022.1005949

    Maximum-likelihood phylogeny based on core genome alignments of 186 S. capitis isolates, presenting the presence and absence of antimicrobial resistance genes. ML tree is midpoint rooted, and bootstrap support values were calculated from 1,000 replicates. The first color block represents rhierBAPS clustering, dots describe the setting where isolates were retrieved; green = commensal (including scalp samples from this study), red = clinical, and gray = unknown. Filled gray triangles describe scalp isolates from this study. The subspecies differentiation of S. capitis is presented as the subclades described as BAPS groups 1, 3, 4, and 5. The presence (colored blocks) and absence (white blocks) of antimicrobial resistance is denoted for each isolate (*Quaternary Ammonium Compounds). The scale bar represents the number of nucleotide substitutions per site. The figure was visualized using iTol v 4.2 (Letunic and Bork, ).
    Figure Legend Snippet: Maximum-likelihood phylogeny based on core genome alignments of 186 S. capitis isolates, presenting the presence and absence of antimicrobial resistance genes. ML tree is midpoint rooted, and bootstrap support values were calculated from 1,000 replicates. The first color block represents rhierBAPS clustering, dots describe the setting where isolates were retrieved; green = commensal (including scalp samples from this study), red = clinical, and gray = unknown. Filled gray triangles describe scalp isolates from this study. The subspecies differentiation of S. capitis is presented as the subclades described as BAPS groups 1, 3, 4, and 5. The presence (colored blocks) and absence (white blocks) of antimicrobial resistance is denoted for each isolate (*Quaternary Ammonium Compounds). The scale bar represents the number of nucleotide substitutions per site. The figure was visualized using iTol v 4.2 (Letunic and Bork, ).

    Techniques Used: Blocking Assay

    Maximum-likelihood phylogeny based on core genome alignments of 186 S. capitis isolates, presenting the presence and absence of genes linked to CoNS virulence potential. ML tree is midpoint rooted, and bootstrap support values were calculated from 1,000 replicates. The first color block represents rhierBAPS clustering, dots describe the setting where isolates were retrieved; green = commensal (including scalp samples from this study), red = clinical, and gray = unknown. Filled gray triangles describe scalp isolates from this study. The subspecies differentiation of S. capitis is presented as the subclades described as BAPS groups 1, 3, 4, and 5. The presence (colored blocks) and absence (white blocks) of virulence genes is denoted for each isolate. The scale bar represents the number of nucleotide substitutions per site. The figure was visualized using iTol v 4.2 (Letunic and Bork, ).
    Figure Legend Snippet: Maximum-likelihood phylogeny based on core genome alignments of 186 S. capitis isolates, presenting the presence and absence of genes linked to CoNS virulence potential. ML tree is midpoint rooted, and bootstrap support values were calculated from 1,000 replicates. The first color block represents rhierBAPS clustering, dots describe the setting where isolates were retrieved; green = commensal (including scalp samples from this study), red = clinical, and gray = unknown. Filled gray triangles describe scalp isolates from this study. The subspecies differentiation of S. capitis is presented as the subclades described as BAPS groups 1, 3, 4, and 5. The presence (colored blocks) and absence (white blocks) of virulence genes is denoted for each isolate. The scale bar represents the number of nucleotide substitutions per site. The figure was visualized using iTol v 4.2 (Letunic and Bork, ).

    Techniques Used: Blocking Assay

    Representation of the pan-genome and COG functional annotation of S. capitis genomes. (A) Pan-genome curve generated by plotting the total number of gene families in the pan (blue) and core (red) genome of S. capitis . The graph represents how the pan- and core-genomes vary as genomes are added in random order. As the number of genomes increased, the pan-genome increased. (B) Staphylococcus capitis pan-genome statistics. The size of the pan-genome, including core (shared by >95% of isolates), shell (found in 15–95% of isolates), and cloud (found in <15% of isolates) genes. (C) Functional annotation of the core and accessory genomes of S. capitis subsp. capitis and S. capitis subsp. ureolyticus . Percentages of the core and accessory genomes annotated according to COG functional categories.
    Figure Legend Snippet: Representation of the pan-genome and COG functional annotation of S. capitis genomes. (A) Pan-genome curve generated by plotting the total number of gene families in the pan (blue) and core (red) genome of S. capitis . The graph represents how the pan- and core-genomes vary as genomes are added in random order. As the number of genomes increased, the pan-genome increased. (B) Staphylococcus capitis pan-genome statistics. The size of the pan-genome, including core (shared by >95% of isolates), shell (found in 15–95% of isolates), and cloud (found in <15% of isolates) genes. (C) Functional annotation of the core and accessory genomes of S. capitis subsp. capitis and S. capitis subsp. ureolyticus . Percentages of the core and accessory genomes annotated according to COG functional categories.

    Techniques Used: Functional Assay, Generated

    Two-component systems in S. aureus and S. capitis .
    Figure Legend Snippet: Two-component systems in S. aureus and S. capitis .

    Techniques Used:

    Gene clusters found significantly enriched in either S. capitis ssp. capitis or ssp. ureolyticus ( p < 0.001).
    Figure Legend Snippet: Gene clusters found significantly enriched in either S. capitis ssp. capitis or ssp. ureolyticus ( p < 0.001).

    Techniques Used: Modification, Binding Assay



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    Maximum-likelihood phylogeny based on core genome alignments of 186 S. <t>capitis</t> isolates, presenting the presence and absence of antimicrobial resistance genes. ML tree is midpoint rooted, and bootstrap support values were calculated from 1,000 replicates. The first color block represents rhierBAPS clustering, dots describe the setting where isolates were retrieved; green = commensal (including scalp samples from this study), red = clinical, and gray = unknown. Filled gray triangles describe scalp isolates from this study. <t>The</t> <t>subspecies</t> differentiation of S. capitis is presented as the subclades described as BAPS groups 1, 3, 4, and 5. The presence (colored blocks) and absence (white blocks) of antimicrobial resistance is denoted for each isolate (*Quaternary Ammonium Compounds). The scale bar represents the number of nucleotide substitutions per site. The figure was visualized using iTol v 4.2 (Letunic and Bork, ).
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    Maximum-likelihood phylogeny based on core genome alignments of 186 S. capitis isolates, presenting the presence and absence of antimicrobial resistance genes. ML tree is midpoint rooted, and bootstrap support values were calculated from 1,000 replicates. The first color block represents rhierBAPS clustering, dots describe the setting where isolates were retrieved; green = commensal (including scalp samples from this study), red = clinical, and gray = unknown. Filled gray triangles describe scalp isolates from this study. The subspecies differentiation of S. capitis is presented as the subclades described as BAPS groups 1, 3, 4, and 5. The presence (colored blocks) and absence (white blocks) of antimicrobial resistance is denoted for each isolate (*Quaternary Ammonium Compounds). The scale bar represents the number of nucleotide substitutions per site. The figure was visualized using iTol v 4.2 (Letunic and Bork, ).

    Journal: Frontiers in Microbiology

    Article Title: Comparative genomics of Staphylococcus capitis reveals species determinants

    doi: 10.3389/fmicb.2022.1005949

    Figure Lengend Snippet: Maximum-likelihood phylogeny based on core genome alignments of 186 S. capitis isolates, presenting the presence and absence of antimicrobial resistance genes. ML tree is midpoint rooted, and bootstrap support values were calculated from 1,000 replicates. The first color block represents rhierBAPS clustering, dots describe the setting where isolates were retrieved; green = commensal (including scalp samples from this study), red = clinical, and gray = unknown. Filled gray triangles describe scalp isolates from this study. The subspecies differentiation of S. capitis is presented as the subclades described as BAPS groups 1, 3, 4, and 5. The presence (colored blocks) and absence (white blocks) of antimicrobial resistance is denoted for each isolate (*Quaternary Ammonium Compounds). The scale bar represents the number of nucleotide substitutions per site. The figure was visualized using iTol v 4.2 (Letunic and Bork, ).

    Article Snippet: Additionally, seven skin isolates were sequenced that included culture collection type strains of both S. capitis subspecies [ATCC 49325 ( S. capitis subsp. ureolyticus ) and ATCC 27840 ( S. capitis subsp. capitis )] ( ).

    Techniques: Blocking Assay

    Maximum-likelihood phylogeny based on core genome alignments of 186 S. capitis isolates, presenting the presence and absence of genes linked to CoNS virulence potential. ML tree is midpoint rooted, and bootstrap support values were calculated from 1,000 replicates. The first color block represents rhierBAPS clustering, dots describe the setting where isolates were retrieved; green = commensal (including scalp samples from this study), red = clinical, and gray = unknown. Filled gray triangles describe scalp isolates from this study. The subspecies differentiation of S. capitis is presented as the subclades described as BAPS groups 1, 3, 4, and 5. The presence (colored blocks) and absence (white blocks) of virulence genes is denoted for each isolate. The scale bar represents the number of nucleotide substitutions per site. The figure was visualized using iTol v 4.2 (Letunic and Bork, ).

    Journal: Frontiers in Microbiology

    Article Title: Comparative genomics of Staphylococcus capitis reveals species determinants

    doi: 10.3389/fmicb.2022.1005949

    Figure Lengend Snippet: Maximum-likelihood phylogeny based on core genome alignments of 186 S. capitis isolates, presenting the presence and absence of genes linked to CoNS virulence potential. ML tree is midpoint rooted, and bootstrap support values were calculated from 1,000 replicates. The first color block represents rhierBAPS clustering, dots describe the setting where isolates were retrieved; green = commensal (including scalp samples from this study), red = clinical, and gray = unknown. Filled gray triangles describe scalp isolates from this study. The subspecies differentiation of S. capitis is presented as the subclades described as BAPS groups 1, 3, 4, and 5. The presence (colored blocks) and absence (white blocks) of virulence genes is denoted for each isolate. The scale bar represents the number of nucleotide substitutions per site. The figure was visualized using iTol v 4.2 (Letunic and Bork, ).

    Article Snippet: Additionally, seven skin isolates were sequenced that included culture collection type strains of both S. capitis subspecies [ATCC 49325 ( S. capitis subsp. ureolyticus ) and ATCC 27840 ( S. capitis subsp. capitis )] ( ).

    Techniques: Blocking Assay

    Representation of the pan-genome and COG functional annotation of S. capitis genomes. (A) Pan-genome curve generated by plotting the total number of gene families in the pan (blue) and core (red) genome of S. capitis . The graph represents how the pan- and core-genomes vary as genomes are added in random order. As the number of genomes increased, the pan-genome increased. (B) Staphylococcus capitis pan-genome statistics. The size of the pan-genome, including core (shared by >95% of isolates), shell (found in 15–95% of isolates), and cloud (found in <15% of isolates) genes. (C) Functional annotation of the core and accessory genomes of S. capitis subsp. capitis and S. capitis subsp. ureolyticus . Percentages of the core and accessory genomes annotated according to COG functional categories.

    Journal: Frontiers in Microbiology

    Article Title: Comparative genomics of Staphylococcus capitis reveals species determinants

    doi: 10.3389/fmicb.2022.1005949

    Figure Lengend Snippet: Representation of the pan-genome and COG functional annotation of S. capitis genomes. (A) Pan-genome curve generated by plotting the total number of gene families in the pan (blue) and core (red) genome of S. capitis . The graph represents how the pan- and core-genomes vary as genomes are added in random order. As the number of genomes increased, the pan-genome increased. (B) Staphylococcus capitis pan-genome statistics. The size of the pan-genome, including core (shared by >95% of isolates), shell (found in 15–95% of isolates), and cloud (found in <15% of isolates) genes. (C) Functional annotation of the core and accessory genomes of S. capitis subsp. capitis and S. capitis subsp. ureolyticus . Percentages of the core and accessory genomes annotated according to COG functional categories.

    Article Snippet: Additionally, seven skin isolates were sequenced that included culture collection type strains of both S. capitis subspecies [ATCC 49325 ( S. capitis subsp. ureolyticus ) and ATCC 27840 ( S. capitis subsp. capitis )] ( ).

    Techniques: Functional Assay, Generated

    Two-component systems in S. aureus and S. capitis .

    Journal: Frontiers in Microbiology

    Article Title: Comparative genomics of Staphylococcus capitis reveals species determinants

    doi: 10.3389/fmicb.2022.1005949

    Figure Lengend Snippet: Two-component systems in S. aureus and S. capitis .

    Article Snippet: Additionally, seven skin isolates were sequenced that included culture collection type strains of both S. capitis subspecies [ATCC 49325 ( S. capitis subsp. ureolyticus ) and ATCC 27840 ( S. capitis subsp. capitis )] ( ).

    Techniques:

    Gene clusters found significantly enriched in either S. capitis ssp. capitis or ssp. ureolyticus ( p < 0.001).

    Journal: Frontiers in Microbiology

    Article Title: Comparative genomics of Staphylococcus capitis reveals species determinants

    doi: 10.3389/fmicb.2022.1005949

    Figure Lengend Snippet: Gene clusters found significantly enriched in either S. capitis ssp. capitis or ssp. ureolyticus ( p < 0.001).

    Article Snippet: Additionally, seven skin isolates were sequenced that included culture collection type strains of both S. capitis subspecies [ATCC 49325 ( S. capitis subsp. ureolyticus ) and ATCC 27840 ( S. capitis subsp. capitis )] ( ).

    Techniques: Modification, Binding Assay