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simplot software  (Simplot Science)

 
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    Simplot Science simplot software
    Recombination analysis. a Similarity plot generated by SIMPLOT software based on 462 nt of ORF2 sequence using B2/2005 as query sequence and representative parent sequence of genotypes PCV2d (red) and PCV2a (blue) (JX535296 and AY180397, respectively). A PCV1 isolate was used as outgroup (green). The analysis was performed with a window size of 100 nt and a step size of 20 nt. b BootScan analysis and potential breakpoints for B2/2005 predicted by <t>RDP3</t> software
    Simplot Software, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/simplot software/product/Simplot Science
    Average 90 stars, based on 1 article reviews
    simplot software - by Bioz Stars, 2026-04
    90/100 stars

    Images

    1) Product Images from "Genetic analysis of porcine circovirus type 2 from pigs affected with PMWS in Chile reveals intergenotypic recombination"

    Article Title: Genetic analysis of porcine circovirus type 2 from pigs affected with PMWS in Chile reveals intergenotypic recombination

    Journal: Virology Journal

    doi: 10.1186/s12985-017-0850-1

    Recombination analysis. a Similarity plot generated by SIMPLOT software based on 462 nt of ORF2 sequence using B2/2005 as query sequence and representative parent sequence of genotypes PCV2d (red) and PCV2a (blue) (JX535296 and AY180397, respectively). A PCV1 isolate was used as outgroup (green). The analysis was performed with a window size of 100 nt and a step size of 20 nt. b BootScan analysis and potential breakpoints for B2/2005 predicted by RDP3 software
    Figure Legend Snippet: Recombination analysis. a Similarity plot generated by SIMPLOT software based on 462 nt of ORF2 sequence using B2/2005 as query sequence and representative parent sequence of genotypes PCV2d (red) and PCV2a (blue) (JX535296 and AY180397, respectively). A PCV1 isolate was used as outgroup (green). The analysis was performed with a window size of 100 nt and a step size of 20 nt. b BootScan analysis and potential breakpoints for B2/2005 predicted by RDP3 software

    Techniques Used: Generated, Software, Sequencing



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