photorhabdus asymbiotica subsp asymbiotica atcc 43949  (ATCC)


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    ATCC photorhabdus asymbiotica subsp asymbiotica atcc 43949
    Analysis of nov genes located in ‘intergenic’ regions in P. fluorescens Pf0-1.
    Photorhabdus Asymbiotica Subsp Asymbiotica Atcc 43949, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Average 94 stars, based on 1 article reviews
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    Images

    1) Product Images from "Proteomic Detection of Non-Annotated Protein-Coding Genes in Pseudomonas fluorescens Pf0-1"

    Article Title: Proteomic Detection of Non-Annotated Protein-Coding Genes in Pseudomonas fluorescens Pf0-1

    Journal: PLoS ONE

    doi: 10.1371/journal.pone.0008455

    Analysis of nov genes located in ‘intergenic’ regions in P. fluorescens Pf0-1.
    Figure Legend Snippet: Analysis of nov genes located in ‘intergenic’ regions in P. fluorescens Pf0-1.

    Techniques Used: Sequencing

    photorhabdus asymbiotica subsp asymbiotica atcc 43949  (ATCC)


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    ATCC photorhabdus asymbiotica subsp asymbiotica atcc 43949
    Analysis of nov genes located in ‘intergenic’ regions in P. fluorescens Pf0-1.
    Photorhabdus Asymbiotica Subsp Asymbiotica Atcc 43949, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/photorhabdus asymbiotica subsp asymbiotica atcc 43949/product/ATCC
    Average 94 stars, based on 1 article reviews
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    94/100 stars

    Images

    1) Product Images from "Proteomic Detection of Non-Annotated Protein-Coding Genes in Pseudomonas fluorescens Pf0-1"

    Article Title: Proteomic Detection of Non-Annotated Protein-Coding Genes in Pseudomonas fluorescens Pf0-1

    Journal: PLoS ONE

    doi: 10.1371/journal.pone.0008455

    Analysis of nov genes located in ‘intergenic’ regions in P. fluorescens Pf0-1.
    Figure Legend Snippet: Analysis of nov genes located in ‘intergenic’ regions in P. fluorescens Pf0-1.

    Techniques Used: Sequencing

    photorhabdus asymbiotica atcc 43949  (ATCC)


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    ATCC photorhabdus asymbiotica atcc 43949
    Short list of bacterial taxa associated with animals encoding proteins with the PF13402 domain.
    Photorhabdus Asymbiotica Atcc 43949, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Average 94 stars, based on 1 article reviews
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    94/100 stars

    Images

    1) Product Images from "A Novel Extracellular Metallopeptidase Domain Shared by Animal Host-Associated Mutualistic and Pathogenic Microbes"

    Article Title: A Novel Extracellular Metallopeptidase Domain Shared by Animal Host-Associated Mutualistic and Pathogenic Microbes

    Journal: PLoS ONE

    doi: 10.1371/journal.pone.0030287

    Short list of bacterial taxa associated with animals encoding proteins with the PF13402 domain.
    Figure Legend Snippet: Short list of bacterial taxa associated with animals encoding proteins with the PF13402 domain.

    Techniques Used:

    p asymbiotica atcc 43949  (ATCC)


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    ATCC p asymbiotica atcc 43949
    Classification of RGPs in the P. luminescens TT01, P. asymbiotica <t> ATCC43949, </t> X. nematophila ATCC19061 and X. bovienii SS-2004 genomes as a function of their genetic composition (the proportion of the modules belonging to a given class is indicated in parentheses)
    P Asymbiotica Atcc 43949, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    94/100 stars

    Images

    1) Product Images from "Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus"

    Article Title: Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus

    Journal: BMC Genomics

    doi: 10.1186/1471-2164-11-568

    Classification of RGPs in the P. luminescens TT01, P. asymbiotica ATCC43949, X. nematophila ATCC19061 and X. bovienii SS-2004 genomes as a function of their genetic composition (the proportion of the modules belonging to a given class is indicated in parentheses)
    Figure Legend Snippet: Classification of RGPs in the P. luminescens TT01, P. asymbiotica ATCC43949, X. nematophila ATCC19061 and X. bovienii SS-2004 genomes as a function of their genetic composition (the proportion of the modules belonging to a given class is indicated in parentheses)

    Techniques Used:

    p asymbiotica atcc 43949  (ATCC)


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    ATCC p asymbiotica atcc 43949
    Shown are schematic maps of the X. nematophila chromosome (A) the X. nematophila plasmid (B) and the X. bovienii chromosome (C). In all three maps, the outer circle represents scale in base pair coordinates, and moving inward, circles 1 and 2 indicate predicted coding regions transcribed clockwise and counterclockwise respectively. Coding sequences are color coded by their Clusters of Orthologous Groups of proteins (COG) assignments. Information storage and processing: green, translation, ribosomal structure and biogenesis; forest green, RNA processing and modification; sea green, transcription; medium aquamarine, replication, recombination and repair; aquamarine, chromatin structure and dynamics; Cellular processes and signaling: blue; cell cycle control, cell division, chromosome partitioning; purple, nuclear structure; magenta, defense mechanisms; turquoise, signal transduction mechanisms; sky blue, cell wall/membrane/envelope biogenesis; medium blue, cell motility; royal blue, cytoskeleton; slate blue, extracellular structures; cornflower blue, intracellular trafficking, secretion, and vesicular transport; lavender, posttranslational modification, protein turnover, chaperones; Metabolism: red, energy production and conversion; yellow, carbohydrate transport and metabolism; orange, amino acid transport and metabolism; salmon, nucleotide transport and metabolism; pink, coenzyme transport and metabolism; chocolate, lipid transport and metabolism; gold, inorganic ion transport and metabolism; firebrick, secondary metabolites biosynthesis, transport and catabolism; Poorly characterized: black, general function prediction only; gray, function unknown. In (A) and (C) circle 3 shows coding regions for non-ribosomal peptide and polyketide synthases, while circle 4 shows genes present in the respective genome, but absent from Escherichia coli K12 MG1655; Photorhabdus luminescens TTO1; P. asymbiotica <t>ATCC</t> <t>43949</t> and Salmonella typhimurium LT2. For all three maps the innermost circle represents the GC content in 1000-bp windows relative to the mean GC content of the whole sequence.
    P Asymbiotica Atcc 43949, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/p asymbiotica atcc 43949/product/ATCC
    Average 94 stars, based on 1 article reviews
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    p asymbiotica atcc 43949 - by Bioz Stars, 2023-01
    94/100 stars

    Images

    1) Product Images from "The Entomopathogenic Bacterial Endosymbionts Xenorhabdus and Photorhabdus : Convergent Lifestyles from Divergent Genomes"

    Article Title: The Entomopathogenic Bacterial Endosymbionts Xenorhabdus and Photorhabdus : Convergent Lifestyles from Divergent Genomes

    Journal: PLoS ONE

    doi: 10.1371/journal.pone.0027909

    Shown are schematic maps of the X. nematophila chromosome (A) the X. nematophila plasmid (B) and the X. bovienii chromosome (C). In all three maps, the outer circle represents scale in base pair coordinates, and moving inward, circles 1 and 2 indicate predicted coding regions transcribed clockwise and counterclockwise respectively. Coding sequences are color coded by their Clusters of Orthologous Groups of proteins (COG) assignments. Information storage and processing: green, translation, ribosomal structure and biogenesis; forest green, RNA processing and modification; sea green, transcription; medium aquamarine, replication, recombination and repair; aquamarine, chromatin structure and dynamics; Cellular processes and signaling: blue; cell cycle control, cell division, chromosome partitioning; purple, nuclear structure; magenta, defense mechanisms; turquoise, signal transduction mechanisms; sky blue, cell wall/membrane/envelope biogenesis; medium blue, cell motility; royal blue, cytoskeleton; slate blue, extracellular structures; cornflower blue, intracellular trafficking, secretion, and vesicular transport; lavender, posttranslational modification, protein turnover, chaperones; Metabolism: red, energy production and conversion; yellow, carbohydrate transport and metabolism; orange, amino acid transport and metabolism; salmon, nucleotide transport and metabolism; pink, coenzyme transport and metabolism; chocolate, lipid transport and metabolism; gold, inorganic ion transport and metabolism; firebrick, secondary metabolites biosynthesis, transport and catabolism; Poorly characterized: black, general function prediction only; gray, function unknown. In (A) and (C) circle 3 shows coding regions for non-ribosomal peptide and polyketide synthases, while circle 4 shows genes present in the respective genome, but absent from Escherichia coli K12 MG1655; Photorhabdus luminescens TTO1; P. asymbiotica ATCC 43949 and Salmonella typhimurium LT2. For all three maps the innermost circle represents the GC content in 1000-bp windows relative to the mean GC content of the whole sequence.
    Figure Legend Snippet: Shown are schematic maps of the X. nematophila chromosome (A) the X. nematophila plasmid (B) and the X. bovienii chromosome (C). In all three maps, the outer circle represents scale in base pair coordinates, and moving inward, circles 1 and 2 indicate predicted coding regions transcribed clockwise and counterclockwise respectively. Coding sequences are color coded by their Clusters of Orthologous Groups of proteins (COG) assignments. Information storage and processing: green, translation, ribosomal structure and biogenesis; forest green, RNA processing and modification; sea green, transcription; medium aquamarine, replication, recombination and repair; aquamarine, chromatin structure and dynamics; Cellular processes and signaling: blue; cell cycle control, cell division, chromosome partitioning; purple, nuclear structure; magenta, defense mechanisms; turquoise, signal transduction mechanisms; sky blue, cell wall/membrane/envelope biogenesis; medium blue, cell motility; royal blue, cytoskeleton; slate blue, extracellular structures; cornflower blue, intracellular trafficking, secretion, and vesicular transport; lavender, posttranslational modification, protein turnover, chaperones; Metabolism: red, energy production and conversion; yellow, carbohydrate transport and metabolism; orange, amino acid transport and metabolism; salmon, nucleotide transport and metabolism; pink, coenzyme transport and metabolism; chocolate, lipid transport and metabolism; gold, inorganic ion transport and metabolism; firebrick, secondary metabolites biosynthesis, transport and catabolism; Poorly characterized: black, general function prediction only; gray, function unknown. In (A) and (C) circle 3 shows coding regions for non-ribosomal peptide and polyketide synthases, while circle 4 shows genes present in the respective genome, but absent from Escherichia coli K12 MG1655; Photorhabdus luminescens TTO1; P. asymbiotica ATCC 43949 and Salmonella typhimurium LT2. For all three maps the innermost circle represents the GC content in 1000-bp windows relative to the mean GC content of the whole sequence.

    Techniques Used: Plasmid Preparation, Modification, Transduction, Sequencing


    Figure Legend Snippet: Comparison of the genomic features in Xenorhabdus nematophila ATCC 19061, Xenorhabdus bovienii SS-2004, Photorabdus luminescens TT01, and Photorhabdus asymbiotica ATCC 43949.

    Techniques Used:

    p asymbiotica atcc 43949  (ATCC)


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    ATCC p asymbiotica atcc 43949
    Shown are schematic maps of the X. nematophila chromosome (A) the X. nematophila plasmid (B) and the X. bovienii chromosome (C). In all three maps, the outer circle represents scale in base pair coordinates, and moving inward, circles 1 and 2 indicate predicted coding regions transcribed clockwise and counterclockwise respectively. Coding sequences are color coded by their Clusters of Orthologous Groups of proteins (COG) assignments. Information storage and processing: green, translation, ribosomal structure and biogenesis; forest green, RNA processing and modification; sea green, transcription; medium aquamarine, replication, recombination and repair; aquamarine, chromatin structure and dynamics; Cellular processes and signaling: blue; cell cycle control, cell division, chromosome partitioning; purple, nuclear structure; magenta, defense mechanisms; turquoise, signal transduction mechanisms; sky blue, cell wall/membrane/envelope biogenesis; medium blue, cell motility; royal blue, cytoskeleton; slate blue, extracellular structures; cornflower blue, intracellular trafficking, secretion, and vesicular transport; lavender, posttranslational modification, protein turnover, chaperones; Metabolism: red, energy production and conversion; yellow, carbohydrate transport and metabolism; orange, amino acid transport and metabolism; salmon, nucleotide transport and metabolism; pink, coenzyme transport and metabolism; chocolate, lipid transport and metabolism; gold, inorganic ion transport and metabolism; firebrick, secondary metabolites biosynthesis, transport and catabolism; Poorly characterized: black, general function prediction only; gray, function unknown. In (A) and (C) circle 3 shows coding regions for non-ribosomal peptide and polyketide synthases, while circle 4 shows genes present in the respective genome, but absent from Escherichia coli K12 MG1655; Photorhabdus luminescens TTO1; P. asymbiotica <t>ATCC</t> <t>43949</t> and Salmonella typhimurium LT2. For all three maps the innermost circle represents the GC content in 1000-bp windows relative to the mean GC content of the whole sequence.
    P Asymbiotica Atcc 43949, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/p asymbiotica atcc 43949/product/ATCC
    Average 94 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    p asymbiotica atcc 43949 - by Bioz Stars, 2023-01
    94/100 stars

    Images

    1) Product Images from "The Entomopathogenic Bacterial Endosymbionts Xenorhabdus and Photorhabdus : Convergent Lifestyles from Divergent Genomes"

    Article Title: The Entomopathogenic Bacterial Endosymbionts Xenorhabdus and Photorhabdus : Convergent Lifestyles from Divergent Genomes

    Journal: PLoS ONE

    doi: 10.1371/journal.pone.0027909

    Shown are schematic maps of the X. nematophila chromosome (A) the X. nematophila plasmid (B) and the X. bovienii chromosome (C). In all three maps, the outer circle represents scale in base pair coordinates, and moving inward, circles 1 and 2 indicate predicted coding regions transcribed clockwise and counterclockwise respectively. Coding sequences are color coded by their Clusters of Orthologous Groups of proteins (COG) assignments. Information storage and processing: green, translation, ribosomal structure and biogenesis; forest green, RNA processing and modification; sea green, transcription; medium aquamarine, replication, recombination and repair; aquamarine, chromatin structure and dynamics; Cellular processes and signaling: blue; cell cycle control, cell division, chromosome partitioning; purple, nuclear structure; magenta, defense mechanisms; turquoise, signal transduction mechanisms; sky blue, cell wall/membrane/envelope biogenesis; medium blue, cell motility; royal blue, cytoskeleton; slate blue, extracellular structures; cornflower blue, intracellular trafficking, secretion, and vesicular transport; lavender, posttranslational modification, protein turnover, chaperones; Metabolism: red, energy production and conversion; yellow, carbohydrate transport and metabolism; orange, amino acid transport and metabolism; salmon, nucleotide transport and metabolism; pink, coenzyme transport and metabolism; chocolate, lipid transport and metabolism; gold, inorganic ion transport and metabolism; firebrick, secondary metabolites biosynthesis, transport and catabolism; Poorly characterized: black, general function prediction only; gray, function unknown. In (A) and (C) circle 3 shows coding regions for non-ribosomal peptide and polyketide synthases, while circle 4 shows genes present in the respective genome, but absent from Escherichia coli K12 MG1655; Photorhabdus luminescens TTO1; P. asymbiotica ATCC 43949 and Salmonella typhimurium LT2. For all three maps the innermost circle represents the GC content in 1000-bp windows relative to the mean GC content of the whole sequence.
    Figure Legend Snippet: Shown are schematic maps of the X. nematophila chromosome (A) the X. nematophila plasmid (B) and the X. bovienii chromosome (C). In all three maps, the outer circle represents scale in base pair coordinates, and moving inward, circles 1 and 2 indicate predicted coding regions transcribed clockwise and counterclockwise respectively. Coding sequences are color coded by their Clusters of Orthologous Groups of proteins (COG) assignments. Information storage and processing: green, translation, ribosomal structure and biogenesis; forest green, RNA processing and modification; sea green, transcription; medium aquamarine, replication, recombination and repair; aquamarine, chromatin structure and dynamics; Cellular processes and signaling: blue; cell cycle control, cell division, chromosome partitioning; purple, nuclear structure; magenta, defense mechanisms; turquoise, signal transduction mechanisms; sky blue, cell wall/membrane/envelope biogenesis; medium blue, cell motility; royal blue, cytoskeleton; slate blue, extracellular structures; cornflower blue, intracellular trafficking, secretion, and vesicular transport; lavender, posttranslational modification, protein turnover, chaperones; Metabolism: red, energy production and conversion; yellow, carbohydrate transport and metabolism; orange, amino acid transport and metabolism; salmon, nucleotide transport and metabolism; pink, coenzyme transport and metabolism; chocolate, lipid transport and metabolism; gold, inorganic ion transport and metabolism; firebrick, secondary metabolites biosynthesis, transport and catabolism; Poorly characterized: black, general function prediction only; gray, function unknown. In (A) and (C) circle 3 shows coding regions for non-ribosomal peptide and polyketide synthases, while circle 4 shows genes present in the respective genome, but absent from Escherichia coli K12 MG1655; Photorhabdus luminescens TTO1; P. asymbiotica ATCC 43949 and Salmonella typhimurium LT2. For all three maps the innermost circle represents the GC content in 1000-bp windows relative to the mean GC content of the whole sequence.

    Techniques Used: Plasmid Preparation, Modification, Transduction, Sequencing


    Figure Legend Snippet: Comparison of the genomic features in Xenorhabdus nematophila ATCC 19061, Xenorhabdus bovienii SS-2004, Photorabdus luminescens TT01, and Photorhabdus asymbiotica ATCC 43949.

    Techniques Used:

    photorhabdus asymbiotica atcc 43950  (ATCC)


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    ATCC photorhabdus asymbiotica atcc 43950
    Photorhabdus Asymbiotica Atcc 43950, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    photorhabdus asymbiotica atcc 43949  (ATCC)


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    ATCC photorhabdus asymbiotica atcc 43949
    Photorhabdus Asymbiotica Atcc 43949, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/photorhabdus asymbiotica atcc 43949/product/ATCC
    Average 94 stars, based on 1 article reviews
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    photorhabdus asymbiotica atcc 43949 - by Bioz Stars, 2023-01
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    photorhabdus asymbiotica subsp asymbiotica atcc 43949  (ATCC)


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    Structured Review

    ATCC photorhabdus asymbiotica subsp asymbiotica atcc 43949
    ( a ) Visualisation of the structural alignment made with mTM-align for fifteen experimentally determined sheath proteins (deletion mutant of Escherichia phage T4 TShP; Desulfitobacterium hafniense prophage TShP; Listeria innocua prophage TShP; Staphylococcus phage 812 TShP; R-type bacteriocin sheath protein from Peptoclostridium difficile ; pyocin R2 sheath protein from Pseudomonas aeruginosa ; sheath proteins of the type VI secretion system from Francisella tularensis subsp. novicida , Pseudomonas aeruginosa , and Vibrio cholerae ; anti-feeding prophage sheaths from Serratia entomophila and <t>Photorhabdus</t> asymbiotica ). The proteins are depicted as ribbons. The parts with a maximum pairwise residue distance of less than 4 Å are coloured magenta. ( b ) Visualisation of the structural alignment of the fifteen modelled sheath proteins obtained by the translation of genes encoding the proteins used for the experimentally determined structures listed in a. ( c ) Structural alignment of the fifteen modelled sheath proteins obtained by the translation of genes encoding the proteins used for the experimentally determined structures listed in a. Columns in magenta have a maximum pairwise residue distance of less than 4Å. The insertions interrupting the conserved domains of phages T4 and 812 are coloured blue. ( d ) The 3D-model of the TShP of Staphylococcus phage 812, coloured according to a rainbow gradient scheme, where the N-terminus of the polypeptide chain is coloured blue, the C-terminus is coloured red, and the model superimposed with the “common core” of the experimentally determined sheath is coloured magenta.
    Photorhabdus Asymbiotica Subsp Asymbiotica Atcc 43949, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Images

    1) Product Images from "Evolution of Phage Tail Sheath Protein"

    Article Title: Evolution of Phage Tail Sheath Protein

    Journal: Viruses

    doi: 10.3390/v14061148

    ( a ) Visualisation of the structural alignment made with mTM-align for fifteen experimentally determined sheath proteins (deletion mutant of Escherichia phage T4 TShP; Desulfitobacterium hafniense prophage TShP; Listeria innocua prophage TShP; Staphylococcus phage 812 TShP; R-type bacteriocin sheath protein from Peptoclostridium difficile ; pyocin R2 sheath protein from Pseudomonas aeruginosa ; sheath proteins of the type VI secretion system from Francisella tularensis subsp. novicida , Pseudomonas aeruginosa , and Vibrio cholerae ; anti-feeding prophage sheaths from Serratia entomophila and Photorhabdus asymbiotica ). The proteins are depicted as ribbons. The parts with a maximum pairwise residue distance of less than 4 Å are coloured magenta. ( b ) Visualisation of the structural alignment of the fifteen modelled sheath proteins obtained by the translation of genes encoding the proteins used for the experimentally determined structures listed in a. ( c ) Structural alignment of the fifteen modelled sheath proteins obtained by the translation of genes encoding the proteins used for the experimentally determined structures listed in a. Columns in magenta have a maximum pairwise residue distance of less than 4Å. The insertions interrupting the conserved domains of phages T4 and 812 are coloured blue. ( d ) The 3D-model of the TShP of Staphylococcus phage 812, coloured according to a rainbow gradient scheme, where the N-terminus of the polypeptide chain is coloured blue, the C-terminus is coloured red, and the model superimposed with the “common core” of the experimentally determined sheath is coloured magenta.
    Figure Legend Snippet: ( a ) Visualisation of the structural alignment made with mTM-align for fifteen experimentally determined sheath proteins (deletion mutant of Escherichia phage T4 TShP; Desulfitobacterium hafniense prophage TShP; Listeria innocua prophage TShP; Staphylococcus phage 812 TShP; R-type bacteriocin sheath protein from Peptoclostridium difficile ; pyocin R2 sheath protein from Pseudomonas aeruginosa ; sheath proteins of the type VI secretion system from Francisella tularensis subsp. novicida , Pseudomonas aeruginosa , and Vibrio cholerae ; anti-feeding prophage sheaths from Serratia entomophila and Photorhabdus asymbiotica ). The proteins are depicted as ribbons. The parts with a maximum pairwise residue distance of less than 4 Å are coloured magenta. ( b ) Visualisation of the structural alignment of the fifteen modelled sheath proteins obtained by the translation of genes encoding the proteins used for the experimentally determined structures listed in a. ( c ) Structural alignment of the fifteen modelled sheath proteins obtained by the translation of genes encoding the proteins used for the experimentally determined structures listed in a. Columns in magenta have a maximum pairwise residue distance of less than 4Å. The insertions interrupting the conserved domains of phages T4 and 812 are coloured blue. ( d ) The 3D-model of the TShP of Staphylococcus phage 812, coloured according to a rainbow gradient scheme, where the N-terminus of the polypeptide chain is coloured blue, the C-terminus is coloured red, and the model superimposed with the “common core” of the experimentally determined sheath is coloured magenta.

    Techniques Used: Mutagenesis

    List of 153 contractile sheath proteins and homologous sequences for which the tertiary structures have been modelled.
    Figure Legend Snippet: List of 153 contractile sheath proteins and homologous sequences for which the tertiary structures have been modelled.

    Techniques Used: Plasmid Preparation

    photorhabdus asymbiotica subsp asymbiotica atcc 43949  (ATCC)


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    Structured Review

    ATCC photorhabdus asymbiotica subsp asymbiotica atcc 43949
    ( a ) Visualisation of the structural alignment made with mTM-align for fifteen experimentally determined sheath proteins (deletion mutant of Escherichia phage T4 TShP; Desulfitobacterium hafniense prophage TShP; Listeria innocua prophage TShP; Staphylococcus phage 812 TShP; R-type bacteriocin sheath protein from Peptoclostridium difficile ; pyocin R2 sheath protein from Pseudomonas aeruginosa ; sheath proteins of the type VI secretion system from Francisella tularensis subsp. novicida , Pseudomonas aeruginosa , and Vibrio cholerae ; anti-feeding prophage sheaths from Serratia entomophila and <t>Photorhabdus</t> asymbiotica ). The proteins are depicted as ribbons. The parts with a maximum pairwise residue distance of less than 4 Å are coloured magenta. ( b ) Visualisation of the structural alignment of the fifteen modelled sheath proteins obtained by the translation of genes encoding the proteins used for the experimentally determined structures listed in a. ( c ) Structural alignment of the fifteen modelled sheath proteins obtained by the translation of genes encoding the proteins used for the experimentally determined structures listed in a. Columns in magenta have a maximum pairwise residue distance of less than 4Å. The insertions interrupting the conserved domains of phages T4 and 812 are coloured blue. ( d ) The 3D-model of the TShP of Staphylococcus phage 812, coloured according to a rainbow gradient scheme, where the N-terminus of the polypeptide chain is coloured blue, the C-terminus is coloured red, and the model superimposed with the “common core” of the experimentally determined sheath is coloured magenta.
    Photorhabdus Asymbiotica Subsp Asymbiotica Atcc 43949, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Images

    1) Product Images from "Evolution of Phage Tail Sheath Protein"

    Article Title: Evolution of Phage Tail Sheath Protein

    Journal: Viruses

    doi: 10.3390/v14061148

    ( a ) Visualisation of the structural alignment made with mTM-align for fifteen experimentally determined sheath proteins (deletion mutant of Escherichia phage T4 TShP; Desulfitobacterium hafniense prophage TShP; Listeria innocua prophage TShP; Staphylococcus phage 812 TShP; R-type bacteriocin sheath protein from Peptoclostridium difficile ; pyocin R2 sheath protein from Pseudomonas aeruginosa ; sheath proteins of the type VI secretion system from Francisella tularensis subsp. novicida , Pseudomonas aeruginosa , and Vibrio cholerae ; anti-feeding prophage sheaths from Serratia entomophila and Photorhabdus asymbiotica ). The proteins are depicted as ribbons. The parts with a maximum pairwise residue distance of less than 4 Å are coloured magenta. ( b ) Visualisation of the structural alignment of the fifteen modelled sheath proteins obtained by the translation of genes encoding the proteins used for the experimentally determined structures listed in a. ( c ) Structural alignment of the fifteen modelled sheath proteins obtained by the translation of genes encoding the proteins used for the experimentally determined structures listed in a. Columns in magenta have a maximum pairwise residue distance of less than 4Å. The insertions interrupting the conserved domains of phages T4 and 812 are coloured blue. ( d ) The 3D-model of the TShP of Staphylococcus phage 812, coloured according to a rainbow gradient scheme, where the N-terminus of the polypeptide chain is coloured blue, the C-terminus is coloured red, and the model superimposed with the “common core” of the experimentally determined sheath is coloured magenta.
    Figure Legend Snippet: ( a ) Visualisation of the structural alignment made with mTM-align for fifteen experimentally determined sheath proteins (deletion mutant of Escherichia phage T4 TShP; Desulfitobacterium hafniense prophage TShP; Listeria innocua prophage TShP; Staphylococcus phage 812 TShP; R-type bacteriocin sheath protein from Peptoclostridium difficile ; pyocin R2 sheath protein from Pseudomonas aeruginosa ; sheath proteins of the type VI secretion system from Francisella tularensis subsp. novicida , Pseudomonas aeruginosa , and Vibrio cholerae ; anti-feeding prophage sheaths from Serratia entomophila and Photorhabdus asymbiotica ). The proteins are depicted as ribbons. The parts with a maximum pairwise residue distance of less than 4 Å are coloured magenta. ( b ) Visualisation of the structural alignment of the fifteen modelled sheath proteins obtained by the translation of genes encoding the proteins used for the experimentally determined structures listed in a. ( c ) Structural alignment of the fifteen modelled sheath proteins obtained by the translation of genes encoding the proteins used for the experimentally determined structures listed in a. Columns in magenta have a maximum pairwise residue distance of less than 4Å. The insertions interrupting the conserved domains of phages T4 and 812 are coloured blue. ( d ) The 3D-model of the TShP of Staphylococcus phage 812, coloured according to a rainbow gradient scheme, where the N-terminus of the polypeptide chain is coloured blue, the C-terminus is coloured red, and the model superimposed with the “common core” of the experimentally determined sheath is coloured magenta.

    Techniques Used: Mutagenesis

    List of 153 contractile sheath proteins and homologous sequences for which the tertiary structures have been modelled.
    Figure Legend Snippet: List of 153 contractile sheath proteins and homologous sequences for which the tertiary structures have been modelled.

    Techniques Used: Plasmid Preparation

    photorhabdus asymbiotica atcc 43949  (ATCC)


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    Structured Review

    ATCC photorhabdus asymbiotica atcc 43949
    Genomic environment of the oatA gene in the Photorhabdus (A) and Xenorhabdus (B) genomes. Blue box, odl -BGC region; pink boxes, genomic regions framing the odl -BGC region encoding several enzymes, including OatA (the asterisk shows a highly shuffled subregion with a variable gene content according to the strain); gray boxes, core genome (different motifs indicate different regions of core genomes). GC content ({G or C}/{A, T, G, or C}) was calculated for a sliding window with a length of 25 nucleotides and plotted with SnapGene software (from Insightful Science). (A) Strains from clade P-I containing the oatA ortholog include P. luminescens subsp. luminescens DSM 3368, P. luminescens HIM3, P. namnanoensis PB45.5, and Photorhabdus sp. H1. Strains from the clade P-I which totally lack the oatA ortholog include P. aegyptiae BA1, Photorhabdus sp. LN2, NBAII HiPL 101, and NBAII Hb 105. Strains from clade P-II include P. bodei CN4 and LJ24-63, P. kayaii M-HU2, C-HU2, and HUG-39, P. kleinii S9-53 and S10-54, and Photorhabdus sp. CRCIAP01. Strains from clade P-III include P. laumondii TT01, HP88, and IL9. Strains from clade P-IV include P. asymbiotica ATCC 43949; P. australis subsp. australis DSM 17609, P. cinnerea DSM 19724, and P. heterorhabditis VMG. Strains from clade P-V include P. temperata J3, Meg1, and M1021, P. thracensis DSM 15199, P. khani NC19, and P. tasmaniensis DSM 22387. (B) X. nematophila strains include F1, ATCC 19061, K102 (CNCMI-4530), Anatoliense, Websteri, and C2-3. X. hominickii strains include ANU1 and DSM 17903. Strains from clade C-IV include Xenorhabdus sp. KK7.4 and KJ12.1, X. innexi HGB1681 and DSM 16336, X. stockiae DSM 17904, and X. cabanillassii 17905 and JM26. The oatA ortholog is totally absent from the strains of Xenorhabdus phylogenetic clades C-I and C-III, illustrated here by the strains X. bovienii CS03, X. doucetiae FRM16, and X. poinarii G6.
    Photorhabdus Asymbiotica Atcc 43949, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Images

    1) Product Images from "The Odilorhabdin Antibiotic Biosynthetic Cluster and Acetyltransferase Self-Resistance Locus Are Niche and Species Specific"

    Article Title: The Odilorhabdin Antibiotic Biosynthetic Cluster and Acetyltransferase Self-Resistance Locus Are Niche and Species Specific

    Journal: mBio

    doi: 10.1128/mbio.02826-21

    Genomic environment of the oatA gene in the Photorhabdus (A) and Xenorhabdus (B) genomes. Blue box, odl -BGC region; pink boxes, genomic regions framing the odl -BGC region encoding several enzymes, including OatA (the asterisk shows a highly shuffled subregion with a variable gene content according to the strain); gray boxes, core genome (different motifs indicate different regions of core genomes). GC content ({G or C}/{A, T, G, or C}) was calculated for a sliding window with a length of 25 nucleotides and plotted with SnapGene software (from Insightful Science). (A) Strains from clade P-I containing the oatA ortholog include P. luminescens subsp. luminescens DSM 3368, P. luminescens HIM3, P. namnanoensis PB45.5, and Photorhabdus sp. H1. Strains from the clade P-I which totally lack the oatA ortholog include P. aegyptiae BA1, Photorhabdus sp. LN2, NBAII HiPL 101, and NBAII Hb 105. Strains from clade P-II include P. bodei CN4 and LJ24-63, P. kayaii M-HU2, C-HU2, and HUG-39, P. kleinii S9-53 and S10-54, and Photorhabdus sp. CRCIAP01. Strains from clade P-III include P. laumondii TT01, HP88, and IL9. Strains from clade P-IV include P. asymbiotica ATCC 43949; P. australis subsp. australis DSM 17609, P. cinnerea DSM 19724, and P. heterorhabditis VMG. Strains from clade P-V include P. temperata J3, Meg1, and M1021, P. thracensis DSM 15199, P. khani NC19, and P. tasmaniensis DSM 22387. (B) X. nematophila strains include F1, ATCC 19061, K102 (CNCMI-4530), Anatoliense, Websteri, and C2-3. X. hominickii strains include ANU1 and DSM 17903. Strains from clade C-IV include Xenorhabdus sp. KK7.4 and KJ12.1, X. innexi HGB1681 and DSM 16336, X. stockiae DSM 17904, and X. cabanillassii 17905 and JM26. The oatA ortholog is totally absent from the strains of Xenorhabdus phylogenetic clades C-I and C-III, illustrated here by the strains X. bovienii CS03, X. doucetiae FRM16, and X. poinarii G6.
    Figure Legend Snippet: Genomic environment of the oatA gene in the Photorhabdus (A) and Xenorhabdus (B) genomes. Blue box, odl -BGC region; pink boxes, genomic regions framing the odl -BGC region encoding several enzymes, including OatA (the asterisk shows a highly shuffled subregion with a variable gene content according to the strain); gray boxes, core genome (different motifs indicate different regions of core genomes). GC content ({G or C}/{A, T, G, or C}) was calculated for a sliding window with a length of 25 nucleotides and plotted with SnapGene software (from Insightful Science). (A) Strains from clade P-I containing the oatA ortholog include P. luminescens subsp. luminescens DSM 3368, P. luminescens HIM3, P. namnanoensis PB45.5, and Photorhabdus sp. H1. Strains from the clade P-I which totally lack the oatA ortholog include P. aegyptiae BA1, Photorhabdus sp. LN2, NBAII HiPL 101, and NBAII Hb 105. Strains from clade P-II include P. bodei CN4 and LJ24-63, P. kayaii M-HU2, C-HU2, and HUG-39, P. kleinii S9-53 and S10-54, and Photorhabdus sp. CRCIAP01. Strains from clade P-III include P. laumondii TT01, HP88, and IL9. Strains from clade P-IV include P. asymbiotica ATCC 43949; P. australis subsp. australis DSM 17609, P. cinnerea DSM 19724, and P. heterorhabditis VMG. Strains from clade P-V include P. temperata J3, Meg1, and M1021, P. thracensis DSM 15199, P. khani NC19, and P. tasmaniensis DSM 22387. (B) X. nematophila strains include F1, ATCC 19061, K102 (CNCMI-4530), Anatoliense, Websteri, and C2-3. X. hominickii strains include ANU1 and DSM 17903. Strains from clade C-IV include Xenorhabdus sp. KK7.4 and KJ12.1, X. innexi HGB1681 and DSM 16336, X. stockiae DSM 17904, and X. cabanillassii 17905 and JM26. The oatA ortholog is totally absent from the strains of Xenorhabdus phylogenetic clades C-I and C-III, illustrated here by the strains X. bovienii CS03, X. doucetiae FRM16, and X. poinarii G6.

    Techniques Used: Software

    MICs of NOSO-95C against Xenorhabdus and Photorhabdus strains
    Figure Legend Snippet: MICs of NOSO-95C against Xenorhabdus and Photorhabdus strains

    Techniques Used:

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    • photorhabdus asymbiotica subsp asymbiotica atcc 43949  (ATCC)
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    ATCC photorhabdus asymbiotica subsp asymbiotica atcc 43949
    Analysis of nov genes located in ‘intergenic’ regions in P. fluorescens Pf0-1.
    Photorhabdus Asymbiotica Subsp Asymbiotica Atcc 43949, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    photorhabdus asymbiotica atcc 43949  (ATCC)
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    ATCC photorhabdus asymbiotica atcc 43949
    Short list of bacterial taxa associated with animals encoding proteins with the PF13402 domain.
    Photorhabdus Asymbiotica Atcc 43949, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    p asymbiotica atcc 43949  (ATCC)
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    ATCC p asymbiotica atcc 43949
    Classification of RGPs in the P. luminescens TT01, P. asymbiotica <t> ATCC43949, </t> X. nematophila ATCC19061 and X. bovienii SS-2004 genomes as a function of their genetic composition (the proportion of the modules belonging to a given class is indicated in parentheses)
    P Asymbiotica Atcc 43949, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    photorhabdus asymbiotica atcc 43950  (ATCC)
    94
    ATCC photorhabdus asymbiotica atcc 43950
    Classification of RGPs in the P. luminescens TT01, P. asymbiotica <t> ATCC43949, </t> X. nematophila ATCC19061 and X. bovienii SS-2004 genomes as a function of their genetic composition (the proportion of the modules belonging to a given class is indicated in parentheses)
    Photorhabdus Asymbiotica Atcc 43950, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Image Search Results


    Analysis of nov genes located in ‘intergenic’ regions in P. fluorescens Pf0-1.

    Journal: PLoS ONE

    Article Title: Proteomic Detection of Non-Annotated Protein-Coding Genes in Pseudomonas fluorescens Pf0-1

    doi: 10.1371/journal.pone.0008455

    Figure Lengend Snippet: Analysis of nov genes located in ‘intergenic’ regions in P. fluorescens Pf0-1.

    Article Snippet: 02 , GenemarkS , Best hit: Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949. Identities = 50/84 (59%), Positives = 67/84 (79%), Gaps = 1/84 (1%). , colicin-pyocin immunity protein.

    Techniques: Sequencing

    Short list of bacterial taxa associated with animals encoding proteins with the PF13402 domain.

    Journal: PLoS ONE

    Article Title: A Novel Extracellular Metallopeptidase Domain Shared by Animal Host-Associated Mutualistic and Pathogenic Microbes

    doi: 10.1371/journal.pone.0030287

    Figure Lengend Snippet: Short list of bacterial taxa associated with animals encoding proteins with the PF13402 domain.

    Article Snippet: Photorhabdus asymbiotica ATCC 43949 , IG , Human wound , 1 , Yes , − , −.

    Techniques:

    Classification of RGPs in the P. luminescens TT01, P. asymbiotica ATCC43949, X. nematophila ATCC19061 and X. bovienii SS-2004 genomes as a function of their genetic composition (the proportion of the modules belonging to a given class is indicated in parentheses)

    Journal: BMC Genomics

    Article Title: Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus

    doi: 10.1186/1471-2164-11-568

    Figure Lengend Snippet: Classification of RGPs in the P. luminescens TT01, P. asymbiotica ATCC43949, X. nematophila ATCC19061 and X. bovienii SS-2004 genomes as a function of their genetic composition (the proportion of the modules belonging to a given class is indicated in parentheses)

    Article Snippet: P. asymbiotica ATCC 43949 , 8 (8,5%) , 33 (36%) , 10 (11%) , 41 (45%).

    Techniques: