Structured Review

Illumina Inc mouse oligonucleotides
Mouse Oligonucleotides, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/mouse oligonucleotides/product/Illumina Inc
Average 86 stars, based on 1 article reviews
Price from $9.99 to $1999.99
mouse oligonucleotides - by Bioz Stars, 2020-04
86/100 stars

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Microarray:

Article Title: Genomic modeling of tumor onset and progression in a mouse model of aggressive human liver cancer
Article Snippet: A genome-wide set of mouse oligonucleotides obtained from Illumina (San Diego, CA) and printed at the Advanced Technology Center (NCI/NIH) was used in this study. .. MIAME compliant microarray data have been deposited to the GEO database ( ).

Centrifugation:

Article Title: Genomic modeling of tumor onset and progression in a mouse model of aggressive human liver cancer
Article Snippet: Total RNAs were purified using a CsCl gradient-density centrifugation method ( ). .. A genome-wide set of mouse oligonucleotides obtained from Illumina (San Diego, CA) and printed at the Advanced Technology Center (NCI/NIH) was used in this study.

Genome Wide:

Article Title: Genomic modeling of tumor onset and progression in a mouse model of aggressive human liver cancer
Article Snippet: .. A genome-wide set of mouse oligonucleotides obtained from Illumina (San Diego, CA) and printed at the Advanced Technology Center (NCI/NIH) was used in this study. ..

Purification:

Article Title: Genomic modeling of tumor onset and progression in a mouse model of aggressive human liver cancer
Article Snippet: Total RNAs were purified using a CsCl gradient-density centrifugation method ( ). .. A genome-wide set of mouse oligonucleotides obtained from Illumina (San Diego, CA) and printed at the Advanced Technology Center (NCI/NIH) was used in this study.

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  • 99
    Illumina Inc 16s rrna gene
    Hh infection induces IL-22 dependent dysbiosis (A) Quantification of Hh colonization density in the cecal content. n=9-11. (B) Chao and Shannon diversity indices from <t>16S</t> <t>rRNA</t> sequencing data obtained from fecal pellets of uninfected mice and Hh infected mice treated with control or anti-IL-22 antibody as indicated. (C) Relative abundance of indicated taxa from groups described in B. (D) Relative abundance of indicated taxa as determined by taxa specific 16s rRNA qPCR from groups described in B.
    16s Rrna Gene, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 1085 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/16s rrna gene/product/Illumina Inc
    Average 99 stars, based on 1085 article reviews
    Price from $9.99 to $1999.99
    16s rrna gene - by Bioz Stars, 2020-04
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    93
    Illumina Inc earth microbiome project primer set
    Early HMOS dietary intervention changes the alpha diversity and beta diversity of fecal <t>microbiota</t> of the non-diabetic and diabetic mice within each group at four collection points. ( A ) richness. ( B ) Shannon’s index. ( C ) Simpson’s index. ( D ) evenness. Alpha diversity indices data are represented as mean ± SEM, n = 17–20/ group, *p
    Earth Microbiome Project Primer Set, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 93/100, based on 2 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/earth microbiome project primer set/product/Illumina Inc
    Average 93 stars, based on 2 article reviews
    Price from $9.99 to $1999.99
    earth microbiome project primer set - by Bioz Stars, 2020-04
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    91
    Illumina Inc mouse ref v2 0 gene chip array
    Cosmc controls diverse host pathways that regulate the microbiota and inflammation in the distal colon. Epithelial cells were purified from the CR or SI from KO and WT mice, and gene expression was performed on Illumina mouse ref 8 <t>v2.0</t> expression chip.
    Mouse Ref V2 0 Gene Chip Array, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 91/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/mouse ref v2 0 gene chip array/product/Illumina Inc
    Average 91 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
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    86
    Illumina Inc ldlrko mice
    Altered plasma lipoprotein profile in <t>FMO3</t> ASO-treated <t>LDLRKO</t> mice fed a Western diet. FPLC was used to fractionate pooled plasma samples (five individual samples per pool) from LDLRKO mice treated with the control ASO or the FMO3 ASO and fed the Western diet. TG (A), TC (B), and phosphatidylcholine (C) concentrations of each FPLC fraction were measured and shown.
    Ldlrko Mice, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Average 86 stars, based on 1 article reviews
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    ldlrko mice - by Bioz Stars, 2020-04
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    Image Search Results


    Hh infection induces IL-22 dependent dysbiosis (A) Quantification of Hh colonization density in the cecal content. n=9-11. (B) Chao and Shannon diversity indices from 16S rRNA sequencing data obtained from fecal pellets of uninfected mice and Hh infected mice treated with control or anti-IL-22 antibody as indicated. (C) Relative abundance of indicated taxa from groups described in B. (D) Relative abundance of indicated taxa as determined by taxa specific 16s rRNA qPCR from groups described in B.

    Journal: Mucosal immunology

    Article Title: Interleukin-22 drives nitric oxide-dependent DNA damage and dysplasia in a murine model of colitis-associated cancer

    doi: 10.1038/mi.2017.9

    Figure Lengend Snippet: Hh infection induces IL-22 dependent dysbiosis (A) Quantification of Hh colonization density in the cecal content. n=9-11. (B) Chao and Shannon diversity indices from 16S rRNA sequencing data obtained from fecal pellets of uninfected mice and Hh infected mice treated with control or anti-IL-22 antibody as indicated. (C) Relative abundance of indicated taxa from groups described in B. (D) Relative abundance of indicated taxa as determined by taxa specific 16s rRNA qPCR from groups described in B.

    Article Snippet: Amplicons were generated using oligonucleotide primers that target approximately 300 bp of the V4 variable region of the 16S rRNA gene (primers 515F and 806R) and also were barcoded and pooled to construct the sequencing library, followed by sequencing with an Illumina MiSeq instrument to generate paired-end 150×150 reads.

    Techniques: Infection, Sequencing, Mouse Assay, Real-time Polymerase Chain Reaction

    Early HMOS dietary intervention changes the alpha diversity and beta diversity of fecal microbiota of the non-diabetic and diabetic mice within each group at four collection points. ( A ) richness. ( B ) Shannon’s index. ( C ) Simpson’s index. ( D ) evenness. Alpha diversity indices data are represented as mean ± SEM, n = 17–20/ group, *p

    Journal: Scientific Reports

    Article Title: Human milk oligosaccharides protect against the development of autoimmune diabetes in NOD-mice

    doi: 10.1038/s41598-018-22052-y

    Figure Lengend Snippet: Early HMOS dietary intervention changes the alpha diversity and beta diversity of fecal microbiota of the non-diabetic and diabetic mice within each group at four collection points. ( A ) richness. ( B ) Shannon’s index. ( C ) Simpson’s index. ( D ) evenness. Alpha diversity indices data are represented as mean ± SEM, n = 17–20/ group, *p

    Article Snippet: Total DNA was extracted from NOD-mice fecal samples (FastDNA bead-beating Spin Kit for Soil, MP Biomedicals, Solon, OH), amplified the V4 variable region of the microbial 16 S rRNA gene (Earth Microbiome Project primer set, adapted for the Illumina platform) , and sequenced on an Illumina MiSeq (2 × 151 bp reads) at Argonne National Laboratory.

    Techniques: Mouse Assay

    Early HMOS dietary intervention alters fecal microbiota composition over time. Fecal samples at Wk4 (baseline), Wk9 (start intervention), Wk14 (post-intervention) and Wk30 (endpoint) were analyzed using 16 S rRNA. ( A ) Phylum level pie charts, organized by weekly collection time points, significance indicated either by: ( # )False Discovery Rate (FDR) p

    Journal: Scientific Reports

    Article Title: Human milk oligosaccharides protect against the development of autoimmune diabetes in NOD-mice

    doi: 10.1038/s41598-018-22052-y

    Figure Lengend Snippet: Early HMOS dietary intervention alters fecal microbiota composition over time. Fecal samples at Wk4 (baseline), Wk9 (start intervention), Wk14 (post-intervention) and Wk30 (endpoint) were analyzed using 16 S rRNA. ( A ) Phylum level pie charts, organized by weekly collection time points, significance indicated either by: ( # )False Discovery Rate (FDR) p

    Article Snippet: Total DNA was extracted from NOD-mice fecal samples (FastDNA bead-beating Spin Kit for Soil, MP Biomedicals, Solon, OH), amplified the V4 variable region of the microbial 16 S rRNA gene (Earth Microbiome Project primer set, adapted for the Illumina platform) , and sequenced on an Illumina MiSeq (2 × 151 bp reads) at Argonne National Laboratory.

    Techniques:

    Cosmc controls diverse host pathways that regulate the microbiota and inflammation in the distal colon. Epithelial cells were purified from the CR or SI from KO and WT mice, and gene expression was performed on Illumina mouse ref 8 v2.0 expression chip.

    Journal: Proceedings of the National Academy of Sciences of the United States of America

    Article Title: Cosmc is an X-linked inflammatory bowel disease risk gene that spatially regulates gut microbiota and contributes to sex-specific risk

    doi: 10.1073/pnas.1612158114

    Figure Lengend Snippet: Cosmc controls diverse host pathways that regulate the microbiota and inflammation in the distal colon. Epithelial cells were purified from the CR or SI from KO and WT mice, and gene expression was performed on Illumina mouse ref 8 v2.0 expression chip.

    Article Snippet: To identify host pathways that may contribute to regional changes in the microbiota, we isolated colorectal (CR) and small intestine (SI) epithelia from ∼2-mo-old male WT and KO mice, before clinical inflammation and at the same age as 16S sequencing, and analyzed transcripts with Illumina Mouse-Ref v2.0 gene chip array ( n = 4 mice/group per region) ( ).

    Techniques: Purification, Mouse Assay, Expressing, Chromatin Immunoprecipitation

    Altered plasma lipoprotein profile in FMO3 ASO-treated LDLRKO mice fed a Western diet. FPLC was used to fractionate pooled plasma samples (five individual samples per pool) from LDLRKO mice treated with the control ASO or the FMO3 ASO and fed the Western diet. TG (A), TC (B), and phosphatidylcholine (C) concentrations of each FPLC fraction were measured and shown.

    Journal: Journal of Lipid Research

    Article Title: Flavin containing monooxygenase 3 exerts broad effects on glucose and lipid metabolism and atherosclerosis [S]

    doi: 10.1194/jlr.M051680

    Figure Lengend Snippet: Altered plasma lipoprotein profile in FMO3 ASO-treated LDLRKO mice fed a Western diet. FPLC was used to fractionate pooled plasma samples (five individual samples per pool) from LDLRKO mice treated with the control ASO or the FMO3 ASO and fed the Western diet. TG (A), TC (B), and phosphatidylcholine (C) concentrations of each FPLC fraction were measured and shown.

    Article Snippet: Total RNA samples from the livers of LDLRKO mice treated with control or FMO3 ASO (n = 4 for each group) were prepared for use in Illumina MouseRef-8 v2.0 Expression BeadChips according to manufacturer’s recommendations at the Neuroscience Genomics Core at UCLA.

    Techniques: Allele-specific Oligonucleotide, Mouse Assay, Western Blot, Fast Protein Liquid Chromatography

    FMO3 knockdown in LDLRKO mice leads to decreased hepatic FMO3 protein and activity levels, altered plasma TMAO and TMA levels, and decreased adiposity. A: Liver FMO3 protein levels of mice treated with saline (S), control ASO (control), or FMO3 ASO (FMO3) were determined by immunoblotting. B: Liver FMO activity (n = 6 for each group) was determined using TMA as the substrate. Plasma TMAO (C) and TMA (D) levels were determined by mass spectrometry (n = 12 for each group). Body weight (E) and percent weight of four fat pads (gonadal, retroperitoneal, subcutaneous, and mesentery fat pads) (F) were normalized by the body weight (n = 12 for each group). Student’s t -test: # P

    Journal: Journal of Lipid Research

    Article Title: Flavin containing monooxygenase 3 exerts broad effects on glucose and lipid metabolism and atherosclerosis [S]

    doi: 10.1194/jlr.M051680

    Figure Lengend Snippet: FMO3 knockdown in LDLRKO mice leads to decreased hepatic FMO3 protein and activity levels, altered plasma TMAO and TMA levels, and decreased adiposity. A: Liver FMO3 protein levels of mice treated with saline (S), control ASO (control), or FMO3 ASO (FMO3) were determined by immunoblotting. B: Liver FMO activity (n = 6 for each group) was determined using TMA as the substrate. Plasma TMAO (C) and TMA (D) levels were determined by mass spectrometry (n = 12 for each group). Body weight (E) and percent weight of four fat pads (gonadal, retroperitoneal, subcutaneous, and mesentery fat pads) (F) were normalized by the body weight (n = 12 for each group). Student’s t -test: # P

    Article Snippet: Total RNA samples from the livers of LDLRKO mice treated with control or FMO3 ASO (n = 4 for each group) were prepared for use in Illumina MouseRef-8 v2.0 Expression BeadChips according to manufacturer’s recommendations at the Neuroscience Genomics Core at UCLA.

    Techniques: Mouse Assay, Activity Assay, Allele-specific Oligonucleotide, Mass Spectrometry