l garvieae strains atcc 49156  (ATCC)


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    Name:
    Lactococcus garvieae YT 3 JCM 8735
    Description:

    Catalog Number:
    49156
    Price:
    None
    Applications:
    Characterization
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    Structured Review

    ATCC l garvieae strains atcc 49156

    https://www.bioz.com/result/l garvieae strains atcc 49156/product/ATCC
    Average 93 stars, based on 2 article reviews
    Price from $9.99 to $1999.99
    l garvieae strains atcc 49156 - by Bioz Stars, 2020-08
    93/100 stars

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    Related Articles

    Multiplex Assay:

    Article Title: Development of a multiplex PCR assay to detect Edwardsiella tarda, Streptococcus parauberis, and Streptococcus iniae in olive flounder (Paralichthys olivaceus)
    Article Snippet: .. Specificity of the multiplex PCR was evaluated using genomic DNA from ten phylogenetically related bacterial species and other fish-specific pathogenic bacteria such as Lactococcus garivieae (ATCC 49156), Aeromonas (A. ) hydrophila (ATCC 49140), A. salmonicida (ATCC 14174), Vibrio (V. ) alginolyticus (ATCC 17749), V. anguillarum (ATCC 19264), E. hoshinae (ATCC 35051), and E. ictaluri (ATCC 33202). .. As expected, the target genes of E. tarda , S. parauberis , and S. iniae were amplified while no products were generated for any of the other related bacteria except for E. ictaluri ( ).

    Isolation:

    Article Title: Complete Genome Sequence and Comparative Analysis of the Fish Pathogen Lactococcus garvieae
    Article Snippet: .. The corresponding capsule gene cluster in avirulent strain L. garvieae ATCC 49156 might have been lost during its subculturing, because ATCC 49156 was originally isolated from diseased yellowtail and could have been virulent . ..

    Article Title: Complete Genome Sequence and Comparative Analysis of the Fish Pathogen Lactococcus garvieae
    Article Snippet: .. L. garvieae ATCC 49156 was originally isolated in 1974 from diseased yellowtail as E. seriolicida ATCC 49156T , has undergone phenotypic changes during its descent from the ancestral strain, and now is non-pathogenic to yellowtails . .. L. garvieae Lg2, isolated in 2002 from diseased yellowtail, is highly virulent and α-haemolytic .

    Subculturing Assay:

    Article Title: Complete Genome Sequence and Comparative Analysis of the Fish Pathogen Lactococcus garvieae
    Article Snippet: .. The corresponding capsule gene cluster in avirulent strain L. garvieae ATCC 49156 might have been lost during its subculturing, because ATCC 49156 was originally isolated from diseased yellowtail and could have been virulent . ..

    Sequencing:

    Article Title: Complete Genome Sequence and Comparative Analysis of the Fish Pathogen Lactococcus garvieae
    Article Snippet: .. The comparative analysis of genomes of a virulent strain Lg2 and a non-virulent strain ATCC 49156 of L. garvieae revealed that the two strains shared a high degree of sequence identity, but Lg2 had a 16.5-kb capsule gene cluster that is absent in ATCC 49156. ..

    Article Title: Complete Genome Sequence and Comparative Analysis of the Fish Pathogen Lactococcus garvieae
    Article Snippet: .. The genome sequence data of L. garvieae ATCC 49156 and Lg2 have been deposited in DDBJ/GenBank/EMBL under accession numbers AP009332 (ATCC 49156) and AP009333 (Lg2). ..

    Polymerase Chain Reaction:

    Article Title: Development of a multiplex PCR assay to detect Edwardsiella tarda, Streptococcus parauberis, and Streptococcus iniae in olive flounder (Paralichthys olivaceus)
    Article Snippet: .. Specificity of the multiplex PCR was evaluated using genomic DNA from ten phylogenetically related bacterial species and other fish-specific pathogenic bacteria such as Lactococcus garivieae (ATCC 49156), Aeromonas (A. ) hydrophila (ATCC 49140), A. salmonicida (ATCC 14174), Vibrio (V. ) alginolyticus (ATCC 17749), V. anguillarum (ATCC 19264), E. hoshinae (ATCC 35051), and E. ictaluri (ATCC 33202). .. As expected, the target genes of E. tarda , S. parauberis , and S. iniae were amplified while no products were generated for any of the other related bacteria except for E. ictaluri ( ).

    Fluorescence In Situ Hybridization:

    Article Title: Development of a multiplex PCR assay to detect Edwardsiella tarda, Streptococcus parauberis, and Streptococcus iniae in olive flounder (Paralichthys olivaceus)
    Article Snippet: .. Specificity of the multiplex PCR was evaluated using genomic DNA from ten phylogenetically related bacterial species and other fish-specific pathogenic bacteria such as Lactococcus garivieae (ATCC 49156), Aeromonas (A. ) hydrophila (ATCC 49140), A. salmonicida (ATCC 14174), Vibrio (V. ) alginolyticus (ATCC 17749), V. anguillarum (ATCC 19264), E. hoshinae (ATCC 35051), and E. ictaluri (ATCC 33202). .. As expected, the target genes of E. tarda , S. parauberis , and S. iniae were amplified while no products were generated for any of the other related bacteria except for E. ictaluri ( ).

    Derivative Assay:

    Article Title: Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species
    Article Snippet: .. The protein sequences derived from this MAG, as well as the protein sequences from the genomes of 17 O. oeni strains, two O. kitaharae strains, one O. alcoholitolerans strain, and from Lactococcus garvieae ATCC 49156, the latter serving as an outgroup, were used in the analysis with OrthoFinder 1.1.10, making use of DIAMOND as alignment tool ( ; ). .. The resulting set of 326 single-copy core protein sequences was subjected to a multiple sequence alignment using MUSCLE ( ).

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  • 93
    ATCC avirulent strain l garvieae atcc 49156
    The capsule gene cluster arrangement in L. <t>garvieae</t> Lg2 and L. lactis strains. Genes and their orientations are depicted with arrows using the following colours: orange, conserved genes in the capsule gene cluster; blue, transposase genes; white, other genes in the capsule gene cluster. Gray bars indicate orthologous regions. ( A ) Comparisons of the genomic location of the capsule gene cluster in L. garvieae Lg2 and the corresponding region in L. garvieae ATCC 49156. ( B ) The capsule gene cluster arrangement in L. lactis strains and the human gut bacteria (Subjects 2 and 17). Genes and their orientations are depicted with arrows using the same colour coding as described in (A). Accession numbers of the sequences used in this figure are as follows: L. lactis subsp. cremoris NIZO B40, AF036485; L. lactis subsp. cremoris HO2, AF142639; L. lactis subsp. cremoris SMQ-461, AY741550; Subject 2, AB612914; Subject 17, AB612915.
    Avirulent Strain L Garvieae Atcc 49156, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 6 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/avirulent strain l garvieae atcc 49156/product/ATCC
    Average 93 stars, based on 6 article reviews
    Price from $9.99 to $1999.99
    avirulent strain l garvieae atcc 49156 - by Bioz Stars, 2020-08
    93/100 stars
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    The capsule gene cluster arrangement in L. garvieae Lg2 and L. lactis strains. Genes and their orientations are depicted with arrows using the following colours: orange, conserved genes in the capsule gene cluster; blue, transposase genes; white, other genes in the capsule gene cluster. Gray bars indicate orthologous regions. ( A ) Comparisons of the genomic location of the capsule gene cluster in L. garvieae Lg2 and the corresponding region in L. garvieae ATCC 49156. ( B ) The capsule gene cluster arrangement in L. lactis strains and the human gut bacteria (Subjects 2 and 17). Genes and their orientations are depicted with arrows using the same colour coding as described in (A). Accession numbers of the sequences used in this figure are as follows: L. lactis subsp. cremoris NIZO B40, AF036485; L. lactis subsp. cremoris HO2, AF142639; L. lactis subsp. cremoris SMQ-461, AY741550; Subject 2, AB612914; Subject 17, AB612915.

    Journal: PLoS ONE

    Article Title: Complete Genome Sequence and Comparative Analysis of the Fish Pathogen Lactococcus garvieae

    doi: 10.1371/journal.pone.0023184

    Figure Lengend Snippet: The capsule gene cluster arrangement in L. garvieae Lg2 and L. lactis strains. Genes and their orientations are depicted with arrows using the following colours: orange, conserved genes in the capsule gene cluster; blue, transposase genes; white, other genes in the capsule gene cluster. Gray bars indicate orthologous regions. ( A ) Comparisons of the genomic location of the capsule gene cluster in L. garvieae Lg2 and the corresponding region in L. garvieae ATCC 49156. ( B ) The capsule gene cluster arrangement in L. lactis strains and the human gut bacteria (Subjects 2 and 17). Genes and their orientations are depicted with arrows using the same colour coding as described in (A). Accession numbers of the sequences used in this figure are as follows: L. lactis subsp. cremoris NIZO B40, AF036485; L. lactis subsp. cremoris HO2, AF142639; L. lactis subsp. cremoris SMQ-461, AY741550; Subject 2, AB612914; Subject 17, AB612915.

    Article Snippet: The corresponding capsule gene cluster in avirulent strain L. garvieae ATCC 49156 might have been lost during its subculturing, because ATCC 49156 was originally isolated from diseased yellowtail and could have been virulent .

    Techniques:

    Predicted metabolic pathways in L. garvieae ATCC 49156. Red arrows indicate pathways that are not identified in L. garvieae but identified in L. lactis subsp. lactis IL1403.

    Journal: PLoS ONE

    Article Title: Complete Genome Sequence and Comparative Analysis of the Fish Pathogen Lactococcus garvieae

    doi: 10.1371/journal.pone.0023184

    Figure Lengend Snippet: Predicted metabolic pathways in L. garvieae ATCC 49156. Red arrows indicate pathways that are not identified in L. garvieae but identified in L. lactis subsp. lactis IL1403.

    Article Snippet: The corresponding capsule gene cluster in avirulent strain L. garvieae ATCC 49156 might have been lost during its subculturing, because ATCC 49156 was originally isolated from diseased yellowtail and could have been virulent .

    Techniques:

    Binding sites of the capsule-specific primers in the L. garvieae genomes. The predicted binding sites of the capsule-specific primers in L. garvieae strains and the putative PCR products sizes were shown.

    Journal: International Journal of Microbiology

    Article Title: Comparative Genomic Analysis of Lactococcus garvieae Strains Isolated from Different Sources Reveals Candidate Virulence Genes

    doi: 10.1155/2012/728276

    Figure Lengend Snippet: Binding sites of the capsule-specific primers in the L. garvieae genomes. The predicted binding sites of the capsule-specific primers in L. garvieae strains and the putative PCR products sizes were shown.

    Article Snippet: The general features of genomes of L. garvieae strains (ATCC 49156, Lg2, UNIUD074, 8831, and 21881) were summarized in .

    Techniques: Binding Assay, Polymerase Chain Reaction

    Expression of the capsule gene cluster in L. garvieae strains isolated from fish and sprout. The capsule gene clusters in L. garvieae strains were amplified by PCR, and the PCR products and marker ( λ -EcoT14 I digest) were subjected to agarose gel electrophoresis. The gel was stained with ethidium bromide.

    Journal: International Journal of Microbiology

    Article Title: Comparative Genomic Analysis of Lactococcus garvieae Strains Isolated from Different Sources Reveals Candidate Virulence Genes

    doi: 10.1155/2012/728276

    Figure Lengend Snippet: Expression of the capsule gene cluster in L. garvieae strains isolated from fish and sprout. The capsule gene clusters in L. garvieae strains were amplified by PCR, and the PCR products and marker ( λ -EcoT14 I digest) were subjected to agarose gel electrophoresis. The gel was stained with ethidium bromide.

    Article Snippet: The general features of genomes of L. garvieae strains (ATCC 49156, Lg2, UNIUD074, 8831, and 21881) were summarized in .

    Techniques: Expressing, Isolation, Fluorescence In Situ Hybridization, Amplification, Polymerase Chain Reaction, Marker, Agarose Gel Electrophoresis, Staining

    Venn diagram comparing the gene inventories of four strains of L. garvieae . The numbers of shared and unique genes are shown.

    Journal: International Journal of Microbiology

    Article Title: Comparative Genomic Analysis of Lactococcus garvieae Strains Isolated from Different Sources Reveals Candidate Virulence Genes

    doi: 10.1155/2012/728276

    Figure Lengend Snippet: Venn diagram comparing the gene inventories of four strains of L. garvieae . The numbers of shared and unique genes are shown.

    Article Snippet: The general features of genomes of L. garvieae strains (ATCC 49156, Lg2, UNIUD074, 8831, and 21881) were summarized in .

    Techniques:

    Comparisons of the genomic location of the capsule gene cluster in L. garvieae Lg2 and the corresponding location of other L. garvieae strains. Genes and their orientations are depicted with arrows using the following colors: red, genes conserved in the capsule gene cluster of various L. lactis strains; blue, transposase genes; white, other genes in the capsule gene cluster. Gray bars indicate orthologous regions.

    Journal: International Journal of Microbiology

    Article Title: Comparative Genomic Analysis of Lactococcus garvieae Strains Isolated from Different Sources Reveals Candidate Virulence Genes

    doi: 10.1155/2012/728276

    Figure Lengend Snippet: Comparisons of the genomic location of the capsule gene cluster in L. garvieae Lg2 and the corresponding location of other L. garvieae strains. Genes and their orientations are depicted with arrows using the following colors: red, genes conserved in the capsule gene cluster of various L. lactis strains; blue, transposase genes; white, other genes in the capsule gene cluster. Gray bars indicate orthologous regions.

    Article Snippet: The general features of genomes of L. garvieae strains (ATCC 49156, Lg2, UNIUD074, 8831, and 21881) were summarized in .

    Techniques: