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Illumina Inc illumina caninehd beadchip
Principal components (PC) plots comparing the first and second eigenvalues for the actual ( a ) vs. the imputed ( b ) genotypes of 175 Standard Poodles, 46 Boxers, and 47 Great Danes. Panel a shows PC data derived from actual genotype calls at 124,595 sites using the <t>Illumina</t> Canine HD <t>BeadChip.</t> Panel b shows PC data derived from imputed genotype calls at 4,885,283 sites using a reference panel of SNPs obtained from whole genome sequencing of 83 dogs across 15 different breeds. Imputation of the data in Panel b was performed using Beagle as described in the manuscript text. Scree plots , respectively
Illumina Caninehd Beadchip, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 40 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/illumina caninehd beadchip/product/Illumina Inc
Average 99 stars, based on 40 article reviews
Price from $9.99 to $1999.99
illumina caninehd beadchip - by Bioz Stars, 2022-09
99/100 stars

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1) Product Images from "Genotype imputation in the domestic dog"

Article Title: Genotype imputation in the domestic dog

Journal: Mammalian genome : official journal of the International Mammalian Genome Society

doi: 10.1007/s00335-016-9636-9

Principal components (PC) plots comparing the first and second eigenvalues for the actual ( a ) vs. the imputed ( b ) genotypes of 175 Standard Poodles, 46 Boxers, and 47 Great Danes. Panel a shows PC data derived from actual genotype calls at 124,595 sites using the Illumina Canine HD BeadChip. Panel b shows PC data derived from imputed genotype calls at 4,885,283 sites using a reference panel of SNPs obtained from whole genome sequencing of 83 dogs across 15 different breeds. Imputation of the data in Panel b was performed using Beagle as described in the manuscript text. Scree plots , respectively
Figure Legend Snippet: Principal components (PC) plots comparing the first and second eigenvalues for the actual ( a ) vs. the imputed ( b ) genotypes of 175 Standard Poodles, 46 Boxers, and 47 Great Danes. Panel a shows PC data derived from actual genotype calls at 124,595 sites using the Illumina Canine HD BeadChip. Panel b shows PC data derived from imputed genotype calls at 4,885,283 sites using a reference panel of SNPs obtained from whole genome sequencing of 83 dogs across 15 different breeds. Imputation of the data in Panel b was performed using Beagle as described in the manuscript text. Scree plots , respectively

Techniques Used: Derivative Assay, Sequencing

2) Product Images from "Genotype imputation in the domestic dog"

Article Title: Genotype imputation in the domestic dog

Journal: Mammalian genome : official journal of the International Mammalian Genome Society

doi: 10.1007/s00335-016-9636-9

Principal components (PC) plots comparing the first and second eigenvalues for the actual ( a ) vs. the imputed ( b ) genotypes of 175 Standard Poodles, 46 Boxers, and 47 Great Danes. Panel a shows PC data derived from actual genotype calls at 124,595 sites using the Illumina Canine HD BeadChip. Panel b shows PC data derived from imputed genotype calls at 4,885,283 sites using a reference panel of SNPs obtained from whole genome sequencing of 83 dogs across 15 different breeds. Imputation of the data in Panel b was performed using Beagle as described in the manuscript text. Scree plots , respectively
Figure Legend Snippet: Principal components (PC) plots comparing the first and second eigenvalues for the actual ( a ) vs. the imputed ( b ) genotypes of 175 Standard Poodles, 46 Boxers, and 47 Great Danes. Panel a shows PC data derived from actual genotype calls at 124,595 sites using the Illumina Canine HD BeadChip. Panel b shows PC data derived from imputed genotype calls at 4,885,283 sites using a reference panel of SNPs obtained from whole genome sequencing of 83 dogs across 15 different breeds. Imputation of the data in Panel b was performed using Beagle as described in the manuscript text. Scree plots , respectively

Techniques Used: Derivative Assay, Sequencing

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    Illumina Inc canine hd beadchip
    Principal components (PC) plots comparing the first and second eigenvalues for the actual ( a ) vs. the imputed ( b ) genotypes of 175 Standard Poodles, 46 Boxers, and 47 Great Danes. Panel a shows PC data derived from actual genotype calls at 124,595 sites using the Illumina Canine HD <t>BeadChip.</t> Panel b shows PC data derived from imputed genotype calls at 4,885,283 sites using a reference panel of SNPs obtained from whole genome sequencing of 83 dogs across 15 different breeds. Imputation of the data in Panel b was performed using Beagle as described in the manuscript text. Scree plots , respectively
    Canine Hd Beadchip, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/canine hd beadchip/product/Illumina Inc
    Average 99 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    canine hd beadchip - by Bioz Stars, 2022-09
    99/100 stars
      Buy from Supplier

    86
    Illumina Inc caninehd snp beadchip array
    ( a ) Inbreeding coefficient of affected and unaffected dogs based on <t>SNP</t> chip genotype data. ( b ) PCA plot. First and second components are plotted for 28 affected and 36 unaffected GLPs used in the GWAS analysis. Most affected dogs are clustered apart from unaffected dogs, indicating clear population stratification. ( c ) Manhattan plot and autozygosity of ROH segments in affected and unaffected GLPs in the region between 1–10 Mb on chr17. The red dashed line in the Manhattan plot denotes the Bonferroni corrected significance threshold. ( d ) Genotypes of the variants between 0 and 5 Mb on chromosome 17 identified by WGS from 22 dogs. Colors blue, green, red, and black denote homozygous for major allele, heterozygous, homozygous for minor allele, and missing genotype, respectively.
    Caninehd Snp Beadchip Array, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/caninehd snp beadchip array/product/Illumina Inc
    Average 86 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    caninehd snp beadchip array - by Bioz Stars, 2022-09
    86/100 stars
      Buy from Supplier

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    Principal components (PC) plots comparing the first and second eigenvalues for the actual ( a ) vs. the imputed ( b ) genotypes of 175 Standard Poodles, 46 Boxers, and 47 Great Danes. Panel a shows PC data derived from actual genotype calls at 124,595 sites using the Illumina Canine HD BeadChip. Panel b shows PC data derived from imputed genotype calls at 4,885,283 sites using a reference panel of SNPs obtained from whole genome sequencing of 83 dogs across 15 different breeds. Imputation of the data in Panel b was performed using Beagle as described in the manuscript text. Scree plots , respectively

    Journal: Mammalian genome : official journal of the International Mammalian Genome Society

    Article Title: Genotype imputation in the domestic dog

    doi: 10.1007/s00335-016-9636-9

    Figure Lengend Snippet: Principal components (PC) plots comparing the first and second eigenvalues for the actual ( a ) vs. the imputed ( b ) genotypes of 175 Standard Poodles, 46 Boxers, and 47 Great Danes. Panel a shows PC data derived from actual genotype calls at 124,595 sites using the Illumina Canine HD BeadChip. Panel b shows PC data derived from imputed genotype calls at 4,885,283 sites using a reference panel of SNPs obtained from whole genome sequencing of 83 dogs across 15 different breeds. Imputation of the data in Panel b was performed using Beagle as described in the manuscript text. Scree plots , respectively

    Article Snippet: Approximately 0.4 μg of DNA was submitted to Neogen/GeneSeek (Lincoln, NE) for processing and genotyping using the Illumina Canine HD BeadChip.

    Techniques: Derivative Assay, Sequencing

    ( a ) Inbreeding coefficient of affected and unaffected dogs based on SNP chip genotype data. ( b ) PCA plot. First and second components are plotted for 28 affected and 36 unaffected GLPs used in the GWAS analysis. Most affected dogs are clustered apart from unaffected dogs, indicating clear population stratification. ( c ) Manhattan plot and autozygosity of ROH segments in affected and unaffected GLPs in the region between 1–10 Mb on chr17. The red dashed line in the Manhattan plot denotes the Bonferroni corrected significance threshold. ( d ) Genotypes of the variants between 0 and 5 Mb on chromosome 17 identified by WGS from 22 dogs. Colors blue, green, red, and black denote homozygous for major allele, heterozygous, homozygous for minor allele, and missing genotype, respectively.

    Journal: Genes

    Article Title: Deleterious Mutations in the TPO Gene Associated with Familial Thyroid Follicular Cell Carcinoma in Dutch German Longhaired Pointers

    doi: 10.3390/genes12070997

    Figure Lengend Snippet: ( a ) Inbreeding coefficient of affected and unaffected dogs based on SNP chip genotype data. ( b ) PCA plot. First and second components are plotted for 28 affected and 36 unaffected GLPs used in the GWAS analysis. Most affected dogs are clustered apart from unaffected dogs, indicating clear population stratification. ( c ) Manhattan plot and autozygosity of ROH segments in affected and unaffected GLPs in the region between 1–10 Mb on chr17. The red dashed line in the Manhattan plot denotes the Bonferroni corrected significance threshold. ( d ) Genotypes of the variants between 0 and 5 Mb on chromosome 17 identified by WGS from 22 dogs. Colors blue, green, red, and black denote homozygous for major allele, heterozygous, homozygous for minor allele, and missing genotype, respectively.

    Article Snippet: Forty-three of the dogs were genotyped using the 170 k canineHD SNP beadchip array (Illumina Inc., San Diego, CA, USA).

    Techniques: Chromatin Immunoprecipitation, GWAS