rabbit anti gfp  (Cell Signaling Technology Inc)


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    Cell Signaling Technology Inc rabbit anti gfp
    Rabbit Anti Gfp, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/rabbit anti gfp/product/Cell Signaling Technology Inc
    Average 86 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    rabbit anti gfp - by Bioz Stars, 2023-03
    86/100 stars

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    antibodies against gfp  (Cell Signaling Technology Inc)


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    Cell Signaling Technology Inc antibodies against gfp
    ( A ) Western blot of Triton-soluble lysate (left lanes) and YFP-PKCβII immunoprecipitated from COS7 cells using <t>GFP-Trap</t> ® Agarose. Cells were pre-treated with 20 μM MG-132 for 3 hours followed by 30 min of 200 nM PDBu treatment prior to lysis. Blots were probed with <t>indicated</t> <t>antibodies.</t> ( B ) Quantification of PDBu-induced ubiquitination of immunoprecipitated PKCβII. Relative ubiquitination was determined (Ubiquitin / PKC) for immunoprecipitated samples and each condition was normalized to DMSO-treated control (1.0) to determine fold-increase in ubiquitination after PDBu stimulation. Data represent mean ± SEM from four independent experiments. ns = not significant, **** P < 0.0001 by two-way ANOVA and Šídák’s multiple comparisons test.
    Antibodies Against Gfp, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/antibodies against gfp/product/Cell Signaling Technology Inc
    Average 86 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    antibodies against gfp - by Bioz Stars, 2023-03
    86/100 stars

    Images

    1) Product Images from "Single-residue mutation in protein kinase C toggles between cancer and neurodegeneration"

    Article Title: Single-residue mutation in protein kinase C toggles between cancer and neurodegeneration

    Journal: bioRxiv

    doi: 10.1101/2023.03.16.532226

    ( A ) Western blot of Triton-soluble lysate (left lanes) and YFP-PKCβII immunoprecipitated from COS7 cells using GFP-Trap ® Agarose. Cells were pre-treated with 20 μM MG-132 for 3 hours followed by 30 min of 200 nM PDBu treatment prior to lysis. Blots were probed with indicated antibodies. ( B ) Quantification of PDBu-induced ubiquitination of immunoprecipitated PKCβII. Relative ubiquitination was determined (Ubiquitin / PKC) for immunoprecipitated samples and each condition was normalized to DMSO-treated control (1.0) to determine fold-increase in ubiquitination after PDBu stimulation. Data represent mean ± SEM from four independent experiments. ns = not significant, **** P < 0.0001 by two-way ANOVA and Šídák’s multiple comparisons test.
    Figure Legend Snippet: ( A ) Western blot of Triton-soluble lysate (left lanes) and YFP-PKCβII immunoprecipitated from COS7 cells using GFP-Trap ® Agarose. Cells were pre-treated with 20 μM MG-132 for 3 hours followed by 30 min of 200 nM PDBu treatment prior to lysis. Blots were probed with indicated antibodies. ( B ) Quantification of PDBu-induced ubiquitination of immunoprecipitated PKCβII. Relative ubiquitination was determined (Ubiquitin / PKC) for immunoprecipitated samples and each condition was normalized to DMSO-treated control (1.0) to determine fold-increase in ubiquitination after PDBu stimulation. Data represent mean ± SEM from four independent experiments. ns = not significant, **** P < 0.0001 by two-way ANOVA and Šídák’s multiple comparisons test.

    Techniques Used: Western Blot, Immunoprecipitation, Lysis

    anti gfp  (Cell Signaling Technology Inc)


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    Cell Signaling Technology Inc anti gfp
    ( A ) IP of anti-HA with cell lysate from 293T cells transfected with HA-Plek2, followed by Western blot assays of indicated proteins. ( B ) Western blotting assays of indicated proteins from Cos-7 cells transfected with HA-Plek2. ( C ) Quantitative PCR analysis of AKT from Cos-7 cells transfected with HA-Plek2. ( D ) Western blotting assays of indicated proteins from HEL cells transfected with Flag-Plek2. ( E <t>)</t> <t>GST</t> pull-down assay using GST or GST-Plek2 with a recombinant Akt. Akt was detected by a Western blotting assay. GST and GST-Plek2 were revealed using Coomassie stain. ( F ) Same as E , except GST-Plek2 DEP was used. ( G ) GST pull-down assay of GST or GST-Plek2 incubated with cell lysis from 293T cells. Indicated proteins were detected by Western blotting. ( H ) Bead-conjugated streptavidin pull-down of 293T cells transfected with BirA-Plek2 and incubated with biotin (50 μM). A Western blotting assay of the indicated proteins was performed after SDS-PAGE. ( I ) Western blotting analyses of the indicated proteins in 293T cells transfected with <t>GFP</t> fusion Hsp72 and HA-GST-Akt. ( J ) IP of Flag tag with cell lysate from 293T cells transfected with Flag-Plek2 followed by a Western blotting assay of indicated proteins.
    Anti Gfp, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/anti gfp/product/Cell Signaling Technology Inc
    Average 86 stars, based on 1 article reviews
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    anti gfp - by Bioz Stars, 2023-03
    86/100 stars

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    1) Product Images from "Targeting pleckstrin-2/Akt signaling reduces proliferation in myeloproliferative neoplasm models"

    Article Title: Targeting pleckstrin-2/Akt signaling reduces proliferation in myeloproliferative neoplasm models

    Journal: The Journal of Clinical Investigation

    doi: 10.1172/JCI159638

    ( A ) IP of anti-HA with cell lysate from 293T cells transfected with HA-Plek2, followed by Western blot assays of indicated proteins. ( B ) Western blotting assays of indicated proteins from Cos-7 cells transfected with HA-Plek2. ( C ) Quantitative PCR analysis of AKT from Cos-7 cells transfected with HA-Plek2. ( D ) Western blotting assays of indicated proteins from HEL cells transfected with Flag-Plek2. ( E ) GST pull-down assay using GST or GST-Plek2 with a recombinant Akt. Akt was detected by a Western blotting assay. GST and GST-Plek2 were revealed using Coomassie stain. ( F ) Same as E , except GST-Plek2 DEP was used. ( G ) GST pull-down assay of GST or GST-Plek2 incubated with cell lysis from 293T cells. Indicated proteins were detected by Western blotting. ( H ) Bead-conjugated streptavidin pull-down of 293T cells transfected with BirA-Plek2 and incubated with biotin (50 μM). A Western blotting assay of the indicated proteins was performed after SDS-PAGE. ( I ) Western blotting analyses of the indicated proteins in 293T cells transfected with GFP fusion Hsp72 and HA-GST-Akt. ( J ) IP of Flag tag with cell lysate from 293T cells transfected with Flag-Plek2 followed by a Western blotting assay of indicated proteins.
    Figure Legend Snippet: ( A ) IP of anti-HA with cell lysate from 293T cells transfected with HA-Plek2, followed by Western blot assays of indicated proteins. ( B ) Western blotting assays of indicated proteins from Cos-7 cells transfected with HA-Plek2. ( C ) Quantitative PCR analysis of AKT from Cos-7 cells transfected with HA-Plek2. ( D ) Western blotting assays of indicated proteins from HEL cells transfected with Flag-Plek2. ( E ) GST pull-down assay using GST or GST-Plek2 with a recombinant Akt. Akt was detected by a Western blotting assay. GST and GST-Plek2 were revealed using Coomassie stain. ( F ) Same as E , except GST-Plek2 DEP was used. ( G ) GST pull-down assay of GST or GST-Plek2 incubated with cell lysis from 293T cells. Indicated proteins were detected by Western blotting. ( H ) Bead-conjugated streptavidin pull-down of 293T cells transfected with BirA-Plek2 and incubated with biotin (50 μM). A Western blotting assay of the indicated proteins was performed after SDS-PAGE. ( I ) Western blotting analyses of the indicated proteins in 293T cells transfected with GFP fusion Hsp72 and HA-GST-Akt. ( J ) IP of Flag tag with cell lysate from 293T cells transfected with Flag-Plek2 followed by a Western blotting assay of indicated proteins.

    Techniques Used: Transfection, Western Blot, Real-time Polymerase Chain Reaction, Pull Down Assay, Recombinant, Staining, Incubation, Lysis, SDS Page, FLAG-tag

    anti gfp d5 1 xp rabbit mab monoclonal antibody having cross reactivity  (Cell Signaling Technology Inc)


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    Cell Signaling Technology Inc anti gfp d5 1 xp rabbit mab monoclonal antibody having cross reactivity
    a Strategy for the generation of Ara and Arb KI medaka strains. We designed a gRNA targeting ara intron 8 and arb intron 7 (the last intron). In the donor plasmids, we cloned a genomic fragment beginning from the end of exon 8 of ara and exon 7 of arb and ending just before the stop codon in the last exon, exon 9 of ara , and exon 8 (shown as black closed boxes with ‘E8’) of arb , where the 3xFLAG sequences (shown as blue boxes) and a P2A (2A peptide from porcine teschovirus-1)-mClover3 cassette (shown as green boxes) was placed in the frame. Thus, endogenous Ara and Arb were expressed as FLAG fusion proteins. Both AR-FLAG and P2A-mClover3 were expected to be expressed under the control of the endogenous Ar promoter. To generate KI medaka, sgRNA (for genome digestion in the final intron), donor plasmid, and Cas9 mRNA were co-injected into one-cell-stage medaka embryos. After injection, concurrent cleavage of the targeted genomic locus and the donor plasmid resulted in the integration of donor plasmid DNA containing 3xFLAG-T2A-mClover3 by non-homologous end joining (NHEJ). The scheme shows the forward integration of 3xFLAG-T2A-mClover3. b Expression of mClover3 in adult males of the two knock-in medaka strains, ara FLAG-2A-mClover3 (Ara-KI) and arb FLAG-2A-mClover3 (Arb-KI). White, grey, and red arrows indicate the regions adjacent to pectoral, dorsal, and anal fins, respectively (Ara-KI). White, grey, and red arrows indicate the pectoral, dorsal, and anal fins, respectively (Arb-KI). c Immunohistochemical detection of FLAG-tagged endogenous Ara and Arb in longitudinal sections of papillary processes of the anal fin (6 μm thickness). The merged images represent red fluorescence for immunostaining of FLAG (anti-DDDDK-tag mouse mAb monoclonal antibody), green fluorescence for immunostaining of <t>mClover3</t> <t>(anti-GFP</t> <t>D5.1XP</t> rabbit mAb monoclonal antibody), and blue fluorescence for nuclear staining by DAPI. The medaka Arb-FLAG, but not Ara-FLAG, translocated into the nuclei of cells located in the distal tip of a bone nodule of papillary processes (marked by white arrows). d Representative micrographs of Masson/trichrome staining and immunohistochemical detection of FLAG-tagged endogenous Ara and Arb in adjacent sections of the urogenital region (8 μm thickness). Nuclear localisation of Ara-FLAG and Arb-FLAG was observed in the medulla ventral to the sperm duct, where ar DKO exhibited hyperplasia. e, f Representative micrographs showing immunohistochemical detection of FLAG-tagged endogenous Ara and Arb, and DAPI counterstaining in the brain (12 μm thickness). f shows a higher magnification of the POA. Nuclear localisation of both Ara-FLAG and Arb-FLAG was observed in the POA. n = 6 for Ara-KI and Arb-KI males, respectively.
    Anti Gfp D5 1 Xp Rabbit Mab Monoclonal Antibody Having Cross Reactivity, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/anti gfp d5 1 xp rabbit mab monoclonal antibody having cross reactivity/product/Cell Signaling Technology Inc
    Average 86 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    anti gfp d5 1 xp rabbit mab monoclonal antibody having cross reactivity - by Bioz Stars, 2023-03
    86/100 stars

    Images

    1) Product Images from "Evolutionary differentiation of androgen receptor is responsible for sexual characteristic development in a teleost fish"

    Article Title: Evolutionary differentiation of androgen receptor is responsible for sexual characteristic development in a teleost fish

    Journal: Nature Communications

    doi: 10.1038/s41467-023-37026-6

    a Strategy for the generation of Ara and Arb KI medaka strains. We designed a gRNA targeting ara intron 8 and arb intron 7 (the last intron). In the donor plasmids, we cloned a genomic fragment beginning from the end of exon 8 of ara and exon 7 of arb and ending just before the stop codon in the last exon, exon 9 of ara , and exon 8 (shown as black closed boxes with ‘E8’) of arb , where the 3xFLAG sequences (shown as blue boxes) and a P2A (2A peptide from porcine teschovirus-1)-mClover3 cassette (shown as green boxes) was placed in the frame. Thus, endogenous Ara and Arb were expressed as FLAG fusion proteins. Both AR-FLAG and P2A-mClover3 were expected to be expressed under the control of the endogenous Ar promoter. To generate KI medaka, sgRNA (for genome digestion in the final intron), donor plasmid, and Cas9 mRNA were co-injected into one-cell-stage medaka embryos. After injection, concurrent cleavage of the targeted genomic locus and the donor plasmid resulted in the integration of donor plasmid DNA containing 3xFLAG-T2A-mClover3 by non-homologous end joining (NHEJ). The scheme shows the forward integration of 3xFLAG-T2A-mClover3. b Expression of mClover3 in adult males of the two knock-in medaka strains, ara FLAG-2A-mClover3 (Ara-KI) and arb FLAG-2A-mClover3 (Arb-KI). White, grey, and red arrows indicate the regions adjacent to pectoral, dorsal, and anal fins, respectively (Ara-KI). White, grey, and red arrows indicate the pectoral, dorsal, and anal fins, respectively (Arb-KI). c Immunohistochemical detection of FLAG-tagged endogenous Ara and Arb in longitudinal sections of papillary processes of the anal fin (6 μm thickness). The merged images represent red fluorescence for immunostaining of FLAG (anti-DDDDK-tag mouse mAb monoclonal antibody), green fluorescence for immunostaining of mClover3 (anti-GFP D5.1XP rabbit mAb monoclonal antibody), and blue fluorescence for nuclear staining by DAPI. The medaka Arb-FLAG, but not Ara-FLAG, translocated into the nuclei of cells located in the distal tip of a bone nodule of papillary processes (marked by white arrows). d Representative micrographs of Masson/trichrome staining and immunohistochemical detection of FLAG-tagged endogenous Ara and Arb in adjacent sections of the urogenital region (8 μm thickness). Nuclear localisation of Ara-FLAG and Arb-FLAG was observed in the medulla ventral to the sperm duct, where ar DKO exhibited hyperplasia. e, f Representative micrographs showing immunohistochemical detection of FLAG-tagged endogenous Ara and Arb, and DAPI counterstaining in the brain (12 μm thickness). f shows a higher magnification of the POA. Nuclear localisation of both Ara-FLAG and Arb-FLAG was observed in the POA. n = 6 for Ara-KI and Arb-KI males, respectively.
    Figure Legend Snippet: a Strategy for the generation of Ara and Arb KI medaka strains. We designed a gRNA targeting ara intron 8 and arb intron 7 (the last intron). In the donor plasmids, we cloned a genomic fragment beginning from the end of exon 8 of ara and exon 7 of arb and ending just before the stop codon in the last exon, exon 9 of ara , and exon 8 (shown as black closed boxes with ‘E8’) of arb , where the 3xFLAG sequences (shown as blue boxes) and a P2A (2A peptide from porcine teschovirus-1)-mClover3 cassette (shown as green boxes) was placed in the frame. Thus, endogenous Ara and Arb were expressed as FLAG fusion proteins. Both AR-FLAG and P2A-mClover3 were expected to be expressed under the control of the endogenous Ar promoter. To generate KI medaka, sgRNA (for genome digestion in the final intron), donor plasmid, and Cas9 mRNA were co-injected into one-cell-stage medaka embryos. After injection, concurrent cleavage of the targeted genomic locus and the donor plasmid resulted in the integration of donor plasmid DNA containing 3xFLAG-T2A-mClover3 by non-homologous end joining (NHEJ). The scheme shows the forward integration of 3xFLAG-T2A-mClover3. b Expression of mClover3 in adult males of the two knock-in medaka strains, ara FLAG-2A-mClover3 (Ara-KI) and arb FLAG-2A-mClover3 (Arb-KI). White, grey, and red arrows indicate the regions adjacent to pectoral, dorsal, and anal fins, respectively (Ara-KI). White, grey, and red arrows indicate the pectoral, dorsal, and anal fins, respectively (Arb-KI). c Immunohistochemical detection of FLAG-tagged endogenous Ara and Arb in longitudinal sections of papillary processes of the anal fin (6 μm thickness). The merged images represent red fluorescence for immunostaining of FLAG (anti-DDDDK-tag mouse mAb monoclonal antibody), green fluorescence for immunostaining of mClover3 (anti-GFP D5.1XP rabbit mAb monoclonal antibody), and blue fluorescence for nuclear staining by DAPI. The medaka Arb-FLAG, but not Ara-FLAG, translocated into the nuclei of cells located in the distal tip of a bone nodule of papillary processes (marked by white arrows). d Representative micrographs of Masson/trichrome staining and immunohistochemical detection of FLAG-tagged endogenous Ara and Arb in adjacent sections of the urogenital region (8 μm thickness). Nuclear localisation of Ara-FLAG and Arb-FLAG was observed in the medulla ventral to the sperm duct, where ar DKO exhibited hyperplasia. e, f Representative micrographs showing immunohistochemical detection of FLAG-tagged endogenous Ara and Arb, and DAPI counterstaining in the brain (12 μm thickness). f shows a higher magnification of the POA. Nuclear localisation of both Ara-FLAG and Arb-FLAG was observed in the POA. n = 6 for Ara-KI and Arb-KI males, respectively.

    Techniques Used: Clone Assay, Plasmid Preparation, Injection, Non-Homologous End Joining, Expressing, Knock-In, Immunohistochemical staining, Fluorescence, Immunostaining, Staining

    kap gfp  (Cell Signaling Technology Inc)


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    Cell Signaling Technology Inc kap gfp
    (A) Chlamydomonas expressing <t>KAP-GFP.</t> Indicated are the measured areas of KAP-GFP localization: the two basal bodies and cilia. Scale bar is 5 μm. (B) Super plot quantification of basal body fluorescence in (A) after a 2-h treatment with BCI at the indicated concentrations. Error bars are the mean with the 95% confidence interval for the averages from the trials. P = 0.5126, which was determined by an ordinary one-way ANOVA. (C) Ciliary length plotted against ciliary fluorescence for cells in DMSO (orange circles) or 30 μM BCI (purple) after a 2-h treatment (n = 40, N = 1). Simple linear regression was used to generate linear regression lines and comparisons. For DMSO, y = 0.1171x + 0.4305 and r 2 = 0.05676. For BCI, y = 0.1174x + 0.4051 and r 2 = 0.2636. Comparing slopes, F = 4.048e-006 (1, 76) and P = 0.9984. Comparing intercepts, F = 0.005429 (1, 77) and P = 0.9415. (D) Comparison of total ciliary fluorescence shown in (C). P -values were determined using a t test. (E) Comparisons of ciliary fluorescence in DMSO or BCI per micrometer of cilia in (C). P -values were determined using a t test. (F) Example kymographs collected from total internal reflection fluorescent microscopy of KAP-GFP movement in cilia in cells treated with DMSO (top) or 30 μM BCI (bottom) for 2 h. Vertical scale bars are 4 μm. Horizontal scale bars are 2 s. (G, H, I) KAP-GFP dynamics quantified from the kymographs (n = 20, N = 1). Error bars are the mean with the 95% confidence interval (n = 20, N = 1). P -values were calculated from a two-tailed unpaired t test for pairwise comparisons. (G) Frequency of KAP-GFP trains measured as the total amount of trains counted over the total amount of time the kymograph was collected. For DMSO, n = 40 (1 and 2 h). For BCI, n = 30 (1 h) and 34 (2 h). (H) Velocity of KAP-GFP trains measured as the distance traveled in μm over time in seconds. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). (I) Relative injection size of KAP-GFP trains measured as the relative total fluorescent intensity of each train relative to the maximum measurement. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). P -values were determined using a t test.
    Kap Gfp, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/kap gfp/product/Cell Signaling Technology Inc
    Average 86 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    kap gfp - by Bioz Stars, 2023-03
    86/100 stars

    Images

    1) Product Images from "The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement"

    Article Title: The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement

    Journal: Life Science Alliance

    doi: 10.26508/lsa.202301899

    (A) Chlamydomonas expressing KAP-GFP. Indicated are the measured areas of KAP-GFP localization: the two basal bodies and cilia. Scale bar is 5 μm. (B) Super plot quantification of basal body fluorescence in (A) after a 2-h treatment with BCI at the indicated concentrations. Error bars are the mean with the 95% confidence interval for the averages from the trials. P = 0.5126, which was determined by an ordinary one-way ANOVA. (C) Ciliary length plotted against ciliary fluorescence for cells in DMSO (orange circles) or 30 μM BCI (purple) after a 2-h treatment (n = 40, N = 1). Simple linear regression was used to generate linear regression lines and comparisons. For DMSO, y = 0.1171x + 0.4305 and r 2 = 0.05676. For BCI, y = 0.1174x + 0.4051 and r 2 = 0.2636. Comparing slopes, F = 4.048e-006 (1, 76) and P = 0.9984. Comparing intercepts, F = 0.005429 (1, 77) and P = 0.9415. (D) Comparison of total ciliary fluorescence shown in (C). P -values were determined using a t test. (E) Comparisons of ciliary fluorescence in DMSO or BCI per micrometer of cilia in (C). P -values were determined using a t test. (F) Example kymographs collected from total internal reflection fluorescent microscopy of KAP-GFP movement in cilia in cells treated with DMSO (top) or 30 μM BCI (bottom) for 2 h. Vertical scale bars are 4 μm. Horizontal scale bars are 2 s. (G, H, I) KAP-GFP dynamics quantified from the kymographs (n = 20, N = 1). Error bars are the mean with the 95% confidence interval (n = 20, N = 1). P -values were calculated from a two-tailed unpaired t test for pairwise comparisons. (G) Frequency of KAP-GFP trains measured as the total amount of trains counted over the total amount of time the kymograph was collected. For DMSO, n = 40 (1 and 2 h). For BCI, n = 30 (1 h) and 34 (2 h). (H) Velocity of KAP-GFP trains measured as the distance traveled in μm over time in seconds. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). (I) Relative injection size of KAP-GFP trains measured as the relative total fluorescent intensity of each train relative to the maximum measurement. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). P -values were determined using a t test.
    Figure Legend Snippet: (A) Chlamydomonas expressing KAP-GFP. Indicated are the measured areas of KAP-GFP localization: the two basal bodies and cilia. Scale bar is 5 μm. (B) Super plot quantification of basal body fluorescence in (A) after a 2-h treatment with BCI at the indicated concentrations. Error bars are the mean with the 95% confidence interval for the averages from the trials. P = 0.5126, which was determined by an ordinary one-way ANOVA. (C) Ciliary length plotted against ciliary fluorescence for cells in DMSO (orange circles) or 30 μM BCI (purple) after a 2-h treatment (n = 40, N = 1). Simple linear regression was used to generate linear regression lines and comparisons. For DMSO, y = 0.1171x + 0.4305 and r 2 = 0.05676. For BCI, y = 0.1174x + 0.4051 and r 2 = 0.2636. Comparing slopes, F = 4.048e-006 (1, 76) and P = 0.9984. Comparing intercepts, F = 0.005429 (1, 77) and P = 0.9415. (D) Comparison of total ciliary fluorescence shown in (C). P -values were determined using a t test. (E) Comparisons of ciliary fluorescence in DMSO or BCI per micrometer of cilia in (C). P -values were determined using a t test. (F) Example kymographs collected from total internal reflection fluorescent microscopy of KAP-GFP movement in cilia in cells treated with DMSO (top) or 30 μM BCI (bottom) for 2 h. Vertical scale bars are 4 μm. Horizontal scale bars are 2 s. (G, H, I) KAP-GFP dynamics quantified from the kymographs (n = 20, N = 1). Error bars are the mean with the 95% confidence interval (n = 20, N = 1). P -values were calculated from a two-tailed unpaired t test for pairwise comparisons. (G) Frequency of KAP-GFP trains measured as the total amount of trains counted over the total amount of time the kymograph was collected. For DMSO, n = 40 (1 and 2 h). For BCI, n = 30 (1 h) and 34 (2 h). (H) Velocity of KAP-GFP trains measured as the distance traveled in μm over time in seconds. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). (I) Relative injection size of KAP-GFP trains measured as the relative total fluorescent intensity of each train relative to the maximum measurement. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). P -values were determined using a t test.

    Techniques Used: Expressing, Fluorescence, Microscopy, Two Tailed Test, Injection

    (A) Immunofluorescent images of KAP-GFP cells during regeneration in either DMSO or 30 μM BCI. Scale bars are 5 μm. Red arrows point to basal bodies, which are the object of quantification in (D). (B) Western blot for KAP-GFP expression in regenerating cells in either DMSO (D) or 30 μM BCI (B). Total protein was measured with amido black. (C) Quantification of (B). Error bars are the mean with SD for three independent experiments. P -values were calculated using an ordinary one-way ANOVA with Dunnett’s multiple comparisons test. (D) Quantification of KAP-GFP fluorescence at the basal bodies in (A). Error bars are the mean with the 95% confidence interval for the averages from three independent trials (n = 30, N = 3). The P -value was calculated using an unpaired t test with Welch’s correction.
    Figure Legend Snippet: (A) Immunofluorescent images of KAP-GFP cells during regeneration in either DMSO or 30 μM BCI. Scale bars are 5 μm. Red arrows point to basal bodies, which are the object of quantification in (D). (B) Western blot for KAP-GFP expression in regenerating cells in either DMSO (D) or 30 μM BCI (B). Total protein was measured with amido black. (C) Quantification of (B). Error bars are the mean with SD for three independent experiments. P -values were calculated using an ordinary one-way ANOVA with Dunnett’s multiple comparisons test. (D) Quantification of KAP-GFP fluorescence at the basal bodies in (A). Error bars are the mean with the 95% confidence interval for the averages from three independent trials (n = 30, N = 3). The P -value was calculated using an unpaired t test with Welch’s correction.

    Techniques Used: Western Blot, Expressing, Fluorescence

    (A) Western blot of KAP-GFP expression compared with total protein shown with amido black. Cells were treated for 2 h with either 0.5% DMSO, 20 μM BCI, 50 μM MG132, or both 50 μM MG132 and 20 μM BCI. (A, B) Quantification of (A). Error bars are SD of the mean (N = 3). The P -value was determined by an unpaired t test between BCI and BCI + MG132.
    Figure Legend Snippet: (A) Western blot of KAP-GFP expression compared with total protein shown with amido black. Cells were treated for 2 h with either 0.5% DMSO, 20 μM BCI, 50 μM MG132, or both 50 μM MG132 and 20 μM BCI. (A, B) Quantification of (A). Error bars are SD of the mean (N = 3). The P -value was determined by an unpaired t test between BCI and BCI + MG132.

    Techniques Used: Western Blot, Expressing

    BCI inhibits phosphate removal from MAPK. This ultimately alters or inhibits ciliogenesis, KAP-GFP dynamics in cilia, KAP-GFP protein synthesis, NPHP4 protein localization at the transition zone, membrane trafficking, and microtubule organization.
    Figure Legend Snippet: BCI inhibits phosphate removal from MAPK. This ultimately alters or inhibits ciliogenesis, KAP-GFP dynamics in cilia, KAP-GFP protein synthesis, NPHP4 protein localization at the transition zone, membrane trafficking, and microtubule organization.

    Techniques Used:

    Tools and reagents.
    Figure Legend Snippet: Tools and reagents.

    Techniques Used: Staining, Mutagenesis

    gfp d5 1 rabbit mab  (Cell Signaling Technology Inc)


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    Cell Signaling Technology Inc gfp d5 1 rabbit mab
    Tools and reagents.
    Gfp D5 1 Rabbit Mab, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Images

    1) Product Images from "The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement"

    Article Title: The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement

    Journal: Life Science Alliance

    doi: 10.26508/lsa.202301899

    Tools and reagents.
    Figure Legend Snippet: Tools and reagents.

    Techniques Used: Staining, Mutagenesis

    gfp antibody  (Cell Signaling Technology Inc)


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    Cell Signaling Technology Inc gfp antibody
    (A) Chlamydomonas <t>expressing</t> <t>KAP-GFP.</t> Indicated are the measured areas of KAP-GFP localization: the two basal bodies and cilia. Scale bar is 5 μm. (B) Super plot quantification of basal body fluorescence in (A) after a 2-h treatment with BCI at the indicated concentrations. Error bars are the mean with the 95% confidence interval for the averages from the trials. P = 0.5126, which was determined by an ordinary one-way ANOVA. (C) Ciliary length plotted against ciliary fluorescence for cells in DMSO (orange circles) or 30 μM BCI (purple) after a 2-h treatment (n = 40, N = 1). Simple linear regression was used to generate linear regression lines and comparisons. For DMSO, y = 0.1171x + 0.4305 and r 2 = 0.05676. For BCI, y = 0.1174x + 0.4051 and r 2 = 0.2636. Comparing slopes, F = 4.048e-006 (1, 76) and P = 0.9984. Comparing intercepts, F = 0.005429 (1, 77) and P = 0.9415. (D) Comparison of total ciliary fluorescence shown in (C). P -values were determined using a t test. (E) Comparisons of ciliary fluorescence in DMSO or BCI per micrometer of cilia in (C). P -values were determined using a t test. (F) Example kymographs collected from total internal reflection fluorescent microscopy of KAP-GFP movement in cilia in cells treated with DMSO (top) or 30 μM BCI (bottom) for 2 h. Vertical scale bars are 4 μm. Horizontal scale bars are 2 s. (G, H, I) KAP-GFP dynamics quantified from the kymographs (n = 20, N = 1). Error bars are the mean with the 95% confidence interval (n = 20, N = 1). P -values were calculated from a two-tailed unpaired t test for pairwise comparisons. (G) Frequency of KAP-GFP trains measured as the total amount of trains counted over the total amount of time the kymograph was collected. For DMSO, n = 40 (1 and 2 h). For BCI, n = 30 (1 h) and 34 (2 h). (H) Velocity of KAP-GFP trains measured as the distance traveled in μm over time in seconds. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). (I) Relative injection size of KAP-GFP trains measured as the relative total fluorescent intensity of each train relative to the maximum measurement. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). P -values were determined using a t test.
    Gfp Antibody, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Images

    1) Product Images from "The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement"

    Article Title: The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement

    Journal: Life Science Alliance

    doi: 10.26508/lsa.202301899

    (A) Chlamydomonas expressing KAP-GFP. Indicated are the measured areas of KAP-GFP localization: the two basal bodies and cilia. Scale bar is 5 μm. (B) Super plot quantification of basal body fluorescence in (A) after a 2-h treatment with BCI at the indicated concentrations. Error bars are the mean with the 95% confidence interval for the averages from the trials. P = 0.5126, which was determined by an ordinary one-way ANOVA. (C) Ciliary length plotted against ciliary fluorescence for cells in DMSO (orange circles) or 30 μM BCI (purple) after a 2-h treatment (n = 40, N = 1). Simple linear regression was used to generate linear regression lines and comparisons. For DMSO, y = 0.1171x + 0.4305 and r 2 = 0.05676. For BCI, y = 0.1174x + 0.4051 and r 2 = 0.2636. Comparing slopes, F = 4.048e-006 (1, 76) and P = 0.9984. Comparing intercepts, F = 0.005429 (1, 77) and P = 0.9415. (D) Comparison of total ciliary fluorescence shown in (C). P -values were determined using a t test. (E) Comparisons of ciliary fluorescence in DMSO or BCI per micrometer of cilia in (C). P -values were determined using a t test. (F) Example kymographs collected from total internal reflection fluorescent microscopy of KAP-GFP movement in cilia in cells treated with DMSO (top) or 30 μM BCI (bottom) for 2 h. Vertical scale bars are 4 μm. Horizontal scale bars are 2 s. (G, H, I) KAP-GFP dynamics quantified from the kymographs (n = 20, N = 1). Error bars are the mean with the 95% confidence interval (n = 20, N = 1). P -values were calculated from a two-tailed unpaired t test for pairwise comparisons. (G) Frequency of KAP-GFP trains measured as the total amount of trains counted over the total amount of time the kymograph was collected. For DMSO, n = 40 (1 and 2 h). For BCI, n = 30 (1 h) and 34 (2 h). (H) Velocity of KAP-GFP trains measured as the distance traveled in μm over time in seconds. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). (I) Relative injection size of KAP-GFP trains measured as the relative total fluorescent intensity of each train relative to the maximum measurement. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). P -values were determined using a t test.
    Figure Legend Snippet: (A) Chlamydomonas expressing KAP-GFP. Indicated are the measured areas of KAP-GFP localization: the two basal bodies and cilia. Scale bar is 5 μm. (B) Super plot quantification of basal body fluorescence in (A) after a 2-h treatment with BCI at the indicated concentrations. Error bars are the mean with the 95% confidence interval for the averages from the trials. P = 0.5126, which was determined by an ordinary one-way ANOVA. (C) Ciliary length plotted against ciliary fluorescence for cells in DMSO (orange circles) or 30 μM BCI (purple) after a 2-h treatment (n = 40, N = 1). Simple linear regression was used to generate linear regression lines and comparisons. For DMSO, y = 0.1171x + 0.4305 and r 2 = 0.05676. For BCI, y = 0.1174x + 0.4051 and r 2 = 0.2636. Comparing slopes, F = 4.048e-006 (1, 76) and P = 0.9984. Comparing intercepts, F = 0.005429 (1, 77) and P = 0.9415. (D) Comparison of total ciliary fluorescence shown in (C). P -values were determined using a t test. (E) Comparisons of ciliary fluorescence in DMSO or BCI per micrometer of cilia in (C). P -values were determined using a t test. (F) Example kymographs collected from total internal reflection fluorescent microscopy of KAP-GFP movement in cilia in cells treated with DMSO (top) or 30 μM BCI (bottom) for 2 h. Vertical scale bars are 4 μm. Horizontal scale bars are 2 s. (G, H, I) KAP-GFP dynamics quantified from the kymographs (n = 20, N = 1). Error bars are the mean with the 95% confidence interval (n = 20, N = 1). P -values were calculated from a two-tailed unpaired t test for pairwise comparisons. (G) Frequency of KAP-GFP trains measured as the total amount of trains counted over the total amount of time the kymograph was collected. For DMSO, n = 40 (1 and 2 h). For BCI, n = 30 (1 h) and 34 (2 h). (H) Velocity of KAP-GFP trains measured as the distance traveled in μm over time in seconds. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). (I) Relative injection size of KAP-GFP trains measured as the relative total fluorescent intensity of each train relative to the maximum measurement. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). P -values were determined using a t test.

    Techniques Used: Expressing, Fluorescence, Microscopy, Two Tailed Test, Injection

    (A) Immunofluorescent images of KAP-GFP cells during regeneration in either DMSO or 30 μM BCI. Scale bars are 5 μm. Red arrows point to basal bodies, which are the object of quantification in (D). (B) Western blot for KAP-GFP expression in regenerating cells in either DMSO (D) or 30 μM BCI (B). Total protein was measured with amido black. (C) Quantification of (B). Error bars are the mean with SD for three independent experiments. P -values were calculated using an ordinary one-way ANOVA with Dunnett’s multiple comparisons test. (D) Quantification of KAP-GFP fluorescence at the basal bodies in (A). Error bars are the mean with the 95% confidence interval for the averages from three independent trials (n = 30, N = 3). The P -value was calculated using an unpaired t test with Welch’s correction.
    Figure Legend Snippet: (A) Immunofluorescent images of KAP-GFP cells during regeneration in either DMSO or 30 μM BCI. Scale bars are 5 μm. Red arrows point to basal bodies, which are the object of quantification in (D). (B) Western blot for KAP-GFP expression in regenerating cells in either DMSO (D) or 30 μM BCI (B). Total protein was measured with amido black. (C) Quantification of (B). Error bars are the mean with SD for three independent experiments. P -values were calculated using an ordinary one-way ANOVA with Dunnett’s multiple comparisons test. (D) Quantification of KAP-GFP fluorescence at the basal bodies in (A). Error bars are the mean with the 95% confidence interval for the averages from three independent trials (n = 30, N = 3). The P -value was calculated using an unpaired t test with Welch’s correction.

    Techniques Used: Western Blot, Expressing, Fluorescence

    (A) Western blot of KAP-GFP expression compared with total protein shown with amido black. Cells were treated for 2 h with either 0.5% DMSO, 20 μM BCI, 50 μM MG132, or both 50 μM MG132 and 20 μM BCI. (A, B) Quantification of (A). Error bars are SD of the mean (N = 3). The P -value was determined by an unpaired t test between BCI and BCI + MG132.
    Figure Legend Snippet: (A) Western blot of KAP-GFP expression compared with total protein shown with amido black. Cells were treated for 2 h with either 0.5% DMSO, 20 μM BCI, 50 μM MG132, or both 50 μM MG132 and 20 μM BCI. (A, B) Quantification of (A). Error bars are SD of the mean (N = 3). The P -value was determined by an unpaired t test between BCI and BCI + MG132.

    Techniques Used: Western Blot, Expressing

    BCI inhibits phosphate removal from MAPK. This ultimately alters or inhibits ciliogenesis, KAP-GFP dynamics in cilia, KAP-GFP protein synthesis, NPHP4 protein localization at the transition zone, membrane trafficking, and microtubule organization.
    Figure Legend Snippet: BCI inhibits phosphate removal from MAPK. This ultimately alters or inhibits ciliogenesis, KAP-GFP dynamics in cilia, KAP-GFP protein synthesis, NPHP4 protein localization at the transition zone, membrane trafficking, and microtubule organization.

    Techniques Used:

    gfp  (Cell Signaling Technology Inc)


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    Cell Signaling Technology Inc gfp
    (A) SNAIL EMT-TF upregulation in FLASH KD cells was determined by qPCR at mRNA level and Western blot analysis at protein level. (B) Hybrid EMT phenotype in FLASH-depleted cells as evidenced by distinct expression patterns of ECAD, SNAIL and ZEB1 (left panel). Overexpression of either ZEB1 (ZEB1-Myc), FLASH <t>(FLASH-GFP)</t> or SNAIL (SNAIL-Flag) inhibits E-cadherin expression (ECAD) in cancer cells (right panel). (C) Scatter plots of SNAIL <t>and</t> <t>SLUG</t> levels and the Mesenchymal score in TGFβ-treated and untreated FLASH, NPAT and SLBT-depleted cells. Spearman’s correlation coefficient (ρ) and corresponding p-value ( p ) are reported. Two independent experiments were used for the analysis. (D) Heat map analysis of mesenchymal genes altered in FLASH, NPAT and SLBT-depleted cell under no treatment (left panel) and TGFβ-treated conditions (right panel). (E) Mesenchymal markers ACTA2 and POSTN expression was determined by qPCR at mRNA level in WT, SNAIL KO and SLUG KO in control cells and FLASH-depleted cells. The significance of differences was confirmed by Student t test for silencing efficiency (*, p < 0.05; **, p < 0.01).
    Gfp, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Images

    1) Product Images from "Dual role of CASP8AP2/FLASH in regulating epithelial-to-mesenchymal (EMT) plasticity"

    Article Title: Dual role of CASP8AP2/FLASH in regulating epithelial-to-mesenchymal (EMT) plasticity

    Journal: bioRxiv

    doi: 10.1101/2023.03.12.532282

    (A) SNAIL EMT-TF upregulation in FLASH KD cells was determined by qPCR at mRNA level and Western blot analysis at protein level. (B) Hybrid EMT phenotype in FLASH-depleted cells as evidenced by distinct expression patterns of ECAD, SNAIL and ZEB1 (left panel). Overexpression of either ZEB1 (ZEB1-Myc), FLASH (FLASH-GFP) or SNAIL (SNAIL-Flag) inhibits E-cadherin expression (ECAD) in cancer cells (right panel). (C) Scatter plots of SNAIL and SLUG levels and the Mesenchymal score in TGFβ-treated and untreated FLASH, NPAT and SLBT-depleted cells. Spearman’s correlation coefficient (ρ) and corresponding p-value ( p ) are reported. Two independent experiments were used for the analysis. (D) Heat map analysis of mesenchymal genes altered in FLASH, NPAT and SLBT-depleted cell under no treatment (left panel) and TGFβ-treated conditions (right panel). (E) Mesenchymal markers ACTA2 and POSTN expression was determined by qPCR at mRNA level in WT, SNAIL KO and SLUG KO in control cells and FLASH-depleted cells. The significance of differences was confirmed by Student t test for silencing efficiency (*, p < 0.05; **, p < 0.01).
    Figure Legend Snippet: (A) SNAIL EMT-TF upregulation in FLASH KD cells was determined by qPCR at mRNA level and Western blot analysis at protein level. (B) Hybrid EMT phenotype in FLASH-depleted cells as evidenced by distinct expression patterns of ECAD, SNAIL and ZEB1 (left panel). Overexpression of either ZEB1 (ZEB1-Myc), FLASH (FLASH-GFP) or SNAIL (SNAIL-Flag) inhibits E-cadherin expression (ECAD) in cancer cells (right panel). (C) Scatter plots of SNAIL and SLUG levels and the Mesenchymal score in TGFβ-treated and untreated FLASH, NPAT and SLBT-depleted cells. Spearman’s correlation coefficient (ρ) and corresponding p-value ( p ) are reported. Two independent experiments were used for the analysis. (D) Heat map analysis of mesenchymal genes altered in FLASH, NPAT and SLBT-depleted cell under no treatment (left panel) and TGFβ-treated conditions (right panel). (E) Mesenchymal markers ACTA2 and POSTN expression was determined by qPCR at mRNA level in WT, SNAIL KO and SLUG KO in control cells and FLASH-depleted cells. The significance of differences was confirmed by Student t test for silencing efficiency (*, p < 0.05; **, p < 0.01).

    Techniques Used: Western Blot, Expressing, Over Expression

    rfp gfp lc3 adeno  (Cell Signaling Technology Inc)


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    Cell Signaling Technology Inc rfp gfp lc3 adeno
    Celastrol induced 3T3-L1 preadipocytes apoptosis through inhibition of autophagy (A) , Real-time qPCR of genes were studied in 3T3-L1 preadipocytes after 0, 2 and 4 μM celastrol treatment for 16 h ( n = 6) (B) , Western blotting of P62 and <t>LC3</t> I/II were developed in 3T3-L1 preadipocytes after 0, 1 and 2 μM celastrol treatment for 24 h ( n = 3) (C) , Western blotting of P62 and LC3 I/II were developed in preadipocytes after 2 μM celastrol treatment for 24 h with or without 15 μM rapamycin, 40 μM chloroquine or 200 nM bafilomycin A1 ( n = 3) (D) , Autophagosome degradation was observed with <t>RFP-GFP-LC3</t> <t>adeno-associated</t> virus, after 24 h treatment of 1 μM celastrol, 40 μM chloroquine or 15 μM rapamycin, respectively ( n = 7). Red fluorescence represented normal autophagosome degradation, while yellow represented halt of degradation (E–F) , 3T3-L1 preadipocytes were treated with 24 h of celastrol, 15 μM rapamycin, 40 μM chloroquine, 200 nM bafilomycin A1, celastrol + 15 μM rapamycin, celastrol + 40 μM chloroquine or celastrol + 200 nM bafilomycin A1, respectively, and subjected to flow cytometry analysis (E) ( n = 7) and Western blotting of cleaved-Caspase3 (F) ( n = 3). Protein expression was calculated relative to β -actin and depicted at the top of each blot. Error bars represent SEM; * p < 0.05; ** p < 0.01; *** p < 0.001. Veh, vehicle; Cela, celastrol; 1C, 1 μM celastrol; 2C, 2 μM celastrol; BafA1, bafilomycin A1; CQ, chloroquine; Rapa, rapamycin; Cas 3, Caspase 3.
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    1) Product Images from "Celastrol directly binds with VAMP7 and RAB7 to inhibit autophagy and induce apoptosis in preadipocytes"

    Article Title: Celastrol directly binds with VAMP7 and RAB7 to inhibit autophagy and induce apoptosis in preadipocytes

    Journal: Frontiers in Pharmacology

    doi: 10.3389/fphar.2023.1094584

    Celastrol induced 3T3-L1 preadipocytes apoptosis through inhibition of autophagy (A) , Real-time qPCR of genes were studied in 3T3-L1 preadipocytes after 0, 2 and 4 μM celastrol treatment for 16 h ( n = 6) (B) , Western blotting of P62 and LC3 I/II were developed in 3T3-L1 preadipocytes after 0, 1 and 2 μM celastrol treatment for 24 h ( n = 3) (C) , Western blotting of P62 and LC3 I/II were developed in preadipocytes after 2 μM celastrol treatment for 24 h with or without 15 μM rapamycin, 40 μM chloroquine or 200 nM bafilomycin A1 ( n = 3) (D) , Autophagosome degradation was observed with RFP-GFP-LC3 adeno-associated virus, after 24 h treatment of 1 μM celastrol, 40 μM chloroquine or 15 μM rapamycin, respectively ( n = 7). Red fluorescence represented normal autophagosome degradation, while yellow represented halt of degradation (E–F) , 3T3-L1 preadipocytes were treated with 24 h of celastrol, 15 μM rapamycin, 40 μM chloroquine, 200 nM bafilomycin A1, celastrol + 15 μM rapamycin, celastrol + 40 μM chloroquine or celastrol + 200 nM bafilomycin A1, respectively, and subjected to flow cytometry analysis (E) ( n = 7) and Western blotting of cleaved-Caspase3 (F) ( n = 3). Protein expression was calculated relative to β -actin and depicted at the top of each blot. Error bars represent SEM; * p < 0.05; ** p < 0.01; *** p < 0.001. Veh, vehicle; Cela, celastrol; 1C, 1 μM celastrol; 2C, 2 μM celastrol; BafA1, bafilomycin A1; CQ, chloroquine; Rapa, rapamycin; Cas 3, Caspase 3.
    Figure Legend Snippet: Celastrol induced 3T3-L1 preadipocytes apoptosis through inhibition of autophagy (A) , Real-time qPCR of genes were studied in 3T3-L1 preadipocytes after 0, 2 and 4 μM celastrol treatment for 16 h ( n = 6) (B) , Western blotting of P62 and LC3 I/II were developed in 3T3-L1 preadipocytes after 0, 1 and 2 μM celastrol treatment for 24 h ( n = 3) (C) , Western blotting of P62 and LC3 I/II were developed in preadipocytes after 2 μM celastrol treatment for 24 h with or without 15 μM rapamycin, 40 μM chloroquine or 200 nM bafilomycin A1 ( n = 3) (D) , Autophagosome degradation was observed with RFP-GFP-LC3 adeno-associated virus, after 24 h treatment of 1 μM celastrol, 40 μM chloroquine or 15 μM rapamycin, respectively ( n = 7). Red fluorescence represented normal autophagosome degradation, while yellow represented halt of degradation (E–F) , 3T3-L1 preadipocytes were treated with 24 h of celastrol, 15 μM rapamycin, 40 μM chloroquine, 200 nM bafilomycin A1, celastrol + 15 μM rapamycin, celastrol + 40 μM chloroquine or celastrol + 200 nM bafilomycin A1, respectively, and subjected to flow cytometry analysis (E) ( n = 7) and Western blotting of cleaved-Caspase3 (F) ( n = 3). Protein expression was calculated relative to β -actin and depicted at the top of each blot. Error bars represent SEM; * p < 0.05; ** p < 0.01; *** p < 0.001. Veh, vehicle; Cela, celastrol; 1C, 1 μM celastrol; 2C, 2 μM celastrol; BafA1, bafilomycin A1; CQ, chloroquine; Rapa, rapamycin; Cas 3, Caspase 3.

    Techniques Used: Inhibition, Western Blot, Fluorescence, Flow Cytometry, Expressing

    Celastrol inhibited the fusion of autophagosome and lysosome (A–B) , 3T3-L1 preadipocytes were treated with 24 h of 1 μM celastrol, 40 μM chloroquine or 200 nM bafilomycin A1, and subjected to LysoTracker red staining (A) ( n = 3) and immunofluorescence staining of LAMP1 and LC3 (B) . The representative images were shown on the left, and the Pearson correlation coefficient (PCC) for the colocalization of RFP-LC3 and Alexa Fluor 647-LAMP1 were presented on the upper right ( n = 3) (C) , 3T3-L1 preadipocytes were treated with 1 and 2 μM celastrol for 24 h and subjected to Western blotting of LAMP1 ( n = 3) (D) , 3T3-L1 preadipocytes were treated with 1, 2 μM celastrol and 40 μM chloroquine for 12 h and subjected to electron microscopy ( n = 5) (E) , 3T3-L1 adipocytes were treated with 1 and 2 μM celastrol for 24 h and subjected to Western blotting of P62 and LC3 I/II ( n = 3). Protein expression was calculated relative to β -actin or GAPDH and depicted at the top of each blot. Error bars represent SEM. Veh, vehicle; Cela, celastrol; CQ, chloroquine; BafA1, bafilomycin A1; AP, autophagosome.
    Figure Legend Snippet: Celastrol inhibited the fusion of autophagosome and lysosome (A–B) , 3T3-L1 preadipocytes were treated with 24 h of 1 μM celastrol, 40 μM chloroquine or 200 nM bafilomycin A1, and subjected to LysoTracker red staining (A) ( n = 3) and immunofluorescence staining of LAMP1 and LC3 (B) . The representative images were shown on the left, and the Pearson correlation coefficient (PCC) for the colocalization of RFP-LC3 and Alexa Fluor 647-LAMP1 were presented on the upper right ( n = 3) (C) , 3T3-L1 preadipocytes were treated with 1 and 2 μM celastrol for 24 h and subjected to Western blotting of LAMP1 ( n = 3) (D) , 3T3-L1 preadipocytes were treated with 1, 2 μM celastrol and 40 μM chloroquine for 12 h and subjected to electron microscopy ( n = 5) (E) , 3T3-L1 adipocytes were treated with 1 and 2 μM celastrol for 24 h and subjected to Western blotting of P62 and LC3 I/II ( n = 3). Protein expression was calculated relative to β -actin or GAPDH and depicted at the top of each blot. Error bars represent SEM. Veh, vehicle; Cela, celastrol; CQ, chloroquine; BafA1, bafilomycin A1; AP, autophagosome.

    Techniques Used: Staining, Immunofluorescence, Western Blot, Electron Microscopy, Expressing

    anti gfp  (Cell Signaling Technology Inc)


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    Cell Signaling Technology Inc anti gfp
    (A) Drawing representing the knock-in (KI) of <t>GFP</t> in the svb locus ( svb :: GFP ). svb is transcribed and translated as a long repressor form (Svb REP ), that contains the exon 1S. In embryonic epidermis, the presence of Pri peptides and Ubr3 induce the N-terminal domain degradation, leading to a shorter activator form of Svb (Svb ACT ). <t>(B)</t> <t>Anti-GFP</t> (green) and anti-1S (purple) immunostainings on svb :: GFP KI at larval stage (wL3) and pupal leg disc (1h APF, contoured by yellow dashed-line) showed that Svb is localised ubiquitously in the leg disc and is under Svb REP form. However, at the pupal stage, Svb is processed in the whole leg disc, and remains as the Svb ACT form, as confirmed by the absence of 1S signal. Scale bar = 100μm. (C) Anti-1S immunostaining in the pupal leg disc where mosaic clones for pri -/- ( tal S18 ) and Ubr3 /- ( Ubr3 B ) were induced. The clones are indicated by the absence of GFP and contoured by the yellow dashed-line. The DNA is marked in blue, 1S in red and the GFP in green, white square highlights the region displayed in the close-up. In control clones, Svb is processed as 1S signal is lost. In Ubr3 -/- clones, 1S staining is remaining, showing that Svb REP is not processed. p ri -/- mutant clones have been generated in Minute background with the flippase under the control of Dll EM212 -Gal4 in order to get large clones (if pri -/- clones are too small, they are behaving like control clones). The absence of GFP indicates that almost all the leg is clonal (yellow dashed-line) and positive for anti-1S signal. Scale bar= 100μm. On the close-up, scale bar= 20μm.
    Anti Gfp, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "The pleiotropic functions of Pri smORF peptides synchronise leg development regulators"

    Article Title: The pleiotropic functions of Pri smORF peptides synchronise leg development regulators

    Journal: bioRxiv

    doi: 10.1101/2023.03.07.531572

    (A) Drawing representing the knock-in (KI) of GFP in the svb locus ( svb :: GFP ). svb is transcribed and translated as a long repressor form (Svb REP ), that contains the exon 1S. In embryonic epidermis, the presence of Pri peptides and Ubr3 induce the N-terminal domain degradation, leading to a shorter activator form of Svb (Svb ACT ). (B) Anti-GFP (green) and anti-1S (purple) immunostainings on svb :: GFP KI at larval stage (wL3) and pupal leg disc (1h APF, contoured by yellow dashed-line) showed that Svb is localised ubiquitously in the leg disc and is under Svb REP form. However, at the pupal stage, Svb is processed in the whole leg disc, and remains as the Svb ACT form, as confirmed by the absence of 1S signal. Scale bar = 100μm. (C) Anti-1S immunostaining in the pupal leg disc where mosaic clones for pri -/- ( tal S18 ) and Ubr3 /- ( Ubr3 B ) were induced. The clones are indicated by the absence of GFP and contoured by the yellow dashed-line. The DNA is marked in blue, 1S in red and the GFP in green, white square highlights the region displayed in the close-up. In control clones, Svb is processed as 1S signal is lost. In Ubr3 -/- clones, 1S staining is remaining, showing that Svb REP is not processed. p ri -/- mutant clones have been generated in Minute background with the flippase under the control of Dll EM212 -Gal4 in order to get large clones (if pri -/- clones are too small, they are behaving like control clones). The absence of GFP indicates that almost all the leg is clonal (yellow dashed-line) and positive for anti-1S signal. Scale bar= 100μm. On the close-up, scale bar= 20μm.
    Figure Legend Snippet: (A) Drawing representing the knock-in (KI) of GFP in the svb locus ( svb :: GFP ). svb is transcribed and translated as a long repressor form (Svb REP ), that contains the exon 1S. In embryonic epidermis, the presence of Pri peptides and Ubr3 induce the N-terminal domain degradation, leading to a shorter activator form of Svb (Svb ACT ). (B) Anti-GFP (green) and anti-1S (purple) immunostainings on svb :: GFP KI at larval stage (wL3) and pupal leg disc (1h APF, contoured by yellow dashed-line) showed that Svb is localised ubiquitously in the leg disc and is under Svb REP form. However, at the pupal stage, Svb is processed in the whole leg disc, and remains as the Svb ACT form, as confirmed by the absence of 1S signal. Scale bar = 100μm. (C) Anti-1S immunostaining in the pupal leg disc where mosaic clones for pri -/- ( tal S18 ) and Ubr3 /- ( Ubr3 B ) were induced. The clones are indicated by the absence of GFP and contoured by the yellow dashed-line. The DNA is marked in blue, 1S in red and the GFP in green, white square highlights the region displayed in the close-up. In control clones, Svb is processed as 1S signal is lost. In Ubr3 -/- clones, 1S staining is remaining, showing that Svb REP is not processed. p ri -/- mutant clones have been generated in Minute background with the flippase under the control of Dll EM212 -Gal4 in order to get large clones (if pri -/- clones are too small, they are behaving like control clones). The absence of GFP indicates that almost all the leg is clonal (yellow dashed-line) and positive for anti-1S signal. Scale bar= 100μm. On the close-up, scale bar= 20μm.

    Techniques Used: Knock-In, Immunostaining, Clone Assay, Staining, Mutagenesis, Generated

    (A) Anti-Dcp-1 antibody stains apoptotic cells (in red) in larval leg disc, that are present in the control leg disc ( Dll EM212 >RNAi luciferase ), specifically in the pretarsus, as often described. Depletion of pri by expressing UAS-RNAi pri under the control of Dll EM212 -Gal4 driver induces a dramatic increase in the number of apoptotic cells. Scale bar= 100μm. (B) Anti-Dcp-1 staining of leg disc where control and Ubr3 -/- MARCM clones are induced (the clones are GFP positive, in green). We observe a strong increase of Dcp-1 positive cells in Ubr3 -/- MARCM clones. Scale bar= 100μm. (C) Co-immunoprecipitation of Ubr3::V5 and DIAP1::GFP with or without Pri peptides. DIAP1::GFP and Ubr3::V5 are co-expressed in S2 cells with or without pri , and then co-immunoprecipitated with anti-GFP (left panel) or anti-V5 (right panel) antibodies. In the absence of pri , DIAP1 and Ubr3 co-interact barely. With Pri peptides, this interaction strongly increases.
    Figure Legend Snippet: (A) Anti-Dcp-1 antibody stains apoptotic cells (in red) in larval leg disc, that are present in the control leg disc ( Dll EM212 >RNAi luciferase ), specifically in the pretarsus, as often described. Depletion of pri by expressing UAS-RNAi pri under the control of Dll EM212 -Gal4 driver induces a dramatic increase in the number of apoptotic cells. Scale bar= 100μm. (B) Anti-Dcp-1 staining of leg disc where control and Ubr3 -/- MARCM clones are induced (the clones are GFP positive, in green). We observe a strong increase of Dcp-1 positive cells in Ubr3 -/- MARCM clones. Scale bar= 100μm. (C) Co-immunoprecipitation of Ubr3::V5 and DIAP1::GFP with or without Pri peptides. DIAP1::GFP and Ubr3::V5 are co-expressed in S2 cells with or without pri , and then co-immunoprecipitated with anti-GFP (left panel) or anti-V5 (right panel) antibodies. In the absence of pri , DIAP1 and Ubr3 co-interact barely. With Pri peptides, this interaction strongly increases.

    Techniques Used: Luciferase, Expressing, Staining, Clone Assay, Immunoprecipitation

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    Cell Signaling Technology Inc rabbit anti gfp
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    ( A ) Western blot of Triton-soluble lysate (left lanes) and YFP-PKCβII immunoprecipitated from COS7 cells using <t>GFP-Trap</t> ® Agarose. Cells were pre-treated with 20 μM MG-132 for 3 hours followed by 30 min of 200 nM PDBu treatment prior to lysis. Blots were probed with <t>indicated</t> <t>antibodies.</t> ( B ) Quantification of PDBu-induced ubiquitination of immunoprecipitated PKCβII. Relative ubiquitination was determined (Ubiquitin / PKC) for immunoprecipitated samples and each condition was normalized to DMSO-treated control (1.0) to determine fold-increase in ubiquitination after PDBu stimulation. Data represent mean ± SEM from four independent experiments. ns = not significant, **** P < 0.0001 by two-way ANOVA and Šídák’s multiple comparisons test.
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    ( A ) IP of anti-HA with cell lysate from 293T cells transfected with HA-Plek2, followed by Western blot assays of indicated proteins. ( B ) Western blotting assays of indicated proteins from Cos-7 cells transfected with HA-Plek2. ( C ) Quantitative PCR analysis of AKT from Cos-7 cells transfected with HA-Plek2. ( D ) Western blotting assays of indicated proteins from HEL cells transfected with Flag-Plek2. ( E <t>)</t> <t>GST</t> pull-down assay using GST or GST-Plek2 with a recombinant Akt. Akt was detected by a Western blotting assay. GST and GST-Plek2 were revealed using Coomassie stain. ( F ) Same as E , except GST-Plek2 DEP was used. ( G ) GST pull-down assay of GST or GST-Plek2 incubated with cell lysis from 293T cells. Indicated proteins were detected by Western blotting. ( H ) Bead-conjugated streptavidin pull-down of 293T cells transfected with BirA-Plek2 and incubated with biotin (50 μM). A Western blotting assay of the indicated proteins was performed after SDS-PAGE. ( I ) Western blotting analyses of the indicated proteins in 293T cells transfected with <t>GFP</t> fusion Hsp72 and HA-GST-Akt. ( J ) IP of Flag tag with cell lysate from 293T cells transfected with Flag-Plek2 followed by a Western blotting assay of indicated proteins.
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    a Strategy for the generation of Ara and Arb KI medaka strains. We designed a gRNA targeting ara intron 8 and arb intron 7 (the last intron). In the donor plasmids, we cloned a genomic fragment beginning from the end of exon 8 of ara and exon 7 of arb and ending just before the stop codon in the last exon, exon 9 of ara , and exon 8 (shown as black closed boxes with ‘E8’) of arb , where the 3xFLAG sequences (shown as blue boxes) and a P2A (2A peptide from porcine teschovirus-1)-mClover3 cassette (shown as green boxes) was placed in the frame. Thus, endogenous Ara and Arb were expressed as FLAG fusion proteins. Both AR-FLAG and P2A-mClover3 were expected to be expressed under the control of the endogenous Ar promoter. To generate KI medaka, sgRNA (for genome digestion in the final intron), donor plasmid, and Cas9 mRNA were co-injected into one-cell-stage medaka embryos. After injection, concurrent cleavage of the targeted genomic locus and the donor plasmid resulted in the integration of donor plasmid DNA containing 3xFLAG-T2A-mClover3 by non-homologous end joining (NHEJ). The scheme shows the forward integration of 3xFLAG-T2A-mClover3. b Expression of mClover3 in adult males of the two knock-in medaka strains, ara FLAG-2A-mClover3 (Ara-KI) and arb FLAG-2A-mClover3 (Arb-KI). White, grey, and red arrows indicate the regions adjacent to pectoral, dorsal, and anal fins, respectively (Ara-KI). White, grey, and red arrows indicate the pectoral, dorsal, and anal fins, respectively (Arb-KI). c Immunohistochemical detection of FLAG-tagged endogenous Ara and Arb in longitudinal sections of papillary processes of the anal fin (6 μm thickness). The merged images represent red fluorescence for immunostaining of FLAG (anti-DDDDK-tag mouse mAb monoclonal antibody), green fluorescence for immunostaining of <t>mClover3</t> <t>(anti-GFP</t> <t>D5.1XP</t> rabbit mAb monoclonal antibody), and blue fluorescence for nuclear staining by DAPI. The medaka Arb-FLAG, but not Ara-FLAG, translocated into the nuclei of cells located in the distal tip of a bone nodule of papillary processes (marked by white arrows). d Representative micrographs of Masson/trichrome staining and immunohistochemical detection of FLAG-tagged endogenous Ara and Arb in adjacent sections of the urogenital region (8 μm thickness). Nuclear localisation of Ara-FLAG and Arb-FLAG was observed in the medulla ventral to the sperm duct, where ar DKO exhibited hyperplasia. e, f Representative micrographs showing immunohistochemical detection of FLAG-tagged endogenous Ara and Arb, and DAPI counterstaining in the brain (12 μm thickness). f shows a higher magnification of the POA. Nuclear localisation of both Ara-FLAG and Arb-FLAG was observed in the POA. n = 6 for Ara-KI and Arb-KI males, respectively.
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    (A) Chlamydomonas expressing <t>KAP-GFP.</t> Indicated are the measured areas of KAP-GFP localization: the two basal bodies and cilia. Scale bar is 5 μm. (B) Super plot quantification of basal body fluorescence in (A) after a 2-h treatment with BCI at the indicated concentrations. Error bars are the mean with the 95% confidence interval for the averages from the trials. P = 0.5126, which was determined by an ordinary one-way ANOVA. (C) Ciliary length plotted against ciliary fluorescence for cells in DMSO (orange circles) or 30 μM BCI (purple) after a 2-h treatment (n = 40, N = 1). Simple linear regression was used to generate linear regression lines and comparisons. For DMSO, y = 0.1171x + 0.4305 and r 2 = 0.05676. For BCI, y = 0.1174x + 0.4051 and r 2 = 0.2636. Comparing slopes, F = 4.048e-006 (1, 76) and P = 0.9984. Comparing intercepts, F = 0.005429 (1, 77) and P = 0.9415. (D) Comparison of total ciliary fluorescence shown in (C). P -values were determined using a t test. (E) Comparisons of ciliary fluorescence in DMSO or BCI per micrometer of cilia in (C). P -values were determined using a t test. (F) Example kymographs collected from total internal reflection fluorescent microscopy of KAP-GFP movement in cilia in cells treated with DMSO (top) or 30 μM BCI (bottom) for 2 h. Vertical scale bars are 4 μm. Horizontal scale bars are 2 s. (G, H, I) KAP-GFP dynamics quantified from the kymographs (n = 20, N = 1). Error bars are the mean with the 95% confidence interval (n = 20, N = 1). P -values were calculated from a two-tailed unpaired t test for pairwise comparisons. (G) Frequency of KAP-GFP trains measured as the total amount of trains counted over the total amount of time the kymograph was collected. For DMSO, n = 40 (1 and 2 h). For BCI, n = 30 (1 h) and 34 (2 h). (H) Velocity of KAP-GFP trains measured as the distance traveled in μm over time in seconds. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). (I) Relative injection size of KAP-GFP trains measured as the relative total fluorescent intensity of each train relative to the maximum measurement. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). P -values were determined using a t test.
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    (A) Chlamydomonas <t>expressing</t> <t>KAP-GFP.</t> Indicated are the measured areas of KAP-GFP localization: the two basal bodies and cilia. Scale bar is 5 μm. (B) Super plot quantification of basal body fluorescence in (A) after a 2-h treatment with BCI at the indicated concentrations. Error bars are the mean with the 95% confidence interval for the averages from the trials. P = 0.5126, which was determined by an ordinary one-way ANOVA. (C) Ciliary length plotted against ciliary fluorescence for cells in DMSO (orange circles) or 30 μM BCI (purple) after a 2-h treatment (n = 40, N = 1). Simple linear regression was used to generate linear regression lines and comparisons. For DMSO, y = 0.1171x + 0.4305 and r 2 = 0.05676. For BCI, y = 0.1174x + 0.4051 and r 2 = 0.2636. Comparing slopes, F = 4.048e-006 (1, 76) and P = 0.9984. Comparing intercepts, F = 0.005429 (1, 77) and P = 0.9415. (D) Comparison of total ciliary fluorescence shown in (C). P -values were determined using a t test. (E) Comparisons of ciliary fluorescence in DMSO or BCI per micrometer of cilia in (C). P -values were determined using a t test. (F) Example kymographs collected from total internal reflection fluorescent microscopy of KAP-GFP movement in cilia in cells treated with DMSO (top) or 30 μM BCI (bottom) for 2 h. Vertical scale bars are 4 μm. Horizontal scale bars are 2 s. (G, H, I) KAP-GFP dynamics quantified from the kymographs (n = 20, N = 1). Error bars are the mean with the 95% confidence interval (n = 20, N = 1). P -values were calculated from a two-tailed unpaired t test for pairwise comparisons. (G) Frequency of KAP-GFP trains measured as the total amount of trains counted over the total amount of time the kymograph was collected. For DMSO, n = 40 (1 and 2 h). For BCI, n = 30 (1 h) and 34 (2 h). (H) Velocity of KAP-GFP trains measured as the distance traveled in μm over time in seconds. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). (I) Relative injection size of KAP-GFP trains measured as the relative total fluorescent intensity of each train relative to the maximum measurement. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). P -values were determined using a t test.
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    (A) SNAIL EMT-TF upregulation in FLASH KD cells was determined by qPCR at mRNA level and Western blot analysis at protein level. (B) Hybrid EMT phenotype in FLASH-depleted cells as evidenced by distinct expression patterns of ECAD, SNAIL and ZEB1 (left panel). Overexpression of either ZEB1 (ZEB1-Myc), FLASH <t>(FLASH-GFP)</t> or SNAIL (SNAIL-Flag) inhibits E-cadherin expression (ECAD) in cancer cells (right panel). (C) Scatter plots of SNAIL <t>and</t> <t>SLUG</t> levels and the Mesenchymal score in TGFβ-treated and untreated FLASH, NPAT and SLBT-depleted cells. Spearman’s correlation coefficient (ρ) and corresponding p-value ( p ) are reported. Two independent experiments were used for the analysis. (D) Heat map analysis of mesenchymal genes altered in FLASH, NPAT and SLBT-depleted cell under no treatment (left panel) and TGFβ-treated conditions (right panel). (E) Mesenchymal markers ACTA2 and POSTN expression was determined by qPCR at mRNA level in WT, SNAIL KO and SLUG KO in control cells and FLASH-depleted cells. The significance of differences was confirmed by Student t test for silencing efficiency (*, p < 0.05; **, p < 0.01).
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    Celastrol induced 3T3-L1 preadipocytes apoptosis through inhibition of autophagy (A) , Real-time qPCR of genes were studied in 3T3-L1 preadipocytes after 0, 2 and 4 μM celastrol treatment for 16 h ( n = 6) (B) , Western blotting of P62 and <t>LC3</t> I/II were developed in 3T3-L1 preadipocytes after 0, 1 and 2 μM celastrol treatment for 24 h ( n = 3) (C) , Western blotting of P62 and LC3 I/II were developed in preadipocytes after 2 μM celastrol treatment for 24 h with or without 15 μM rapamycin, 40 μM chloroquine or 200 nM bafilomycin A1 ( n = 3) (D) , Autophagosome degradation was observed with <t>RFP-GFP-LC3</t> <t>adeno-associated</t> virus, after 24 h treatment of 1 μM celastrol, 40 μM chloroquine or 15 μM rapamycin, respectively ( n = 7). Red fluorescence represented normal autophagosome degradation, while yellow represented halt of degradation (E–F) , 3T3-L1 preadipocytes were treated with 24 h of celastrol, 15 μM rapamycin, 40 μM chloroquine, 200 nM bafilomycin A1, celastrol + 15 μM rapamycin, celastrol + 40 μM chloroquine or celastrol + 200 nM bafilomycin A1, respectively, and subjected to flow cytometry analysis (E) ( n = 7) and Western blotting of cleaved-Caspase3 (F) ( n = 3). Protein expression was calculated relative to β -actin and depicted at the top of each blot. Error bars represent SEM; * p < 0.05; ** p < 0.01; *** p < 0.001. Veh, vehicle; Cela, celastrol; 1C, 1 μM celastrol; 2C, 2 μM celastrol; BafA1, bafilomycin A1; CQ, chloroquine; Rapa, rapamycin; Cas 3, Caspase 3.
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    ( A ) Western blot of Triton-soluble lysate (left lanes) and YFP-PKCβII immunoprecipitated from COS7 cells using GFP-Trap ® Agarose. Cells were pre-treated with 20 μM MG-132 for 3 hours followed by 30 min of 200 nM PDBu treatment prior to lysis. Blots were probed with indicated antibodies. ( B ) Quantification of PDBu-induced ubiquitination of immunoprecipitated PKCβII. Relative ubiquitination was determined (Ubiquitin / PKC) for immunoprecipitated samples and each condition was normalized to DMSO-treated control (1.0) to determine fold-increase in ubiquitination after PDBu stimulation. Data represent mean ± SEM from four independent experiments. ns = not significant, **** P < 0.0001 by two-way ANOVA and Šídák’s multiple comparisons test.

    Journal: bioRxiv

    Article Title: Single-residue mutation in protein kinase C toggles between cancer and neurodegeneration

    doi: 10.1101/2023.03.16.532226

    Figure Lengend Snippet: ( A ) Western blot of Triton-soluble lysate (left lanes) and YFP-PKCβII immunoprecipitated from COS7 cells using GFP-Trap ® Agarose. Cells were pre-treated with 20 μM MG-132 for 3 hours followed by 30 min of 200 nM PDBu treatment prior to lysis. Blots were probed with indicated antibodies. ( B ) Quantification of PDBu-induced ubiquitination of immunoprecipitated PKCβII. Relative ubiquitination was determined (Ubiquitin / PKC) for immunoprecipitated samples and each condition was normalized to DMSO-treated control (1.0) to determine fold-increase in ubiquitination after PDBu stimulation. Data represent mean ± SEM from four independent experiments. ns = not significant, **** P < 0.0001 by two-way ANOVA and Šídák’s multiple comparisons test.

    Article Snippet: Antibodies against GFP (catalog no. 2555S), Vinculin (catalog no. 4650S), Ubiquitin (catalog no. 3933S), and GAPDH (14C10, catalog no. 2118) were from Cell Signaling Technologies and used at 1:1000 dilution.

    Techniques: Western Blot, Immunoprecipitation, Lysis

    ( A ) IP of anti-HA with cell lysate from 293T cells transfected with HA-Plek2, followed by Western blot assays of indicated proteins. ( B ) Western blotting assays of indicated proteins from Cos-7 cells transfected with HA-Plek2. ( C ) Quantitative PCR analysis of AKT from Cos-7 cells transfected with HA-Plek2. ( D ) Western blotting assays of indicated proteins from HEL cells transfected with Flag-Plek2. ( E ) GST pull-down assay using GST or GST-Plek2 with a recombinant Akt. Akt was detected by a Western blotting assay. GST and GST-Plek2 were revealed using Coomassie stain. ( F ) Same as E , except GST-Plek2 DEP was used. ( G ) GST pull-down assay of GST or GST-Plek2 incubated with cell lysis from 293T cells. Indicated proteins were detected by Western blotting. ( H ) Bead-conjugated streptavidin pull-down of 293T cells transfected with BirA-Plek2 and incubated with biotin (50 μM). A Western blotting assay of the indicated proteins was performed after SDS-PAGE. ( I ) Western blotting analyses of the indicated proteins in 293T cells transfected with GFP fusion Hsp72 and HA-GST-Akt. ( J ) IP of Flag tag with cell lysate from 293T cells transfected with Flag-Plek2 followed by a Western blotting assay of indicated proteins.

    Journal: The Journal of Clinical Investigation

    Article Title: Targeting pleckstrin-2/Akt signaling reduces proliferation in myeloproliferative neoplasm models

    doi: 10.1172/JCI159638

    Figure Lengend Snippet: ( A ) IP of anti-HA with cell lysate from 293T cells transfected with HA-Plek2, followed by Western blot assays of indicated proteins. ( B ) Western blotting assays of indicated proteins from Cos-7 cells transfected with HA-Plek2. ( C ) Quantitative PCR analysis of AKT from Cos-7 cells transfected with HA-Plek2. ( D ) Western blotting assays of indicated proteins from HEL cells transfected with Flag-Plek2. ( E ) GST pull-down assay using GST or GST-Plek2 with a recombinant Akt. Akt was detected by a Western blotting assay. GST and GST-Plek2 were revealed using Coomassie stain. ( F ) Same as E , except GST-Plek2 DEP was used. ( G ) GST pull-down assay of GST or GST-Plek2 incubated with cell lysis from 293T cells. Indicated proteins were detected by Western blotting. ( H ) Bead-conjugated streptavidin pull-down of 293T cells transfected with BirA-Plek2 and incubated with biotin (50 μM). A Western blotting assay of the indicated proteins was performed after SDS-PAGE. ( I ) Western blotting analyses of the indicated proteins in 293T cells transfected with GFP fusion Hsp72 and HA-GST-Akt. ( J ) IP of Flag tag with cell lysate from 293T cells transfected with Flag-Plek2 followed by a Western blotting assay of indicated proteins.

    Article Snippet: For Western blotting, the following antibodies were used: anti-HSC70 (catalog sc-7298) (Santa Cruz Biotechnology Inc.); anti-Pten (catalog 9559), anti-total AKT (catalog 4691), anti-phospho AKT (catalog 4060), anti-total S6 (catalog 2217), anti-phospho S6 (catalog 4858), anti-phospho GSK3b(catalog 5558), anti-mTOR (catalog 2972), anti-GFP (catalog 2956), anti-GST (catalog 2622), anti-Flag (catalog 8146), and anti-HA (catalog 3724) (Cell Signaling Technology); anti-Plek2 (catalog 11685-1-AP) and anti-PDK2 (catalog 15647-1-AP) (Proteintech); anti-Hsp72 (catalog PA5-34772) (Invitrogen); and HRP linked anti-GST antibody (catalog MA4-004-HRP) (Thermo Fisher Scientific).

    Techniques: Transfection, Western Blot, Real-time Polymerase Chain Reaction, Pull Down Assay, Recombinant, Staining, Incubation, Lysis, SDS Page, FLAG-tag

    a Strategy for the generation of Ara and Arb KI medaka strains. We designed a gRNA targeting ara intron 8 and arb intron 7 (the last intron). In the donor plasmids, we cloned a genomic fragment beginning from the end of exon 8 of ara and exon 7 of arb and ending just before the stop codon in the last exon, exon 9 of ara , and exon 8 (shown as black closed boxes with ‘E8’) of arb , where the 3xFLAG sequences (shown as blue boxes) and a P2A (2A peptide from porcine teschovirus-1)-mClover3 cassette (shown as green boxes) was placed in the frame. Thus, endogenous Ara and Arb were expressed as FLAG fusion proteins. Both AR-FLAG and P2A-mClover3 were expected to be expressed under the control of the endogenous Ar promoter. To generate KI medaka, sgRNA (for genome digestion in the final intron), donor plasmid, and Cas9 mRNA were co-injected into one-cell-stage medaka embryos. After injection, concurrent cleavage of the targeted genomic locus and the donor plasmid resulted in the integration of donor plasmid DNA containing 3xFLAG-T2A-mClover3 by non-homologous end joining (NHEJ). The scheme shows the forward integration of 3xFLAG-T2A-mClover3. b Expression of mClover3 in adult males of the two knock-in medaka strains, ara FLAG-2A-mClover3 (Ara-KI) and arb FLAG-2A-mClover3 (Arb-KI). White, grey, and red arrows indicate the regions adjacent to pectoral, dorsal, and anal fins, respectively (Ara-KI). White, grey, and red arrows indicate the pectoral, dorsal, and anal fins, respectively (Arb-KI). c Immunohistochemical detection of FLAG-tagged endogenous Ara and Arb in longitudinal sections of papillary processes of the anal fin (6 μm thickness). The merged images represent red fluorescence for immunostaining of FLAG (anti-DDDDK-tag mouse mAb monoclonal antibody), green fluorescence for immunostaining of mClover3 (anti-GFP D5.1XP rabbit mAb monoclonal antibody), and blue fluorescence for nuclear staining by DAPI. The medaka Arb-FLAG, but not Ara-FLAG, translocated into the nuclei of cells located in the distal tip of a bone nodule of papillary processes (marked by white arrows). d Representative micrographs of Masson/trichrome staining and immunohistochemical detection of FLAG-tagged endogenous Ara and Arb in adjacent sections of the urogenital region (8 μm thickness). Nuclear localisation of Ara-FLAG and Arb-FLAG was observed in the medulla ventral to the sperm duct, where ar DKO exhibited hyperplasia. e, f Representative micrographs showing immunohistochemical detection of FLAG-tagged endogenous Ara and Arb, and DAPI counterstaining in the brain (12 μm thickness). f shows a higher magnification of the POA. Nuclear localisation of both Ara-FLAG and Arb-FLAG was observed in the POA. n = 6 for Ara-KI and Arb-KI males, respectively.

    Journal: Nature Communications

    Article Title: Evolutionary differentiation of androgen receptor is responsible for sexual characteristic development in a teleost fish

    doi: 10.1038/s41467-023-37026-6

    Figure Lengend Snippet: a Strategy for the generation of Ara and Arb KI medaka strains. We designed a gRNA targeting ara intron 8 and arb intron 7 (the last intron). In the donor plasmids, we cloned a genomic fragment beginning from the end of exon 8 of ara and exon 7 of arb and ending just before the stop codon in the last exon, exon 9 of ara , and exon 8 (shown as black closed boxes with ‘E8’) of arb , where the 3xFLAG sequences (shown as blue boxes) and a P2A (2A peptide from porcine teschovirus-1)-mClover3 cassette (shown as green boxes) was placed in the frame. Thus, endogenous Ara and Arb were expressed as FLAG fusion proteins. Both AR-FLAG and P2A-mClover3 were expected to be expressed under the control of the endogenous Ar promoter. To generate KI medaka, sgRNA (for genome digestion in the final intron), donor plasmid, and Cas9 mRNA were co-injected into one-cell-stage medaka embryos. After injection, concurrent cleavage of the targeted genomic locus and the donor plasmid resulted in the integration of donor plasmid DNA containing 3xFLAG-T2A-mClover3 by non-homologous end joining (NHEJ). The scheme shows the forward integration of 3xFLAG-T2A-mClover3. b Expression of mClover3 in adult males of the two knock-in medaka strains, ara FLAG-2A-mClover3 (Ara-KI) and arb FLAG-2A-mClover3 (Arb-KI). White, grey, and red arrows indicate the regions adjacent to pectoral, dorsal, and anal fins, respectively (Ara-KI). White, grey, and red arrows indicate the pectoral, dorsal, and anal fins, respectively (Arb-KI). c Immunohistochemical detection of FLAG-tagged endogenous Ara and Arb in longitudinal sections of papillary processes of the anal fin (6 μm thickness). The merged images represent red fluorescence for immunostaining of FLAG (anti-DDDDK-tag mouse mAb monoclonal antibody), green fluorescence for immunostaining of mClover3 (anti-GFP D5.1XP rabbit mAb monoclonal antibody), and blue fluorescence for nuclear staining by DAPI. The medaka Arb-FLAG, but not Ara-FLAG, translocated into the nuclei of cells located in the distal tip of a bone nodule of papillary processes (marked by white arrows). d Representative micrographs of Masson/trichrome staining and immunohistochemical detection of FLAG-tagged endogenous Ara and Arb in adjacent sections of the urogenital region (8 μm thickness). Nuclear localisation of Ara-FLAG and Arb-FLAG was observed in the medulla ventral to the sperm duct, where ar DKO exhibited hyperplasia. e, f Representative micrographs showing immunohistochemical detection of FLAG-tagged endogenous Ara and Arb, and DAPI counterstaining in the brain (12 μm thickness). f shows a higher magnification of the POA. Nuclear localisation of both Ara-FLAG and Arb-FLAG was observed in the POA. n = 6 for Ara-KI and Arb-KI males, respectively.

    Article Snippet: Briefly, after antigen retrieval by incubating slides in 0.1 mM citrate buffer (pH 6.0) in an autoclave (121 °C) for 1 min, the sections were blocked for 1 h using 1xPBS containing 0.1% Tween 20, 2% BSA, and 2% foetal bovine serum, and incubated with anti-DDDDK-tag (FLAG) mouse mAb monoclonal antibody (M185-3L, MBL, Nagoya, Japan, 1:300 dilution) and anti-GFP D5.1XP rabbit mAb monoclonal antibody having cross-reactivity to the mClover3 (#2956, Cell Signaling, Danvers, MA, USA, 1:300 dilution) overnight at 4 °C.

    Techniques: Clone Assay, Plasmid Preparation, Injection, Non-Homologous End Joining, Expressing, Knock-In, Immunohistochemical staining, Fluorescence, Immunostaining, Staining

    (A) Chlamydomonas expressing KAP-GFP. Indicated are the measured areas of KAP-GFP localization: the two basal bodies and cilia. Scale bar is 5 μm. (B) Super plot quantification of basal body fluorescence in (A) after a 2-h treatment with BCI at the indicated concentrations. Error bars are the mean with the 95% confidence interval for the averages from the trials. P = 0.5126, which was determined by an ordinary one-way ANOVA. (C) Ciliary length plotted against ciliary fluorescence for cells in DMSO (orange circles) or 30 μM BCI (purple) after a 2-h treatment (n = 40, N = 1). Simple linear regression was used to generate linear regression lines and comparisons. For DMSO, y = 0.1171x + 0.4305 and r 2 = 0.05676. For BCI, y = 0.1174x + 0.4051 and r 2 = 0.2636. Comparing slopes, F = 4.048e-006 (1, 76) and P = 0.9984. Comparing intercepts, F = 0.005429 (1, 77) and P = 0.9415. (D) Comparison of total ciliary fluorescence shown in (C). P -values were determined using a t test. (E) Comparisons of ciliary fluorescence in DMSO or BCI per micrometer of cilia in (C). P -values were determined using a t test. (F) Example kymographs collected from total internal reflection fluorescent microscopy of KAP-GFP movement in cilia in cells treated with DMSO (top) or 30 μM BCI (bottom) for 2 h. Vertical scale bars are 4 μm. Horizontal scale bars are 2 s. (G, H, I) KAP-GFP dynamics quantified from the kymographs (n = 20, N = 1). Error bars are the mean with the 95% confidence interval (n = 20, N = 1). P -values were calculated from a two-tailed unpaired t test for pairwise comparisons. (G) Frequency of KAP-GFP trains measured as the total amount of trains counted over the total amount of time the kymograph was collected. For DMSO, n = 40 (1 and 2 h). For BCI, n = 30 (1 h) and 34 (2 h). (H) Velocity of KAP-GFP trains measured as the distance traveled in μm over time in seconds. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). (I) Relative injection size of KAP-GFP trains measured as the relative total fluorescent intensity of each train relative to the maximum measurement. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). P -values were determined using a t test.

    Journal: Life Science Alliance

    Article Title: The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement

    doi: 10.26508/lsa.202301899

    Figure Lengend Snippet: (A) Chlamydomonas expressing KAP-GFP. Indicated are the measured areas of KAP-GFP localization: the two basal bodies and cilia. Scale bar is 5 μm. (B) Super plot quantification of basal body fluorescence in (A) after a 2-h treatment with BCI at the indicated concentrations. Error bars are the mean with the 95% confidence interval for the averages from the trials. P = 0.5126, which was determined by an ordinary one-way ANOVA. (C) Ciliary length plotted against ciliary fluorescence for cells in DMSO (orange circles) or 30 μM BCI (purple) after a 2-h treatment (n = 40, N = 1). Simple linear regression was used to generate linear regression lines and comparisons. For DMSO, y = 0.1171x + 0.4305 and r 2 = 0.05676. For BCI, y = 0.1174x + 0.4051 and r 2 = 0.2636. Comparing slopes, F = 4.048e-006 (1, 76) and P = 0.9984. Comparing intercepts, F = 0.005429 (1, 77) and P = 0.9415. (D) Comparison of total ciliary fluorescence shown in (C). P -values were determined using a t test. (E) Comparisons of ciliary fluorescence in DMSO or BCI per micrometer of cilia in (C). P -values were determined using a t test. (F) Example kymographs collected from total internal reflection fluorescent microscopy of KAP-GFP movement in cilia in cells treated with DMSO (top) or 30 μM BCI (bottom) for 2 h. Vertical scale bars are 4 μm. Horizontal scale bars are 2 s. (G, H, I) KAP-GFP dynamics quantified from the kymographs (n = 20, N = 1). Error bars are the mean with the 95% confidence interval (n = 20, N = 1). P -values were calculated from a two-tailed unpaired t test for pairwise comparisons. (G) Frequency of KAP-GFP trains measured as the total amount of trains counted over the total amount of time the kymograph was collected. For DMSO, n = 40 (1 and 2 h). For BCI, n = 30 (1 h) and 34 (2 h). (H) Velocity of KAP-GFP trains measured as the distance traveled in μm over time in seconds. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). (I) Relative injection size of KAP-GFP trains measured as the relative total fluorescent intensity of each train relative to the maximum measurement. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). P -values were determined using a t test.

    Article Snippet: To probe for KAP-GFP, blots were incubated with 5% milk and then probed with GFP antibody (1956S; CST) diluted at 1:1,000 in 1% milk + 1% BSA overnight at 4°C.

    Techniques: Expressing, Fluorescence, Microscopy, Two Tailed Test, Injection

    (A) Immunofluorescent images of KAP-GFP cells during regeneration in either DMSO or 30 μM BCI. Scale bars are 5 μm. Red arrows point to basal bodies, which are the object of quantification in (D). (B) Western blot for KAP-GFP expression in regenerating cells in either DMSO (D) or 30 μM BCI (B). Total protein was measured with amido black. (C) Quantification of (B). Error bars are the mean with SD for three independent experiments. P -values were calculated using an ordinary one-way ANOVA with Dunnett’s multiple comparisons test. (D) Quantification of KAP-GFP fluorescence at the basal bodies in (A). Error bars are the mean with the 95% confidence interval for the averages from three independent trials (n = 30, N = 3). The P -value was calculated using an unpaired t test with Welch’s correction.

    Journal: Life Science Alliance

    Article Title: The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement

    doi: 10.26508/lsa.202301899

    Figure Lengend Snippet: (A) Immunofluorescent images of KAP-GFP cells during regeneration in either DMSO or 30 μM BCI. Scale bars are 5 μm. Red arrows point to basal bodies, which are the object of quantification in (D). (B) Western blot for KAP-GFP expression in regenerating cells in either DMSO (D) or 30 μM BCI (B). Total protein was measured with amido black. (C) Quantification of (B). Error bars are the mean with SD for three independent experiments. P -values were calculated using an ordinary one-way ANOVA with Dunnett’s multiple comparisons test. (D) Quantification of KAP-GFP fluorescence at the basal bodies in (A). Error bars are the mean with the 95% confidence interval for the averages from three independent trials (n = 30, N = 3). The P -value was calculated using an unpaired t test with Welch’s correction.

    Article Snippet: To probe for KAP-GFP, blots were incubated with 5% milk and then probed with GFP antibody (1956S; CST) diluted at 1:1,000 in 1% milk + 1% BSA overnight at 4°C.

    Techniques: Western Blot, Expressing, Fluorescence

    (A) Western blot of KAP-GFP expression compared with total protein shown with amido black. Cells were treated for 2 h with either 0.5% DMSO, 20 μM BCI, 50 μM MG132, or both 50 μM MG132 and 20 μM BCI. (A, B) Quantification of (A). Error bars are SD of the mean (N = 3). The P -value was determined by an unpaired t test between BCI and BCI + MG132.

    Journal: Life Science Alliance

    Article Title: The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement

    doi: 10.26508/lsa.202301899

    Figure Lengend Snippet: (A) Western blot of KAP-GFP expression compared with total protein shown with amido black. Cells were treated for 2 h with either 0.5% DMSO, 20 μM BCI, 50 μM MG132, or both 50 μM MG132 and 20 μM BCI. (A, B) Quantification of (A). Error bars are SD of the mean (N = 3). The P -value was determined by an unpaired t test between BCI and BCI + MG132.

    Article Snippet: To probe for KAP-GFP, blots were incubated with 5% milk and then probed with GFP antibody (1956S; CST) diluted at 1:1,000 in 1% milk + 1% BSA overnight at 4°C.

    Techniques: Western Blot, Expressing

    BCI inhibits phosphate removal from MAPK. This ultimately alters or inhibits ciliogenesis, KAP-GFP dynamics in cilia, KAP-GFP protein synthesis, NPHP4 protein localization at the transition zone, membrane trafficking, and microtubule organization.

    Journal: Life Science Alliance

    Article Title: The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement

    doi: 10.26508/lsa.202301899

    Figure Lengend Snippet: BCI inhibits phosphate removal from MAPK. This ultimately alters or inhibits ciliogenesis, KAP-GFP dynamics in cilia, KAP-GFP protein synthesis, NPHP4 protein localization at the transition zone, membrane trafficking, and microtubule organization.

    Article Snippet: To probe for KAP-GFP, blots were incubated with 5% milk and then probed with GFP antibody (1956S; CST) diluted at 1:1,000 in 1% milk + 1% BSA overnight at 4°C.

    Techniques:

    Tools and reagents.

    Journal: Life Science Alliance

    Article Title: The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement

    doi: 10.26508/lsa.202301899

    Figure Lengend Snippet: Tools and reagents.

    Article Snippet: To probe for KAP-GFP, blots were incubated with 5% milk and then probed with GFP antibody (1956S; CST) diluted at 1:1,000 in 1% milk + 1% BSA overnight at 4°C.

    Techniques: Staining, Mutagenesis

    Tools and reagents.

    Journal: Life Science Alliance

    Article Title: The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement

    doi: 10.26508/lsa.202301899

    Figure Lengend Snippet: Tools and reagents.

    Article Snippet: GFP (D5.1) rabbit mAb , Cell Signaling Technology , 2956S.

    Techniques: Staining, Mutagenesis

    (A) Chlamydomonas expressing KAP-GFP. Indicated are the measured areas of KAP-GFP localization: the two basal bodies and cilia. Scale bar is 5 μm. (B) Super plot quantification of basal body fluorescence in (A) after a 2-h treatment with BCI at the indicated concentrations. Error bars are the mean with the 95% confidence interval for the averages from the trials. P = 0.5126, which was determined by an ordinary one-way ANOVA. (C) Ciliary length plotted against ciliary fluorescence for cells in DMSO (orange circles) or 30 μM BCI (purple) after a 2-h treatment (n = 40, N = 1). Simple linear regression was used to generate linear regression lines and comparisons. For DMSO, y = 0.1171x + 0.4305 and r 2 = 0.05676. For BCI, y = 0.1174x + 0.4051 and r 2 = 0.2636. Comparing slopes, F = 4.048e-006 (1, 76) and P = 0.9984. Comparing intercepts, F = 0.005429 (1, 77) and P = 0.9415. (D) Comparison of total ciliary fluorescence shown in (C). P -values were determined using a t test. (E) Comparisons of ciliary fluorescence in DMSO or BCI per micrometer of cilia in (C). P -values were determined using a t test. (F) Example kymographs collected from total internal reflection fluorescent microscopy of KAP-GFP movement in cilia in cells treated with DMSO (top) or 30 μM BCI (bottom) for 2 h. Vertical scale bars are 4 μm. Horizontal scale bars are 2 s. (G, H, I) KAP-GFP dynamics quantified from the kymographs (n = 20, N = 1). Error bars are the mean with the 95% confidence interval (n = 20, N = 1). P -values were calculated from a two-tailed unpaired t test for pairwise comparisons. (G) Frequency of KAP-GFP trains measured as the total amount of trains counted over the total amount of time the kymograph was collected. For DMSO, n = 40 (1 and 2 h). For BCI, n = 30 (1 h) and 34 (2 h). (H) Velocity of KAP-GFP trains measured as the distance traveled in μm over time in seconds. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). (I) Relative injection size of KAP-GFP trains measured as the relative total fluorescent intensity of each train relative to the maximum measurement. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). P -values were determined using a t test.

    Journal: Life Science Alliance

    Article Title: The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement

    doi: 10.26508/lsa.202301899

    Figure Lengend Snippet: (A) Chlamydomonas expressing KAP-GFP. Indicated are the measured areas of KAP-GFP localization: the two basal bodies and cilia. Scale bar is 5 μm. (B) Super plot quantification of basal body fluorescence in (A) after a 2-h treatment with BCI at the indicated concentrations. Error bars are the mean with the 95% confidence interval for the averages from the trials. P = 0.5126, which was determined by an ordinary one-way ANOVA. (C) Ciliary length plotted against ciliary fluorescence for cells in DMSO (orange circles) or 30 μM BCI (purple) after a 2-h treatment (n = 40, N = 1). Simple linear regression was used to generate linear regression lines and comparisons. For DMSO, y = 0.1171x + 0.4305 and r 2 = 0.05676. For BCI, y = 0.1174x + 0.4051 and r 2 = 0.2636. Comparing slopes, F = 4.048e-006 (1, 76) and P = 0.9984. Comparing intercepts, F = 0.005429 (1, 77) and P = 0.9415. (D) Comparison of total ciliary fluorescence shown in (C). P -values were determined using a t test. (E) Comparisons of ciliary fluorescence in DMSO or BCI per micrometer of cilia in (C). P -values were determined using a t test. (F) Example kymographs collected from total internal reflection fluorescent microscopy of KAP-GFP movement in cilia in cells treated with DMSO (top) or 30 μM BCI (bottom) for 2 h. Vertical scale bars are 4 μm. Horizontal scale bars are 2 s. (G, H, I) KAP-GFP dynamics quantified from the kymographs (n = 20, N = 1). Error bars are the mean with the 95% confidence interval (n = 20, N = 1). P -values were calculated from a two-tailed unpaired t test for pairwise comparisons. (G) Frequency of KAP-GFP trains measured as the total amount of trains counted over the total amount of time the kymograph was collected. For DMSO, n = 40 (1 and 2 h). For BCI, n = 30 (1 h) and 34 (2 h). (H) Velocity of KAP-GFP trains measured as the distance traveled in μm over time in seconds. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). (I) Relative injection size of KAP-GFP trains measured as the relative total fluorescent intensity of each train relative to the maximum measurement. For DMSO, n = 100 (1 and 2 h). For BCI, n = 93 (1 h) and 88 (2 h). P -values were determined using a t test.

    Article Snippet: To probe for KAP-GFP, blots were incubated with 5% milk and then probed with GFP antibody (1956S; CST) diluted at 1:1,000 in 1% milk + 1% BSA overnight at 4°C.

    Techniques: Expressing, Fluorescence, Microscopy, Two Tailed Test, Injection

    (A) Immunofluorescent images of KAP-GFP cells during regeneration in either DMSO or 30 μM BCI. Scale bars are 5 μm. Red arrows point to basal bodies, which are the object of quantification in (D). (B) Western blot for KAP-GFP expression in regenerating cells in either DMSO (D) or 30 μM BCI (B). Total protein was measured with amido black. (C) Quantification of (B). Error bars are the mean with SD for three independent experiments. P -values were calculated using an ordinary one-way ANOVA with Dunnett’s multiple comparisons test. (D) Quantification of KAP-GFP fluorescence at the basal bodies in (A). Error bars are the mean with the 95% confidence interval for the averages from three independent trials (n = 30, N = 3). The P -value was calculated using an unpaired t test with Welch’s correction.

    Journal: Life Science Alliance

    Article Title: The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement

    doi: 10.26508/lsa.202301899

    Figure Lengend Snippet: (A) Immunofluorescent images of KAP-GFP cells during regeneration in either DMSO or 30 μM BCI. Scale bars are 5 μm. Red arrows point to basal bodies, which are the object of quantification in (D). (B) Western blot for KAP-GFP expression in regenerating cells in either DMSO (D) or 30 μM BCI (B). Total protein was measured with amido black. (C) Quantification of (B). Error bars are the mean with SD for three independent experiments. P -values were calculated using an ordinary one-way ANOVA with Dunnett’s multiple comparisons test. (D) Quantification of KAP-GFP fluorescence at the basal bodies in (A). Error bars are the mean with the 95% confidence interval for the averages from three independent trials (n = 30, N = 3). The P -value was calculated using an unpaired t test with Welch’s correction.

    Article Snippet: To probe for KAP-GFP, blots were incubated with 5% milk and then probed with GFP antibody (1956S; CST) diluted at 1:1,000 in 1% milk + 1% BSA overnight at 4°C.

    Techniques: Western Blot, Expressing, Fluorescence

    (A) Western blot of KAP-GFP expression compared with total protein shown with amido black. Cells were treated for 2 h with either 0.5% DMSO, 20 μM BCI, 50 μM MG132, or both 50 μM MG132 and 20 μM BCI. (A, B) Quantification of (A). Error bars are SD of the mean (N = 3). The P -value was determined by an unpaired t test between BCI and BCI + MG132.

    Journal: Life Science Alliance

    Article Title: The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement

    doi: 10.26508/lsa.202301899

    Figure Lengend Snippet: (A) Western blot of KAP-GFP expression compared with total protein shown with amido black. Cells were treated for 2 h with either 0.5% DMSO, 20 μM BCI, 50 μM MG132, or both 50 μM MG132 and 20 μM BCI. (A, B) Quantification of (A). Error bars are SD of the mean (N = 3). The P -value was determined by an unpaired t test between BCI and BCI + MG132.

    Article Snippet: To probe for KAP-GFP, blots were incubated with 5% milk and then probed with GFP antibody (1956S; CST) diluted at 1:1,000 in 1% milk + 1% BSA overnight at 4°C.

    Techniques: Western Blot, Expressing

    BCI inhibits phosphate removal from MAPK. This ultimately alters or inhibits ciliogenesis, KAP-GFP dynamics in cilia, KAP-GFP protein synthesis, NPHP4 protein localization at the transition zone, membrane trafficking, and microtubule organization.

    Journal: Life Science Alliance

    Article Title: The ERK activator, BCI, inhibits ciliogenesis and causes defects in motor behavior, ciliary gating, and cytoskeletal rearrangement

    doi: 10.26508/lsa.202301899

    Figure Lengend Snippet: BCI inhibits phosphate removal from MAPK. This ultimately alters or inhibits ciliogenesis, KAP-GFP dynamics in cilia, KAP-GFP protein synthesis, NPHP4 protein localization at the transition zone, membrane trafficking, and microtubule organization.

    Article Snippet: To probe for KAP-GFP, blots were incubated with 5% milk and then probed with GFP antibody (1956S; CST) diluted at 1:1,000 in 1% milk + 1% BSA overnight at 4°C.

    Techniques:

    (A) SNAIL EMT-TF upregulation in FLASH KD cells was determined by qPCR at mRNA level and Western blot analysis at protein level. (B) Hybrid EMT phenotype in FLASH-depleted cells as evidenced by distinct expression patterns of ECAD, SNAIL and ZEB1 (left panel). Overexpression of either ZEB1 (ZEB1-Myc), FLASH (FLASH-GFP) or SNAIL (SNAIL-Flag) inhibits E-cadherin expression (ECAD) in cancer cells (right panel). (C) Scatter plots of SNAIL and SLUG levels and the Mesenchymal score in TGFβ-treated and untreated FLASH, NPAT and SLBT-depleted cells. Spearman’s correlation coefficient (ρ) and corresponding p-value ( p ) are reported. Two independent experiments were used for the analysis. (D) Heat map analysis of mesenchymal genes altered in FLASH, NPAT and SLBT-depleted cell under no treatment (left panel) and TGFβ-treated conditions (right panel). (E) Mesenchymal markers ACTA2 and POSTN expression was determined by qPCR at mRNA level in WT, SNAIL KO and SLUG KO in control cells and FLASH-depleted cells. The significance of differences was confirmed by Student t test for silencing efficiency (*, p < 0.05; **, p < 0.01).

    Journal: bioRxiv

    Article Title: Dual role of CASP8AP2/FLASH in regulating epithelial-to-mesenchymal (EMT) plasticity

    doi: 10.1101/2023.03.12.532282

    Figure Lengend Snippet: (A) SNAIL EMT-TF upregulation in FLASH KD cells was determined by qPCR at mRNA level and Western blot analysis at protein level. (B) Hybrid EMT phenotype in FLASH-depleted cells as evidenced by distinct expression patterns of ECAD, SNAIL and ZEB1 (left panel). Overexpression of either ZEB1 (ZEB1-Myc), FLASH (FLASH-GFP) or SNAIL (SNAIL-Flag) inhibits E-cadherin expression (ECAD) in cancer cells (right panel). (C) Scatter plots of SNAIL and SLUG levels and the Mesenchymal score in TGFβ-treated and untreated FLASH, NPAT and SLBT-depleted cells. Spearman’s correlation coefficient (ρ) and corresponding p-value ( p ) are reported. Two independent experiments were used for the analysis. (D) Heat map analysis of mesenchymal genes altered in FLASH, NPAT and SLBT-depleted cell under no treatment (left panel) and TGFβ-treated conditions (right panel). (E) Mesenchymal markers ACTA2 and POSTN expression was determined by qPCR at mRNA level in WT, SNAIL KO and SLUG KO in control cells and FLASH-depleted cells. The significance of differences was confirmed by Student t test for silencing efficiency (*, p < 0.05; **, p < 0.01).

    Article Snippet: The following antibodies were all purchased from Cell Signaling: FLASH (D3T8Q), ZEB1 (E2G6Y), SNAIL (C15D3), SLUG (C19G7), Claudin-6 (E7U20), LYRIC (D5Y8R), RUFY3 (61460S), PJA2 (40180S), GFP (D5.1), Myc (9B11), Histone H3 (D1H2) and Histone H4 (D2X4V).

    Techniques: Western Blot, Expressing, Over Expression

    Celastrol induced 3T3-L1 preadipocytes apoptosis through inhibition of autophagy (A) , Real-time qPCR of genes were studied in 3T3-L1 preadipocytes after 0, 2 and 4 μM celastrol treatment for 16 h ( n = 6) (B) , Western blotting of P62 and LC3 I/II were developed in 3T3-L1 preadipocytes after 0, 1 and 2 μM celastrol treatment for 24 h ( n = 3) (C) , Western blotting of P62 and LC3 I/II were developed in preadipocytes after 2 μM celastrol treatment for 24 h with or without 15 μM rapamycin, 40 μM chloroquine or 200 nM bafilomycin A1 ( n = 3) (D) , Autophagosome degradation was observed with RFP-GFP-LC3 adeno-associated virus, after 24 h treatment of 1 μM celastrol, 40 μM chloroquine or 15 μM rapamycin, respectively ( n = 7). Red fluorescence represented normal autophagosome degradation, while yellow represented halt of degradation (E–F) , 3T3-L1 preadipocytes were treated with 24 h of celastrol, 15 μM rapamycin, 40 μM chloroquine, 200 nM bafilomycin A1, celastrol + 15 μM rapamycin, celastrol + 40 μM chloroquine or celastrol + 200 nM bafilomycin A1, respectively, and subjected to flow cytometry analysis (E) ( n = 7) and Western blotting of cleaved-Caspase3 (F) ( n = 3). Protein expression was calculated relative to β -actin and depicted at the top of each blot. Error bars represent SEM; * p < 0.05; ** p < 0.01; *** p < 0.001. Veh, vehicle; Cela, celastrol; 1C, 1 μM celastrol; 2C, 2 μM celastrol; BafA1, bafilomycin A1; CQ, chloroquine; Rapa, rapamycin; Cas 3, Caspase 3.

    Journal: Frontiers in Pharmacology

    Article Title: Celastrol directly binds with VAMP7 and RAB7 to inhibit autophagy and induce apoptosis in preadipocytes

    doi: 10.3389/fphar.2023.1094584

    Figure Lengend Snippet: Celastrol induced 3T3-L1 preadipocytes apoptosis through inhibition of autophagy (A) , Real-time qPCR of genes were studied in 3T3-L1 preadipocytes after 0, 2 and 4 μM celastrol treatment for 16 h ( n = 6) (B) , Western blotting of P62 and LC3 I/II were developed in 3T3-L1 preadipocytes after 0, 1 and 2 μM celastrol treatment for 24 h ( n = 3) (C) , Western blotting of P62 and LC3 I/II were developed in preadipocytes after 2 μM celastrol treatment for 24 h with or without 15 μM rapamycin, 40 μM chloroquine or 200 nM bafilomycin A1 ( n = 3) (D) , Autophagosome degradation was observed with RFP-GFP-LC3 adeno-associated virus, after 24 h treatment of 1 μM celastrol, 40 μM chloroquine or 15 μM rapamycin, respectively ( n = 7). Red fluorescence represented normal autophagosome degradation, while yellow represented halt of degradation (E–F) , 3T3-L1 preadipocytes were treated with 24 h of celastrol, 15 μM rapamycin, 40 μM chloroquine, 200 nM bafilomycin A1, celastrol + 15 μM rapamycin, celastrol + 40 μM chloroquine or celastrol + 200 nM bafilomycin A1, respectively, and subjected to flow cytometry analysis (E) ( n = 7) and Western blotting of cleaved-Caspase3 (F) ( n = 3). Protein expression was calculated relative to β -actin and depicted at the top of each blot. Error bars represent SEM; * p < 0.05; ** p < 0.01; *** p < 0.001. Veh, vehicle; Cela, celastrol; 1C, 1 μM celastrol; 2C, 2 μM celastrol; BafA1, bafilomycin A1; CQ, chloroquine; Rapa, rapamycin; Cas 3, Caspase 3.

    Article Snippet: Preadipocytes infected with RFP-GFP-LC3 adeno-associated virus were treated with 1 μM celastrol, 40 μM chloroquine or 200 nM bafilomycin A1 for 24 h. Cells were fixed with 4% paraformaldehyde and blocked with 5% BSA, then subjected to primary antibody LAMP1 (Cell Signaling Technology, United States, Cat #9091, RRID:AB_2687579, 1:100 dilution) overnight, followed by incubation with Alexa Fluor 647-conjugated goat anti-rabbit IgG antibody (Abcam, United States, Cat # ab150079, RRID:AB_2722623, 1:500 dilution).

    Techniques: Inhibition, Western Blot, Fluorescence, Flow Cytometry, Expressing

    Celastrol inhibited the fusion of autophagosome and lysosome (A–B) , 3T3-L1 preadipocytes were treated with 24 h of 1 μM celastrol, 40 μM chloroquine or 200 nM bafilomycin A1, and subjected to LysoTracker red staining (A) ( n = 3) and immunofluorescence staining of LAMP1 and LC3 (B) . The representative images were shown on the left, and the Pearson correlation coefficient (PCC) for the colocalization of RFP-LC3 and Alexa Fluor 647-LAMP1 were presented on the upper right ( n = 3) (C) , 3T3-L1 preadipocytes were treated with 1 and 2 μM celastrol for 24 h and subjected to Western blotting of LAMP1 ( n = 3) (D) , 3T3-L1 preadipocytes were treated with 1, 2 μM celastrol and 40 μM chloroquine for 12 h and subjected to electron microscopy ( n = 5) (E) , 3T3-L1 adipocytes were treated with 1 and 2 μM celastrol for 24 h and subjected to Western blotting of P62 and LC3 I/II ( n = 3). Protein expression was calculated relative to β -actin or GAPDH and depicted at the top of each blot. Error bars represent SEM. Veh, vehicle; Cela, celastrol; CQ, chloroquine; BafA1, bafilomycin A1; AP, autophagosome.

    Journal: Frontiers in Pharmacology

    Article Title: Celastrol directly binds with VAMP7 and RAB7 to inhibit autophagy and induce apoptosis in preadipocytes

    doi: 10.3389/fphar.2023.1094584

    Figure Lengend Snippet: Celastrol inhibited the fusion of autophagosome and lysosome (A–B) , 3T3-L1 preadipocytes were treated with 24 h of 1 μM celastrol, 40 μM chloroquine or 200 nM bafilomycin A1, and subjected to LysoTracker red staining (A) ( n = 3) and immunofluorescence staining of LAMP1 and LC3 (B) . The representative images were shown on the left, and the Pearson correlation coefficient (PCC) for the colocalization of RFP-LC3 and Alexa Fluor 647-LAMP1 were presented on the upper right ( n = 3) (C) , 3T3-L1 preadipocytes were treated with 1 and 2 μM celastrol for 24 h and subjected to Western blotting of LAMP1 ( n = 3) (D) , 3T3-L1 preadipocytes were treated with 1, 2 μM celastrol and 40 μM chloroquine for 12 h and subjected to electron microscopy ( n = 5) (E) , 3T3-L1 adipocytes were treated with 1 and 2 μM celastrol for 24 h and subjected to Western blotting of P62 and LC3 I/II ( n = 3). Protein expression was calculated relative to β -actin or GAPDH and depicted at the top of each blot. Error bars represent SEM. Veh, vehicle; Cela, celastrol; CQ, chloroquine; BafA1, bafilomycin A1; AP, autophagosome.

    Article Snippet: Preadipocytes infected with RFP-GFP-LC3 adeno-associated virus were treated with 1 μM celastrol, 40 μM chloroquine or 200 nM bafilomycin A1 for 24 h. Cells were fixed with 4% paraformaldehyde and blocked with 5% BSA, then subjected to primary antibody LAMP1 (Cell Signaling Technology, United States, Cat #9091, RRID:AB_2687579, 1:100 dilution) overnight, followed by incubation with Alexa Fluor 647-conjugated goat anti-rabbit IgG antibody (Abcam, United States, Cat # ab150079, RRID:AB_2722623, 1:500 dilution).

    Techniques: Staining, Immunofluorescence, Western Blot, Electron Microscopy, Expressing