genus rhodococcus (DSMZ)
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Structured Review
DSMZ
genus rhodococcus
![Fig. 1. Core-genome maximum-likelihood (ML) trees based on concatenated sequence alignments of conserved genes (left, 409 gene markers) or proteins (right, 323 protein markers). The analysis includes the type strains of all <t>Rhodococcus</t> species with genome assemblies available at the NCBI as of January 2024 (acc. nos. in Table S1, available in the online Supplementary Material). Rhodococcoides fascians from an early diverging branch of the rhodococcal radiation [11] was used as an outgroup. The tree was midpoint rooted because of the uncertain position of Rhodococcus antarcticus 75T [53] within the genus Rhodococcus. Branch support is given for 1000 ultrafast bootstrap replicates (IQtree UFBoot). The large case numbers on the nt-based tree indicate the main Rhodococcus sublineages as defined in ref. [11]. The trees are entirely congruent with our previous ML phylogenies based on Mycobacteriales or Nocardiaceae core-genome alignments (the latter incorporating a larger strain representation than the type’s) [11]. The only exception is that Rhodococcus rhodnii ATCC 33071T and Rhodococcus triatomae DSM 44892T form here an independent branch at the root of the monophyletic line of descent containing sublineages 3 and 4 instead of being part of the sublineage 4 radiation (see ref. [11]).](https://pub-med-unpaywalled-images-cdn.bioz.com/pub_med_ids_ending_with_3668/pm40063668/pm40063668__page4_image1.jpg)
Genus Rhodococcus, supplied by DSMZ, used in various techniques. Bioz Stars score: 94/100, based on 35 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/genus rhodococcus/product/DSMZ
Average 94 stars, based on 35 article reviews
Genus Rhodococcus, supplied by DSMZ, used in various techniques. Bioz Stars score: 94/100, based on 35 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/genus rhodococcus/product/DSMZ
Average 94 stars, based on 35 article reviews
genus rhodococcus - by Bioz Stars,
2026-03
94/100 stars
Images
1) Product Images from "Rhodococcus parequi sp. nov., a new species isolated from equine farm soil closely related to the pathogen Rhodococcus equi ."
Article Title: Rhodococcus parequi sp. nov., a new species isolated from equine farm soil closely related to the pathogen Rhodococcus equi .
Journal: International journal of systematic and evolutionary microbiology
doi: 10.1099/ijsem.0.006679
Figure Legend Snippet: Fig. 1. Core-genome maximum-likelihood (ML) trees based on concatenated sequence alignments of conserved genes (left, 409 gene markers) or proteins (right, 323 protein markers). The analysis includes the type strains of all Rhodococcus species with genome assemblies available at the NCBI as of January 2024 (acc. nos. in Table S1, available in the online Supplementary Material). Rhodococcoides fascians from an early diverging branch of the rhodococcal radiation [11] was used as an outgroup. The tree was midpoint rooted because of the uncertain position of Rhodococcus antarcticus 75T [53] within the genus Rhodococcus. Branch support is given for 1000 ultrafast bootstrap replicates (IQtree UFBoot). The large case numbers on the nt-based tree indicate the main Rhodococcus sublineages as defined in ref. [11]. The trees are entirely congruent with our previous ML phylogenies based on Mycobacteriales or Nocardiaceae core-genome alignments (the latter incorporating a larger strain representation than the type’s) [11]. The only exception is that Rhodococcus rhodnii ATCC 33071T and Rhodococcus triatomae DSM 44892T form here an independent branch at the root of the monophyletic line of descent containing sublineages 3 and 4 instead of being part of the sublineage 4 radiation (see ref. [11]).
Techniques Used: Sequencing
![Fig. 2. Unrooted core-genome ML tree of Rhodococcus monophyletic sublineage no. 2 containing R. equi and R. parequi PAM 2766T. The analysis includes a selection of R. equi strains representative of the genomic diversity of the species [29] (acc. nos. in Table S1). Based on a concatenated alignment of 828 core genes identified using Get-Homologues v22082022 [40] (orthologues identified with the COG and OrthoMCL clustering algorithms intersect using the settings minimal coverage 75% and maximum E-value 1e−05). Substitution model was GTR+F+ASC+R3. Branch support for each node is 100 (1000 ultrafast bootstrap replicates using IQtree UFBoot).](https://pub-med-unpaywalled-images-cdn.bioz.com/pub_med_ids_ending_with_3668/pm40063668/pm40063668__page5_image1.jpg "Fig. 2. Unrooted core-genome ML tree of Rhodococcus monophyletic sublineage no. 2 containing R. equi and ...")
Figure Legend Snippet: Fig. 2. Unrooted core-genome ML tree of Rhodococcus monophyletic sublineage no. 2 containing R. equi and R. parequi PAM 2766T. The analysis includes a selection of R. equi strains representative of the genomic diversity of the species [29] (acc. nos. in Table S1). Based on a concatenated alignment of 828 core genes identified using Get-Homologues v22082022 [40] (orthologues identified with the COG and OrthoMCL clustering algorithms intersect using the settings minimal coverage 75% and maximum E-value 1e−05). Substitution model was GTR+F+ASC+R3. Branch support for each node is 100 (1000 ultrafast bootstrap replicates using IQtree UFBoot).
Techniques Used: Selection