Journal: PeerJ

Article Title: Zinc solubilizing bacteria and their potential as bioinoculant for growth promotion of green soybean ( Glycine max L. Merr.)

doi: 10.7717/peerj.15128

Figure Lengend Snippet: Maximum likelihood method was employed to construct a tree. E. coli ATCC1175 T .

Article Snippet: The sequence of Escherichia coli ATCC 11775 T (X80725) was used as an outgroup.

Techniques: Construct

Journal: Polymers

Article Title: Exploiting Polyhydroxyalkanoates for Biomedical Applications

doi: 10.3390/polym15081937

Figure Lengend Snippet: Diversity of biomedical applications of polyhydroxyalkanoates and their derivatives in drug carriers and delivery.

Article Snippet: P(3HB-3HV) , B. cereus FA11 , PHA-PEG with Epirubicin inhibited pathogens: Escherichia coli ATCC 11775, Pseudomonas aeruginosa ATCC 27853, and Staphylococcus aureus , [ ] .

Techniques:

Journal: Polymers

Article Title: Exploiting Polyhydroxyalkanoates for Biomedical Applications

doi: 10.3390/polym15081937

Figure Lengend Snippet: Diversity of biomedical applications of polyhydroxyalkanoates and their derivatives as biocontrol agents.

Article Snippet: P(3HB-3HV) , B. cereus FA11 , PHA-PEG with Epirubicin inhibited pathogens: Escherichia coli ATCC 11775, Pseudomonas aeruginosa ATCC 27853, and Staphylococcus aureus , [ ] .

Techniques: Infection, Modification

Journal: Animals : an Open Access Journal from MDPI

Article Title: Characterization of Autochthonous Strains from the Cecal Content of Creole Roosters for a Potential Use as Probiotics

doi: 10.3390/ani13030455

Figure Lengend Snippet: In vitro screening of antibacterial activity of CLP4 isolates from the cecal content of Creole roosters against enteropathogenic bacteria ( n = 6).

Article Snippet: Escherichia coli ATCC ® 11775 TM , 12.50.

Techniques: In Vitro, Activity Assay, Inhibition

Journal: Animals : an Open Access Journal from MDPI

Article Title: Characterization of Autochthonous Strains from the Cecal Content of Creole Roosters for a Potential Use as Probiotics

doi: 10.3390/ani13030455

Figure Lengend Snippet: Evaluation of the antibiotic sensitivity of the Lactobacillus spp. isolates from the cecal content of Creole roosters ( n = 6).

Article Snippet: Escherichia coli ATCC ® 11775 TM , 12.50.

Techniques:

Journal: Antibiotics

Article Title: Differentiation of Escherichia fergusonii and Escherichia coli Isolated from Patients with Inflammatory Bowel Disease/Ischemic Colitis and Their Antimicrobial Susceptibility Patterns

doi: 10.3390/antibiotics12010154

Figure Lengend Snippet: The neighbour-joining phylogenetic tree based on 16S rRNA gene sequences of isolated E. coli / E. fergusonii strains from patients with IBD or IC patients and healthy controls (HCs). The numbers at the nodes indicate the percentage of 1000 bootstrap replicates, and Escherichia hermannii CIP 103176 T was used an outgroup. The accession numbers of retrieved 16S rRNA gene sequences are given in parentheses. Strains names with colour codes (red = IBD; green = IC; and blue = HCs).

Article Snippet: We extracted 645 bp adk gene sequences of type species and representatives of E. coli and E. fergusonii species, including E. coli ATCC 11775 T (CP033092), E. coli O157:H7 (BA000007), E. coli K12 (U00096), E. fergusonii ATCC 35469 T (CU928158), and E. fergusonii RHB19-C05 (CP057657), from respective whole genome sequences and aligned all the adk gene sequences of 83 isolates with adk gene sequences from E. coli KCTC 2441 T , E. coli 25922, and E. fergusonii KCTC 22525 T using a multalign interface server [ ].

Techniques: Isolation

Journal: Antibiotics

Article Title: Differentiation of Escherichia fergusonii and Escherichia coli Isolated from Patients with Inflammatory Bowel Disease/Ischemic Colitis and Their Antimicrobial Susceptibility Patterns

doi: 10.3390/antibiotics12010154

Figure Lengend Snippet: The neighbour-joining phylogenetic tree based on 16S rRNA gene sequences of isolated E. coli / E. fergusonii strains from patients with IBD or IC. The numbers at the nodes indicate the percentage of 1000 bootstrap replicates. Escherichia hermannii CIP 103176T was used an outgroup. The accession numbers of retrieved 16S rRNA gene sequences are given in parentheses. Strain names in red and blue represent IBD (red = CD; and blue = UC), and green represents IC.

Article Snippet: We extracted 645 bp adk gene sequences of type species and representatives of E. coli and E. fergusonii species, including E. coli ATCC 11775 T (CP033092), E. coli O157:H7 (BA000007), E. coli K12 (U00096), E. fergusonii ATCC 35469 T (CU928158), and E. fergusonii RHB19-C05 (CP057657), from respective whole genome sequences and aligned all the adk gene sequences of 83 isolates with adk gene sequences from E. coli KCTC 2441 T , E. coli 25922, and E. fergusonii KCTC 22525 T using a multalign interface server [ ].

Techniques: Isolation

Journal: Antibiotics

Article Title: Differentiation of Escherichia fergusonii and Escherichia coli Isolated from Patients with Inflammatory Bowel Disease/Ischemic Colitis and Their Antimicrobial Susceptibility Patterns

doi: 10.3390/antibiotics12010154

Figure Lengend Snippet: The neighbour-joining phylogenetic tree based on 583-bp adk gene sequences of isolated E. coli strains from patients with IBD or IC. The numbers at the nodes indicate the percentage of 400 bootstrap replicates. Routltella planticola KpH165 was used an outgroup. Strain names in red and blue represent IBD (red = CD; and blue = UC), and green represents IC. The accession numbers are provided in parentheses whose adk gene sequences were retrieved from whole genome sequences.

Article Snippet: We extracted 645 bp adk gene sequences of type species and representatives of E. coli and E. fergusonii species, including E. coli ATCC 11775 T (CP033092), E. coli O157:H7 (BA000007), E. coli K12 (U00096), E. fergusonii ATCC 35469 T (CU928158), and E. fergusonii RHB19-C05 (CP057657), from respective whole genome sequences and aligned all the adk gene sequences of 83 isolates with adk gene sequences from E. coli KCTC 2441 T , E. coli 25922, and E. fergusonii KCTC 22525 T using a multalign interface server [ ].

Techniques: Isolation

Journal: Antibiotics

Article Title: Differentiation of Escherichia fergusonii and Escherichia coli Isolated from Patients with Inflammatory Bowel Disease/Ischemic Colitis and Their Antimicrobial Susceptibility Patterns

doi: 10.3390/antibiotics12010154

Figure Lengend Snippet: Differentiating adk gene nucleotides of E. coli against E. fergusonii strains.

Article Snippet: We extracted 645 bp adk gene sequences of type species and representatives of E. coli and E. fergusonii species, including E. coli ATCC 11775 T (CP033092), E. coli O157:H7 (BA000007), E. coli K12 (U00096), E. fergusonii ATCC 35469 T (CU928158), and E. fergusonii RHB19-C05 (CP057657), from respective whole genome sequences and aligned all the adk gene sequences of 83 isolates with adk gene sequences from E. coli KCTC 2441 T , E. coli 25922, and E. fergusonii KCTC 22525 T using a multalign interface server [ ].

Techniques: Sequencing