Journal: BMC Genomics

Article Title: Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state

doi: 10.1186/1471-2164-13-138

Figure Lengend Snippet: Correlation matrix for D. vulgaris gene expression that compares biofilm cells to planktonic cells grown with different substrates using a centered Pearson correlation. Cells were grown in a defined S4D medium with sulfate (except for ‘pyruvate only’), and provided with a different carbon and energy source (lactate, pyruvate, hydrogen, or formate). The correlation matrix was generated with MicrobesOnline functional genomics analysis (microbesonline.org).

Article Snippet: Cultures of Desulfovibrio vulgaris ATCC 29579 were acquired from Dr. T.C.

Techniques: Expressing, Generated, Functional Assay

Journal: BMC Genomics

Article Title: Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state

doi: 10.1186/1471-2164-13-138

Figure Lengend Snippet: Cell-wide depiction of significantly up-expressed transcripts for mature D. vulgaris biofilms compared to both batch and chemostat planktonic cells. The following genes were also detected as significantly up-expressed proteins: SodB, KatA, Hsp20 (DVU2441), Hsp20 (DVU2442), UspA (DVU0423).

Article Snippet: Cultures of Desulfovibrio vulgaris ATCC 29579 were acquired from Dr. T.C.

Techniques:

Journal: BMC Genomics

Article Title: Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state

doi: 10.1186/1471-2164-13-138

Figure Lengend Snippet: Conceptual model (a) of the transcriptional responses in energy metabolism and pyruvate-acetate metabolic node for a mature D. vulgaris biofilm (red is up-expressed and blue is down-expressed) compared to planktonic cells.

Article Snippet: Cultures of Desulfovibrio vulgaris ATCC 29579 were acquired from Dr. T.C.

Techniques: