Journal: PLoS ONE

Article Title: Conjugative Plasmids of Neisseria gonorrhoeae

doi: 10.1371/journal.pone.0009962

Figure Lengend Snippet: Annotation of open reading frames located within the neisserial conjugative plasmid (pEP5289) with a Dutch type tetM determinant and a Dutch type backbone.

Article Snippet: traD , 165 , BACUNI_04470 of Bacteroides uniformis ATCC , 56%/25 , conjugal transfer.

Techniques: Plasmid Preparation, Modification, Sequencing, Binding Assay

Journal: Gut Microbes

Article Title: Compositional changes to the ileal microbiome precede the onset of spontaneous ileitis in SHIP deficient mice

doi: 10.1080/19490976.2018.1560767

Figure Lengend Snippet: NCBI BLAST identification of discriminating taxa in the 4-week-old SHIP +/+ and SHIP −/− mouse ilea. Top ten discriminating taxa of 4-week-old SHIP +/+ and SHIP −/− mice ileal contents assigned taxonomy at the species and strain level. Presented are the sequence identities corresponding to what percentage of the sequenced 16S V4-V5 region matches taxa in the database. Grey bars indicate taxa, which are lower in relative abundance in SHIP −/− mice compared to SHIP +/+ mice.

Article Snippet: Seq_8 , 97% , Bacteroides uniformis , ATCC 8492.

Techniques: Sequencing

Journal: Biology Direct

Article Title: Evolutionary primacy of sodium bioenergetics

doi: 10.1186/1745-6150-3-13

Figure Lengend Snippet: Distribution of V-type ATPases in bacteria a

Article Snippet: , Bacteroides uniformis ATCC 8492 , - , Y.

Techniques:

Journal: PLoS ONE

Article Title: Extending the Aerolysin Family: From Bacteria to Vertebrates

doi: 10.1371/journal.pone.0020349

Figure Lengend Snippet: Proteins 1–4 are present in bacteria, 5–11 in Eukaryotes. Domain organization representatives: (1) alpha-toxin, gi:452163 [ Clostridium septicum ]; (2) Hemolysin-3, gi:2501300 [ Aeromonas hydrophila ]; (3) hypothetical protein BACUNI_04630, gi:160892167 [ Bacteroides uniformis ATCC 8492]; (4) pXO2-60 protein, gi: 10956450 [ Bacillus anthracis ]; (5) hypothetical protein CAN71829, gi:147838248 [ Vitis vinifera ]; (6) ep37-L2, gi:2339973 [ Cynops pyrrhogaster ]; (7) Natterin-3 precursor, gi:75571591 [ Thalassophryne nattereri ]; (8) hypothetical protein NEMVEDRAFT_v1g221281, gi:156349328 [ Nematostella vectensis ]; (9) hypothetical protein LOC494812, gi:148223884 [ Xenopus laevis ]; (10) hypothetical protein LOC613112, gi:73853870 [ Xenopus tropicalis ]; (11) hypothetical protein LOC568775, gi:162139040 [ Danio rerio ].

Article Snippet: The first is the Bacteroides uniformis ATCC 8492 protein (gi: 160892167) from a recently sequenced B. uniformis genome obtained from the human gut (data obtained from the Human Microbiome Project).

Techniques: