r c 1003  (ATCC)


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    ATCC r c 1003
    Putative rreB homologs in Rhodobacterales . (A) Multiple sequence alignment of sequences corresponding to the putative small mRNAs containing homologous sORFs of 18 codons (named rreR ) and preceded by a region with extended complementarity to the 3′-end of 16 sRNA (Extended SD region). Canonical SD, GTG start codon and stop codons are highlighted in gray. For other descriptions see <xref ref-type=(Fig. 2A . (B) Multiple sequence alignment of the small proteins RreR encoded by the sORFs shown in A). O.ar.238, Octadecabacter arcticus 238; O.an.307, Octadecabacter antarcticus 307; J.sp.1, Jannaschia sp CCS 1; Ros.e.19469, Roseibacterium elongatum DSM 19469; Ro.d.114, Roseobacter denitrificans OCh 114; Ro.l.149, Roseobacter litoralis Och 149; D.s.12, Dinoroseobacter shibae DFL 12; P.t.23, Planktomarina temperata RCA 23; Ph.g.26640, Phaeobacter gallaeciensis DSM 26640; Ph.i.17395, Phaeobacter inhibens DSM 17395; Pa.a.7686, Paracoccus aminophilus JCM 7686; R.c.1003, Rhodobacter capsulatus SB 1003; Pa.d 1222, Paracoccus denitrificans PD 1222; Rh.s.2351, Rhodovulum sulfidophilum DSM 2351; C.i.P73, Celeribacter indicus strain P73; R.s.2.4.1., Rhodobacter spaheroides ATCC 2.4.1. (C) Predicted spatial structure of RreR from D. shibae DFL 12. " width="250" height="auto" />
    R C 1003, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Conserved small mRNA with an unique, extended Shine-Dalgarno sequence"

    Article Title: Conserved small mRNA with an unique, extended Shine-Dalgarno sequence

    Journal: RNA Biology

    doi: 10.1080/15476286.2016.1256534

    Putative rreB homologs in Rhodobacterales . (A) Multiple sequence alignment of sequences corresponding to the putative small mRNAs containing homologous sORFs of 18 codons (named rreR ) and preceded by a region with extended complementarity to the 3′-end of 16 sRNA (Extended SD region). Canonical SD, GTG start codon and stop codons are highlighted in gray. For other descriptions see <xref ref-type=(Fig. 2A . (B) Multiple sequence alignment of the small proteins RreR encoded by the sORFs shown in A). O.ar.238, Octadecabacter arcticus 238; O.an.307, Octadecabacter antarcticus 307; J.sp.1, Jannaschia sp CCS 1; Ros.e.19469, Roseibacterium elongatum DSM 19469; Ro.d.114, Roseobacter denitrificans OCh 114; Ro.l.149, Roseobacter litoralis Och 149; D.s.12, Dinoroseobacter shibae DFL 12; P.t.23, Planktomarina temperata RCA 23; Ph.g.26640, Phaeobacter gallaeciensis DSM 26640; Ph.i.17395, Phaeobacter inhibens DSM 17395; Pa.a.7686, Paracoccus aminophilus JCM 7686; R.c.1003, Rhodobacter capsulatus SB 1003; Pa.d 1222, Paracoccus denitrificans PD 1222; Rh.s.2351, Rhodovulum sulfidophilum DSM 2351; C.i.P73, Celeribacter indicus strain P73; R.s.2.4.1., Rhodobacter spaheroides ATCC 2.4.1. (C) Predicted spatial structure of RreR from D. shibae DFL 12. " title="... inhibens DSM 17395; Pa.a.7686, Paracoccus aminophilus JCM 7686; R.c.1003, Rhodobacter capsulatus SB 1003; Pa.d 1222, Paracoccus denitrificans ..." property="contentUrl" width="100%" height="100%"/>
    Figure Legend Snippet: Putative rreB homologs in Rhodobacterales . (A) Multiple sequence alignment of sequences corresponding to the putative small mRNAs containing homologous sORFs of 18 codons (named rreR ) and preceded by a region with extended complementarity to the 3′-end of 16 sRNA (Extended SD region). Canonical SD, GTG start codon and stop codons are highlighted in gray. For other descriptions see (Fig. 2A . (B) Multiple sequence alignment of the small proteins RreR encoded by the sORFs shown in A). O.ar.238, Octadecabacter arcticus 238; O.an.307, Octadecabacter antarcticus 307; J.sp.1, Jannaschia sp CCS 1; Ros.e.19469, Roseibacterium elongatum DSM 19469; Ro.d.114, Roseobacter denitrificans OCh 114; Ro.l.149, Roseobacter litoralis Och 149; D.s.12, Dinoroseobacter shibae DFL 12; P.t.23, Planktomarina temperata RCA 23; Ph.g.26640, Phaeobacter gallaeciensis DSM 26640; Ph.i.17395, Phaeobacter inhibens DSM 17395; Pa.a.7686, Paracoccus aminophilus JCM 7686; R.c.1003, Rhodobacter capsulatus SB 1003; Pa.d 1222, Paracoccus denitrificans PD 1222; Rh.s.2351, Rhodovulum sulfidophilum DSM 2351; C.i.P73, Celeribacter indicus strain P73; R.s.2.4.1., Rhodobacter spaheroides ATCC 2.4.1. (C) Predicted spatial structure of RreR from D. shibae DFL 12.

    Techniques Used: Sequencing

    aspergillus oryzae ahlburg cohn  (ATCC)


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    ATCC aspergillus oryzae ahlburg cohn
    Aspergillus Oryzae Ahlburg Cohn, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    r c 1003  (ATCC)


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    ATCC r c 1003
    Putative rreB homologs in Rhodobacterales . (A) Multiple sequence alignment of sequences corresponding to the putative small mRNAs containing homologous sORFs of 18 codons (named rreR ) and preceded by a region with extended complementarity to the 3′-end of 16 sRNA (Extended SD region). Canonical SD, GTG start codon and stop codons are highlighted in gray. For other descriptions see <xref ref-type=(Fig. 2A . (B) Multiple sequence alignment of the small proteins RreR encoded by the sORFs shown in A). O.ar.238, Octadecabacter arcticus 238; O.an.307, Octadecabacter antarcticus 307; J.sp.1, Jannaschia sp CCS 1; Ros.e.19469, Roseibacterium elongatum DSM 19469; Ro.d.114, Roseobacter denitrificans OCh 114; Ro.l.149, Roseobacter litoralis Och 149; D.s.12, Dinoroseobacter shibae DFL 12; P.t.23, Planktomarina temperata RCA 23; Ph.g.26640, Phaeobacter gallaeciensis DSM 26640; Ph.i.17395, Phaeobacter inhibens DSM 17395; Pa.a.7686, Paracoccus aminophilus JCM 7686; R.c.1003, Rhodobacter capsulatus SB 1003; Pa.d 1222, Paracoccus denitrificans PD 1222; Rh.s.2351, Rhodovulum sulfidophilum DSM 2351; C.i.P73, Celeribacter indicus strain P73; R.s.2.4.1., Rhodobacter spaheroides ATCC 2.4.1. (C) Predicted spatial structure of RreR from D. shibae DFL 12. " width="250" height="auto" />
    R C 1003, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Conserved small mRNA with an unique, extended Shine-Dalgarno sequence"

    Article Title: Conserved small mRNA with an unique, extended Shine-Dalgarno sequence

    Journal: RNA Biology

    doi: 10.1080/15476286.2016.1256534

    Putative rreB homologs in Rhodobacterales . (A) Multiple sequence alignment of sequences corresponding to the putative small mRNAs containing homologous sORFs of 18 codons (named rreR ) and preceded by a region with extended complementarity to the 3′-end of 16 sRNA (Extended SD region). Canonical SD, GTG start codon and stop codons are highlighted in gray. For other descriptions see <xref ref-type=(Fig. 2A . (B) Multiple sequence alignment of the small proteins RreR encoded by the sORFs shown in A). O.ar.238, Octadecabacter arcticus 238; O.an.307, Octadecabacter antarcticus 307; J.sp.1, Jannaschia sp CCS 1; Ros.e.19469, Roseibacterium elongatum DSM 19469; Ro.d.114, Roseobacter denitrificans OCh 114; Ro.l.149, Roseobacter litoralis Och 149; D.s.12, Dinoroseobacter shibae DFL 12; P.t.23, Planktomarina temperata RCA 23; Ph.g.26640, Phaeobacter gallaeciensis DSM 26640; Ph.i.17395, Phaeobacter inhibens DSM 17395; Pa.a.7686, Paracoccus aminophilus JCM 7686; R.c.1003, Rhodobacter capsulatus SB 1003; Pa.d 1222, Paracoccus denitrificans PD 1222; Rh.s.2351, Rhodovulum sulfidophilum DSM 2351; C.i.P73, Celeribacter indicus strain P73; R.s.2.4.1., Rhodobacter spaheroides ATCC 2.4.1. (C) Predicted spatial structure of RreR from D. shibae DFL 12. " title="... inhibens DSM 17395; Pa.a.7686, Paracoccus aminophilus JCM 7686; R.c.1003, Rhodobacter capsulatus SB 1003; Pa.d 1222, Paracoccus denitrificans ..." property="contentUrl" width="100%" height="100%"/>
    Figure Legend Snippet: Putative rreB homologs in Rhodobacterales . (A) Multiple sequence alignment of sequences corresponding to the putative small mRNAs containing homologous sORFs of 18 codons (named rreR ) and preceded by a region with extended complementarity to the 3′-end of 16 sRNA (Extended SD region). Canonical SD, GTG start codon and stop codons are highlighted in gray. For other descriptions see (Fig. 2A . (B) Multiple sequence alignment of the small proteins RreR encoded by the sORFs shown in A). O.ar.238, Octadecabacter arcticus 238; O.an.307, Octadecabacter antarcticus 307; J.sp.1, Jannaschia sp CCS 1; Ros.e.19469, Roseibacterium elongatum DSM 19469; Ro.d.114, Roseobacter denitrificans OCh 114; Ro.l.149, Roseobacter litoralis Och 149; D.s.12, Dinoroseobacter shibae DFL 12; P.t.23, Planktomarina temperata RCA 23; Ph.g.26640, Phaeobacter gallaeciensis DSM 26640; Ph.i.17395, Phaeobacter inhibens DSM 17395; Pa.a.7686, Paracoccus aminophilus JCM 7686; R.c.1003, Rhodobacter capsulatus SB 1003; Pa.d 1222, Paracoccus denitrificans PD 1222; Rh.s.2351, Rhodovulum sulfidophilum DSM 2351; C.i.P73, Celeribacter indicus strain P73; R.s.2.4.1., Rhodobacter spaheroides ATCC 2.4.1. (C) Predicted spatial structure of RreR from D. shibae DFL 12.

    Techniques Used: Sequencing

    nrll 3357  (ATCC)


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    ATCC nrll 3357
    Major characteristics and genetic diversity of the Aspergillus genomes.
    Nrll 3357, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "What can comparative genomics tell us about species concepts in the genus Aspergillus ?"

    Article Title: What can comparative genomics tell us about species concepts in the genus Aspergillus ?

    Journal: Studies in Mycology

    doi: 10.3114/sim.2007.59.02

    Major characteristics and genetic diversity of the Aspergillus genomes.
    Figure Legend Snippet: Major characteristics and genetic diversity of the Aspergillus genomes.

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    bkt2873  (ATCC)


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    ATCC bkt2873
    Representation of plasmid groups and the plasmid distribution in analyzed strains.
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    1) Product Images from "Plasmidome Interchange between Clostridium botulinum, Clostridium novyi and Clostridium haemolyticum Converts Strains of Independent Lineages into Distinctly Different Pathogens"

    Article Title: Plasmidome Interchange between Clostridium botulinum, Clostridium novyi and Clostridium haemolyticum Converts Strains of Independent Lineages into Distinctly Different Pathogens

    Journal: PLoS ONE

    doi: 10.1371/journal.pone.0107777

    Representation of plasmid groups and the plasmid distribution in analyzed strains.
    Figure Legend Snippet: Representation of plasmid groups and the plasmid distribution in analyzed strains.

    Techniques Used: Plasmid Preparation

    mcf7 bc  (ATCC)


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    ATCC mcf7 bc
    Percentage of in vitro tumor cell lines growth at 10 μM for compounds
    Mcf7 Bc, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Synthesis and Anticancer Activity of 2-(Alkyl-, Alkaryl-, Aryl-, Hetaryl-)-[1,2,4]triazolo[1,5- c ]quinazolines"

    Article Title: Synthesis and Anticancer Activity of 2-(Alkyl-, Alkaryl-, Aryl-, Hetaryl-)-[1,2,4]triazolo[1,5- c ]quinazolines

    Journal: Scientia Pharmaceutica

    doi: 10.3797/scipharm.1211-08

    Percentage of in vitro tumor cell lines growth at 10 μM for compounds
    Figure Legend Snippet: Percentage of in vitro tumor cell lines growth at 10 μM for compounds

    Techniques Used: In Vitro

    The influence of compounds on the growth of individual tumor cell lines (GI 50 ≤1.00 μM)
    Figure Legend Snippet: The influence of compounds on the growth of individual tumor cell lines (GI 50 ≤1.00 μM)

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    mda mb  (ATCC)


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    ATCC mda mb
    Mda Mb, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    strain tx07 7308  (ATCC)


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    ATCC strain tx07 7308
    Alignment of the chromosomes of strains <t>TX07-7308</t> (top) and ATCC 25017 (bottom) using MAUVE 2. Identically colored boxes, known as locally collinear blocks (LCBs), depict homologous regions in the two chromosomes. The edges of LCBs indicate chromosome rearrangements due to recombination, insertions, and/or inversions. Sequences of strain ATCC 25017 inverted in relation to those of strain TX07-7308 are shown as blocks below the horizontal line. The vertical lines connecting the LCBs point to regions of homology among the two chromosomes. Numbers above the maps indicate nucleotide positions within the respective chromosomes.
    Strain Tx07 7308, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Genetic diversity within the genus Francisella as revealed by comparative analyses of the genomes of two North American isolates from environmental sources"

    Article Title: Genetic diversity within the genus Francisella as revealed by comparative analyses of the genomes of two North American isolates from environmental sources

    Journal: BMC Genomics

    doi: 10.1186/1471-2164-13-422

    Alignment of the chromosomes of strains TX07-7308 (top) and ATCC 25017 (bottom) using MAUVE 2. Identically colored boxes, known as locally collinear blocks (LCBs), depict homologous regions in the two chromosomes. The edges of LCBs indicate chromosome rearrangements due to recombination, insertions, and/or inversions. Sequences of strain ATCC 25017 inverted in relation to those of strain TX07-7308 are shown as blocks below the horizontal line. The vertical lines connecting the LCBs point to regions of homology among the two chromosomes. Numbers above the maps indicate nucleotide positions within the respective chromosomes.
    Figure Legend Snippet: Alignment of the chromosomes of strains TX07-7308 (top) and ATCC 25017 (bottom) using MAUVE 2. Identically colored boxes, known as locally collinear blocks (LCBs), depict homologous regions in the two chromosomes. The edges of LCBs indicate chromosome rearrangements due to recombination, insertions, and/or inversions. Sequences of strain ATCC 25017 inverted in relation to those of strain TX07-7308 are shown as blocks below the horizontal line. The vertical lines connecting the LCBs point to regions of homology among the two chromosomes. Numbers above the maps indicate nucleotide positions within the respective chromosomes.

    Techniques Used:

    Synteny plot of the chromosomes of strains TX07-7308 and ATCC 25017 generated by NUCmer. This plot shows regions of identity between the two chromosomes based on pair-wise alignments. Strain TX07-7308 sequence is represented on the X-axis. Strain ATCC 25017 sequence is represented on the Y-axis. Plus strand matches are slanted from the bottom left to the upper right corner and are shown in red. Minus strand matches are slanted from the upper left to the lower right and are shown in blue. The number of dots/lines shown in the plot is the same as the number of exact matches found by NUCmer. Numbers indicate nucleotide positions within the respective chromosomes.
    Figure Legend Snippet: Synteny plot of the chromosomes of strains TX07-7308 and ATCC 25017 generated by NUCmer. This plot shows regions of identity between the two chromosomes based on pair-wise alignments. Strain TX07-7308 sequence is represented on the X-axis. Strain ATCC 25017 sequence is represented on the Y-axis. Plus strand matches are slanted from the bottom left to the upper right corner and are shown in red. Minus strand matches are slanted from the upper left to the lower right and are shown in blue. The number of dots/lines shown in the plot is the same as the number of exact matches found by NUCmer. Numbers indicate nucleotide positions within the respective chromosomes.

    Techniques Used: Generated, Sequencing

    Venn diagram depicting the shared (orthologs) and unique protein coding genes in the genomes of Francisella spp. strain TX07-7308, F. philomiragia strains ATCC 25017, and F. novicida strain U112. Numbers in parenthesis indicate the total number of protein coding genes in the genomes of each of the three strains. Strains ATCC 25017 and TX07-7308 had 1719 orthologous protein coding genes, strains ATCC 25017 and U112 had 1507 orthologous protein coding genes, whereas strains TX07-7308 and U112 had 1522 orthologous protein coding genes.
    Figure Legend Snippet: Venn diagram depicting the shared (orthologs) and unique protein coding genes in the genomes of Francisella spp. strain TX07-7308, F. philomiragia strains ATCC 25017, and F. novicida strain U112. Numbers in parenthesis indicate the total number of protein coding genes in the genomes of each of the three strains. Strains ATCC 25017 and TX07-7308 had 1719 orthologous protein coding genes, strains ATCC 25017 and U112 had 1507 orthologous protein coding genes, whereas strains TX07-7308 and U112 had 1522 orthologous protein coding genes.

    Techniques Used:

    Identification of pilus biosynthesis, oligopeptide transport, glucuronate metabolism, and lactose metabolism genes
    Figure Legend Snippet: Identification of pilus biosynthesis, oligopeptide transport, glucuronate metabolism, and lactose metabolism genes

    Techniques Used: Blocking Assay

    Comparison of arsenic resistance loci of F. philomiragia strain ATCC 25017 (A and C) and Francisella spp. strain TX07-7308 (B and D). The relevant ORFs marked in A and C are: Fphi_1740, transposase X; Fphi_1741 and 1750, integrase catalytic subunit; Fphi_1742, transposase; Fphi_1743, transposase; Fphi_1744, invertase/recombinase-like protein; Fphi_1745, truncated ArsB arsenite/antimonite exporter; Fphi_1746, arsenate reductase; Fphi_1747, sulfate transporter; Fphi_1748, hypothetical protein; Fphi_1749, mechanosensitive ion channel family protein; Fphi_1817, ArsR family transcriptional regulator; Fphi_1818, ArsB arsenite/antimonite exporter. The relevant ORFs marked in B and D are: F7308_0309, ArsR family transcriptional regulator; F7308_0310, Arsenical-resistance protein ACR3; F7308_1298, Arsenical-resistance protein ACR3; F7308_1299, ArsR family transcriptional regulator. t1, t2, and t3 are tRNA genes. The numbers on either side of the maps refer to the nucleotide positions in the respective chromosomes.
    Figure Legend Snippet: Comparison of arsenic resistance loci of F. philomiragia strain ATCC 25017 (A and C) and Francisella spp. strain TX07-7308 (B and D). The relevant ORFs marked in A and C are: Fphi_1740, transposase X; Fphi_1741 and 1750, integrase catalytic subunit; Fphi_1742, transposase; Fphi_1743, transposase; Fphi_1744, invertase/recombinase-like protein; Fphi_1745, truncated ArsB arsenite/antimonite exporter; Fphi_1746, arsenate reductase; Fphi_1747, sulfate transporter; Fphi_1748, hypothetical protein; Fphi_1749, mechanosensitive ion channel family protein; Fphi_1817, ArsR family transcriptional regulator; Fphi_1818, ArsB arsenite/antimonite exporter. The relevant ORFs marked in B and D are: F7308_0309, ArsR family transcriptional regulator; F7308_0310, Arsenical-resistance protein ACR3; F7308_1298, Arsenical-resistance protein ACR3; F7308_1299, ArsR family transcriptional regulator. t1, t2, and t3 are tRNA genes. The numbers on either side of the maps refer to the nucleotide positions in the respective chromosomes.

    Techniques Used:

    A Summary of important genetic traits among strains TX07-7308, ATCC 25015, ATCC 25017, 3523, Fx1, U112, and Schu S4. ArsRB. Arsenic resistance locus, GlcUA. Glucuronate metabolism locus, Lac. Lactose metabolism locus, Opp. Oligopeptide ABC transporter locus, Thi. Thiamine biosynthesis locus. + indicates the presence and – indicates the absence of a particualr locus in each strain. B . Neighbor joining tree using succinate dehydrogenase ( sdhA ) genes. Phylogenetic relationships among strains TX07-7308, ATCC 25015, ATCC 25017, U112, and eleven other Francisella isolates based on SdhA sequences are shown. Nodes with bootstrap support greater than 70% are indicated. C . As in Figure B, but using full-length 16S rRNA genes.
    Figure Legend Snippet: A Summary of important genetic traits among strains TX07-7308, ATCC 25015, ATCC 25017, 3523, Fx1, U112, and Schu S4. ArsRB. Arsenic resistance locus, GlcUA. Glucuronate metabolism locus, Lac. Lactose metabolism locus, Opp. Oligopeptide ABC transporter locus, Thi. Thiamine biosynthesis locus. + indicates the presence and – indicates the absence of a particualr locus in each strain. B . Neighbor joining tree using succinate dehydrogenase ( sdhA ) genes. Phylogenetic relationships among strains TX07-7308, ATCC 25015, ATCC 25017, U112, and eleven other Francisella isolates based on SdhA sequences are shown. Nodes with bootstrap support greater than 70% are indicated. C . As in Figure B, but using full-length 16S rRNA genes.

    Techniques Used:

    Comparison of the genomes of five different strains within the genus Francisella
    Figure Legend Snippet: Comparison of the genomes of five different strains within the genus Francisella

    Techniques Used:

    fungi aspergillus oryzae  (ATCC)


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    ATCC fungi aspergillus oryzae
    Effect of pH and temperature on specific amylase activity of EL-14 and standard. (A) EL-14 was grown at different pH and specific amylase activity was determined. (B) EL-14 was grown at different temperatures and specific amylase activity was determined. (C) standards ( A. <t>oryzae</t> and <t>A.</t> <t>niger</t> ) were grown at the same conditions to compare their activity with P. minima . The crude extracellular sample (EL-14) exhibited the highest activity at 25°C and pH 9, significantly more than standard. Means followed by the same letter within a column are not significantly different at P < 0.01 according to the Duncan multiple range test.
    Fungi Aspergillus Oryzae, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Amylase production by Preussia minima , a fungus of endophytic origin: optimization of fermentation conditions and analysis of fungal secretome by LC-MS"

    Article Title: Amylase production by Preussia minima , a fungus of endophytic origin: optimization of fermentation conditions and analysis of fungal secretome by LC-MS

    Journal: BMC Microbiology

    doi: 10.1186/1471-2180-14-55

    Effect of pH and temperature on specific amylase activity of EL-14 and standard. (A) EL-14 was grown at different pH and specific amylase activity was determined. (B) EL-14 was grown at different temperatures and specific amylase activity was determined. (C) standards ( A. oryzae and A. niger ) were grown at the same conditions to compare their activity with P. minima . The crude extracellular sample (EL-14) exhibited the highest activity at 25°C and pH 9, significantly more than standard. Means followed by the same letter within a column are not significantly different at P < 0.01 according to the Duncan multiple range test.
    Figure Legend Snippet: Effect of pH and temperature on specific amylase activity of EL-14 and standard. (A) EL-14 was grown at different pH and specific amylase activity was determined. (B) EL-14 was grown at different temperatures and specific amylase activity was determined. (C) standards ( A. oryzae and A. niger ) were grown at the same conditions to compare their activity with P. minima . The crude extracellular sample (EL-14) exhibited the highest activity at 25°C and pH 9, significantly more than standard. Means followed by the same letter within a column are not significantly different at P < 0.01 according to the Duncan multiple range test.

    Techniques Used: Activity Assay

    Qualitative assessment of amylase activity by zymography. Zymography was performed to confirm that α-amylase activity at pH 9 and 25°C was optimal, in comparison with standards ( A. oryzae and A. niger ). M = molecular weight markers. A common band was detected at around 70 kDa for P. minima .
    Figure Legend Snippet: Qualitative assessment of amylase activity by zymography. Zymography was performed to confirm that α-amylase activity at pH 9 and 25°C was optimal, in comparison with standards ( A. oryzae and A. niger ). M = molecular weight markers. A common band was detected at around 70 kDa for P. minima .

    Techniques Used: Activity Assay, Zymography, Molecular Weight

    Proteins in the secretome of Preussia minima identified by LC MS/MS and compared to proteins in the NCBI database 1 by BLAST searching
    Figure Legend Snippet: Proteins in the secretome of Preussia minima identified by LC MS/MS and compared to proteins in the NCBI database 1 by BLAST searching

    Techniques Used:

    bcrc 11601  (ATCC)


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    ATCC bcrc 11601
    Bacterial strains and plasmids used in this study.
    Bcrc 11601, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Images

    1) Product Images from "DNA Polymorphisms and Biocontrol of Bacillus Antagonistic to Citrus Bacterial Canker with Indication of the Interference of Phyllosphere Biofilms"

    Article Title: DNA Polymorphisms and Biocontrol of Bacillus Antagonistic to Citrus Bacterial Canker with Indication of the Interference of Phyllosphere Biofilms

    Journal: PLoS ONE

    doi: 10.1371/journal.pone.0042124

    Bacterial strains and plasmids used in this study.
    Figure Legend Snippet: Bacterial strains and plasmids used in this study.

    Techniques Used: Sequencing, Isolation, Plasmid Preparation, Clone Assay

    ifam 1003 t  (ATCC)


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    ATCC ifam 1003 t
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    ATCC nrll 3357
    Major characteristics and genetic diversity of the Aspergillus genomes.
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    Representation of plasmid groups and the plasmid distribution in analyzed strains.
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    Percentage of in vitro tumor cell lines growth at 10 μM for compounds
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    ATCC strain tx07 7308
    Alignment of the chromosomes of strains <t>TX07-7308</t> (top) and ATCC 25017 (bottom) using MAUVE 2. Identically colored boxes, known as locally collinear blocks (LCBs), depict homologous regions in the two chromosomes. The edges of LCBs indicate chromosome rearrangements due to recombination, insertions, and/or inversions. Sequences of strain ATCC 25017 inverted in relation to those of strain TX07-7308 are shown as blocks below the horizontal line. The vertical lines connecting the LCBs point to regions of homology among the two chromosomes. Numbers above the maps indicate nucleotide positions within the respective chromosomes.
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    ATCC fungi aspergillus oryzae
    Effect of pH and temperature on specific amylase activity of EL-14 and standard. (A) EL-14 was grown at different pH and specific amylase activity was determined. (B) EL-14 was grown at different temperatures and specific amylase activity was determined. (C) standards ( A. <t>oryzae</t> and <t>A.</t> <t>niger</t> ) were grown at the same conditions to compare their activity with P. minima . The crude extracellular sample (EL-14) exhibited the highest activity at 25°C and pH 9, significantly more than standard. Means followed by the same letter within a column are not significantly different at P < 0.01 according to the Duncan multiple range test.
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    ATCC bcrc 11601
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    Image Search Results


    Putative rreB homologs in Rhodobacterales . (A) Multiple sequence alignment of sequences corresponding to the putative small mRNAs containing homologous sORFs of 18 codons (named rreR ) and preceded by a region with extended complementarity to the 3′-end of 16 sRNA (Extended SD region). Canonical SD, GTG start codon and stop codons are highlighted in gray. For other descriptions see <xref ref-type=(Fig. 2A . (B) Multiple sequence alignment of the small proteins RreR encoded by the sORFs shown in A). O.ar.238, Octadecabacter arcticus 238; O.an.307, Octadecabacter antarcticus 307; J.sp.1, Jannaschia sp CCS 1; Ros.e.19469, Roseibacterium elongatum DSM 19469; Ro.d.114, Roseobacter denitrificans OCh 114; Ro.l.149, Roseobacter litoralis Och 149; D.s.12, Dinoroseobacter shibae DFL 12; P.t.23, Planktomarina temperata RCA 23; Ph.g.26640, Phaeobacter gallaeciensis DSM 26640; Ph.i.17395, Phaeobacter inhibens DSM 17395; Pa.a.7686, Paracoccus aminophilus JCM 7686; R.c.1003, Rhodobacter capsulatus SB 1003; Pa.d 1222, Paracoccus denitrificans PD 1222; Rh.s.2351, Rhodovulum sulfidophilum DSM 2351; C.i.P73, Celeribacter indicus strain P73; R.s.2.4.1., Rhodobacter spaheroides ATCC 2.4.1. (C) Predicted spatial structure of RreR from D. shibae DFL 12. " width="100%" height="100%">

    Journal: RNA Biology

    Article Title: Conserved small mRNA with an unique, extended Shine-Dalgarno sequence

    doi: 10.1080/15476286.2016.1256534

    Figure Lengend Snippet: Putative rreB homologs in Rhodobacterales . (A) Multiple sequence alignment of sequences corresponding to the putative small mRNAs containing homologous sORFs of 18 codons (named rreR ) and preceded by a region with extended complementarity to the 3′-end of 16 sRNA (Extended SD region). Canonical SD, GTG start codon and stop codons are highlighted in gray. For other descriptions see (Fig. 2A . (B) Multiple sequence alignment of the small proteins RreR encoded by the sORFs shown in A). O.ar.238, Octadecabacter arcticus 238; O.an.307, Octadecabacter antarcticus 307; J.sp.1, Jannaschia sp CCS 1; Ros.e.19469, Roseibacterium elongatum DSM 19469; Ro.d.114, Roseobacter denitrificans OCh 114; Ro.l.149, Roseobacter litoralis Och 149; D.s.12, Dinoroseobacter shibae DFL 12; P.t.23, Planktomarina temperata RCA 23; Ph.g.26640, Phaeobacter gallaeciensis DSM 26640; Ph.i.17395, Phaeobacter inhibens DSM 17395; Pa.a.7686, Paracoccus aminophilus JCM 7686; R.c.1003, Rhodobacter capsulatus SB 1003; Pa.d 1222, Paracoccus denitrificans PD 1222; Rh.s.2351, Rhodovulum sulfidophilum DSM 2351; C.i.P73, Celeribacter indicus strain P73; R.s.2.4.1., Rhodobacter spaheroides ATCC 2.4.1. (C) Predicted spatial structure of RreR from D. shibae DFL 12.

    Article Snippet: O.ar.238, Octadecabacter arcticus 238; O.an.307, Octadecabacter antarcticus 307; J.sp.1, Jannaschia sp CCS 1; Ros.e.19469, Roseibacterium elongatum DSM 19469; Ro.d.114, Roseobacter denitrificans OCh 114; Ro.l.149, Roseobacter litoralis Och 149; D.s.12, Dinoroseobacter shibae DFL 12; P.t.23, Planktomarina temperata RCA 23; Ph.g.26640, Phaeobacter gallaeciensis DSM 26640; Ph.i.17395, Phaeobacter inhibens DSM 17395; Pa.a.7686, Paracoccus aminophilus JCM 7686; R.c.1003, Rhodobacter capsulatus SB 1003; Pa.d 1222, Paracoccus denitrificans PD 1222; Rh.s.2351, Rhodovulum sulfidophilum DSM 2351; C.i.P73, Celeribacter indicus strain P73; R.s.2.4.1., Rhodobacter spaheroides ATCC 2.4.1. (C) Predicted spatial structure of RreR from D. shibae DFL 12.

    Techniques: Sequencing

    Major characteristics and genetic diversity of the Aspergillus genomes.

    Journal: Studies in Mycology

    Article Title: What can comparative genomics tell us about species concepts in the genus Aspergillus ?

    doi: 10.3114/sim.2007.59.02

    Figure Lengend Snippet: Major characteristics and genetic diversity of the Aspergillus genomes.

    Article Snippet: Strain/Isolate , Af293 , A1163 , ATCC 1015 , CBS 513.88 , NRLL 3357 , ATCC 42149 , Af293 , NRRL 181.

    Techniques:

    Representation of plasmid groups and the plasmid distribution in analyzed strains.

    Journal: PLoS ONE

    Article Title: Plasmidome Interchange between Clostridium botulinum, Clostridium novyi and Clostridium haemolyticum Converts Strains of Independent Lineages into Distinctly Different Pathogens

    doi: 10.1371/journal.pone.0107777

    Figure Lengend Snippet: Representation of plasmid groups and the plasmid distribution in analyzed strains.

    Article Snippet: Libraries of strains BKT75002, BKT2873, 16868, CCUG 7971, NCTC 9693, NCTC 8350, NCTC 9691, ATCC 27606, K25 and DC5 were prepared using the Nextera XT DNA Sample Preparation kit (Illumina, San Diego, USA) and paired-end sequenced (2×250 bp) on an Illumina MiSeq Benchtop Sequencer, with approximately 300 bp inserts.

    Techniques: Plasmid Preparation

    Percentage of in vitro tumor cell lines growth at 10 μM for compounds

    Journal: Scientia Pharmaceutica

    Article Title: Synthesis and Anticancer Activity of 2-(Alkyl-, Alkaryl-, Aryl-, Hetaryl-)-[1,2,4]triazolo[1,5- c ]quinazolines

    doi: 10.3797/scipharm.1211-08

    Figure Lengend Snippet: Percentage of in vitro tumor cell lines growth at 10 μM for compounds

    Article Snippet: 5.10 , , 57.02 , −10.11–120.31 , 25.07 (A549/ATCC/nscLC), 56.27 (HOP-62/nscLC), 11.95 (HOP-92/nscLC), 58.89 (NCI-H23/nscLC), 20.32 (NCI-H460/nscLC), 40.58 (NCI-H522/nscLC), 44.03 (HCT-116/ColC), 43.63 (HCT-15/ColC), 47.67 (HT29/ColC), 42.78 (KM12/ColC), 32.84 (SW-620/ColC), 58.28 (BT-549/BC), 29.74 (MCF7/BC), 64.37 (MDA-MB-231/ATCC/BC), −10.11 (MDA-MB-435/BC), 21.67 (NCI/ADR-RES/BC), 46.30 (IGROV1/OV), 34.97 (OVCAR-3/OV), 23.63 (OVCAR-8/OV), 64.14 (CCRF-CEM/L), 59.79 (HL-60(TB)/L), 30.84 (K-562/L), 47.76 (RPMI-822/L), 14.20 (SR/L), 66.99 (786-0/RC), 44.33 (CAKI-1/RC), 10.54 (RXF 393/RC), 65.31 (UO-31/RC), 57.67 (LOX IMVI/M), 55.63 (M14/M), 57.27 (SK-M EL-28/M), 28.78 (SK-MEL-5/M), 60.50 (UACC-257/M), 65.67 (UACC-62/M), 58.40 (SF-268/CNSC), 29.74 (SF-295/CNSC), 65.45 (SF-539/CNSC), 67.66 (SNB-19/CNSC), 41.59 (SNB-75/CNSC).

    Techniques: In Vitro

    The influence of compounds on the growth of individual tumor cell lines (GI 50 ≤1.00 μM)

    Journal: Scientia Pharmaceutica

    Article Title: Synthesis and Anticancer Activity of 2-(Alkyl-, Alkaryl-, Aryl-, Hetaryl-)-[1,2,4]triazolo[1,5- c ]quinazolines

    doi: 10.3797/scipharm.1211-08

    Figure Lengend Snippet: The influence of compounds on the growth of individual tumor cell lines (GI 50 ≤1.00 μM)

    Article Snippet: 5.10 , , 57.02 , −10.11–120.31 , 25.07 (A549/ATCC/nscLC), 56.27 (HOP-62/nscLC), 11.95 (HOP-92/nscLC), 58.89 (NCI-H23/nscLC), 20.32 (NCI-H460/nscLC), 40.58 (NCI-H522/nscLC), 44.03 (HCT-116/ColC), 43.63 (HCT-15/ColC), 47.67 (HT29/ColC), 42.78 (KM12/ColC), 32.84 (SW-620/ColC), 58.28 (BT-549/BC), 29.74 (MCF7/BC), 64.37 (MDA-MB-231/ATCC/BC), −10.11 (MDA-MB-435/BC), 21.67 (NCI/ADR-RES/BC), 46.30 (IGROV1/OV), 34.97 (OVCAR-3/OV), 23.63 (OVCAR-8/OV), 64.14 (CCRF-CEM/L), 59.79 (HL-60(TB)/L), 30.84 (K-562/L), 47.76 (RPMI-822/L), 14.20 (SR/L), 66.99 (786-0/RC), 44.33 (CAKI-1/RC), 10.54 (RXF 393/RC), 65.31 (UO-31/RC), 57.67 (LOX IMVI/M), 55.63 (M14/M), 57.27 (SK-M EL-28/M), 28.78 (SK-MEL-5/M), 60.50 (UACC-257/M), 65.67 (UACC-62/M), 58.40 (SF-268/CNSC), 29.74 (SF-295/CNSC), 65.45 (SF-539/CNSC), 67.66 (SNB-19/CNSC), 41.59 (SNB-75/CNSC).

    Techniques:

    Alignment of the chromosomes of strains TX07-7308 (top) and ATCC 25017 (bottom) using MAUVE 2. Identically colored boxes, known as locally collinear blocks (LCBs), depict homologous regions in the two chromosomes. The edges of LCBs indicate chromosome rearrangements due to recombination, insertions, and/or inversions. Sequences of strain ATCC 25017 inverted in relation to those of strain TX07-7308 are shown as blocks below the horizontal line. The vertical lines connecting the LCBs point to regions of homology among the two chromosomes. Numbers above the maps indicate nucleotide positions within the respective chromosomes.

    Journal: BMC Genomics

    Article Title: Genetic diversity within the genus Francisella as revealed by comparative analyses of the genomes of two North American isolates from environmental sources

    doi: 10.1186/1471-2164-13-422

    Figure Lengend Snippet: Alignment of the chromosomes of strains TX07-7308 (top) and ATCC 25017 (bottom) using MAUVE 2. Identically colored boxes, known as locally collinear blocks (LCBs), depict homologous regions in the two chromosomes. The edges of LCBs indicate chromosome rearrangements due to recombination, insertions, and/or inversions. Sequences of strain ATCC 25017 inverted in relation to those of strain TX07-7308 are shown as blocks below the horizontal line. The vertical lines connecting the LCBs point to regions of homology among the two chromosomes. Numbers above the maps indicate nucleotide positions within the respective chromosomes.

    Article Snippet: Furthermore, the homolog of FTN_1314, which encodes a hypothetical protein in F. novicida strain U112, was truncated in strain TX07-7308 (F7308_1011) and homologs of FTN_1318-FTN_1320 (encoding a hypothetical protein, a pathogenicity determinant protein, and a hypothetical protein, respectively) were absent in strains ATCC 25017 and TX07-7308.

    Techniques:

    Synteny plot of the chromosomes of strains TX07-7308 and ATCC 25017 generated by NUCmer. This plot shows regions of identity between the two chromosomes based on pair-wise alignments. Strain TX07-7308 sequence is represented on the X-axis. Strain ATCC 25017 sequence is represented on the Y-axis. Plus strand matches are slanted from the bottom left to the upper right corner and are shown in red. Minus strand matches are slanted from the upper left to the lower right and are shown in blue. The number of dots/lines shown in the plot is the same as the number of exact matches found by NUCmer. Numbers indicate nucleotide positions within the respective chromosomes.

    Journal: BMC Genomics

    Article Title: Genetic diversity within the genus Francisella as revealed by comparative analyses of the genomes of two North American isolates from environmental sources

    doi: 10.1186/1471-2164-13-422

    Figure Lengend Snippet: Synteny plot of the chromosomes of strains TX07-7308 and ATCC 25017 generated by NUCmer. This plot shows regions of identity between the two chromosomes based on pair-wise alignments. Strain TX07-7308 sequence is represented on the X-axis. Strain ATCC 25017 sequence is represented on the Y-axis. Plus strand matches are slanted from the bottom left to the upper right corner and are shown in red. Minus strand matches are slanted from the upper left to the lower right and are shown in blue. The number of dots/lines shown in the plot is the same as the number of exact matches found by NUCmer. Numbers indicate nucleotide positions within the respective chromosomes.

    Article Snippet: Furthermore, the homolog of FTN_1314, which encodes a hypothetical protein in F. novicida strain U112, was truncated in strain TX07-7308 (F7308_1011) and homologs of FTN_1318-FTN_1320 (encoding a hypothetical protein, a pathogenicity determinant protein, and a hypothetical protein, respectively) were absent in strains ATCC 25017 and TX07-7308.

    Techniques: Generated, Sequencing

    Venn diagram depicting the shared (orthologs) and unique protein coding genes in the genomes of Francisella spp. strain TX07-7308, F. philomiragia strains ATCC 25017, and F. novicida strain U112. Numbers in parenthesis indicate the total number of protein coding genes in the genomes of each of the three strains. Strains ATCC 25017 and TX07-7308 had 1719 orthologous protein coding genes, strains ATCC 25017 and U112 had 1507 orthologous protein coding genes, whereas strains TX07-7308 and U112 had 1522 orthologous protein coding genes.

    Journal: BMC Genomics

    Article Title: Genetic diversity within the genus Francisella as revealed by comparative analyses of the genomes of two North American isolates from environmental sources

    doi: 10.1186/1471-2164-13-422

    Figure Lengend Snippet: Venn diagram depicting the shared (orthologs) and unique protein coding genes in the genomes of Francisella spp. strain TX07-7308, F. philomiragia strains ATCC 25017, and F. novicida strain U112. Numbers in parenthesis indicate the total number of protein coding genes in the genomes of each of the three strains. Strains ATCC 25017 and TX07-7308 had 1719 orthologous protein coding genes, strains ATCC 25017 and U112 had 1507 orthologous protein coding genes, whereas strains TX07-7308 and U112 had 1522 orthologous protein coding genes.

    Article Snippet: Furthermore, the homolog of FTN_1314, which encodes a hypothetical protein in F. novicida strain U112, was truncated in strain TX07-7308 (F7308_1011) and homologs of FTN_1318-FTN_1320 (encoding a hypothetical protein, a pathogenicity determinant protein, and a hypothetical protein, respectively) were absent in strains ATCC 25017 and TX07-7308.

    Techniques:

    Identification of pilus biosynthesis, oligopeptide transport, glucuronate metabolism, and lactose metabolism genes

    Journal: BMC Genomics

    Article Title: Genetic diversity within the genus Francisella as revealed by comparative analyses of the genomes of two North American isolates from environmental sources

    doi: 10.1186/1471-2164-13-422

    Figure Lengend Snippet: Identification of pilus biosynthesis, oligopeptide transport, glucuronate metabolism, and lactose metabolism genes

    Article Snippet: Furthermore, the homolog of FTN_1314, which encodes a hypothetical protein in F. novicida strain U112, was truncated in strain TX07-7308 (F7308_1011) and homologs of FTN_1318-FTN_1320 (encoding a hypothetical protein, a pathogenicity determinant protein, and a hypothetical protein, respectively) were absent in strains ATCC 25017 and TX07-7308.

    Techniques: Blocking Assay

    Comparison of arsenic resistance loci of F. philomiragia strain ATCC 25017 (A and C) and Francisella spp. strain TX07-7308 (B and D). The relevant ORFs marked in A and C are: Fphi_1740, transposase X; Fphi_1741 and 1750, integrase catalytic subunit; Fphi_1742, transposase; Fphi_1743, transposase; Fphi_1744, invertase/recombinase-like protein; Fphi_1745, truncated ArsB arsenite/antimonite exporter; Fphi_1746, arsenate reductase; Fphi_1747, sulfate transporter; Fphi_1748, hypothetical protein; Fphi_1749, mechanosensitive ion channel family protein; Fphi_1817, ArsR family transcriptional regulator; Fphi_1818, ArsB arsenite/antimonite exporter. The relevant ORFs marked in B and D are: F7308_0309, ArsR family transcriptional regulator; F7308_0310, Arsenical-resistance protein ACR3; F7308_1298, Arsenical-resistance protein ACR3; F7308_1299, ArsR family transcriptional regulator. t1, t2, and t3 are tRNA genes. The numbers on either side of the maps refer to the nucleotide positions in the respective chromosomes.

    Journal: BMC Genomics

    Article Title: Genetic diversity within the genus Francisella as revealed by comparative analyses of the genomes of two North American isolates from environmental sources

    doi: 10.1186/1471-2164-13-422

    Figure Lengend Snippet: Comparison of arsenic resistance loci of F. philomiragia strain ATCC 25017 (A and C) and Francisella spp. strain TX07-7308 (B and D). The relevant ORFs marked in A and C are: Fphi_1740, transposase X; Fphi_1741 and 1750, integrase catalytic subunit; Fphi_1742, transposase; Fphi_1743, transposase; Fphi_1744, invertase/recombinase-like protein; Fphi_1745, truncated ArsB arsenite/antimonite exporter; Fphi_1746, arsenate reductase; Fphi_1747, sulfate transporter; Fphi_1748, hypothetical protein; Fphi_1749, mechanosensitive ion channel family protein; Fphi_1817, ArsR family transcriptional regulator; Fphi_1818, ArsB arsenite/antimonite exporter. The relevant ORFs marked in B and D are: F7308_0309, ArsR family transcriptional regulator; F7308_0310, Arsenical-resistance protein ACR3; F7308_1298, Arsenical-resistance protein ACR3; F7308_1299, ArsR family transcriptional regulator. t1, t2, and t3 are tRNA genes. The numbers on either side of the maps refer to the nucleotide positions in the respective chromosomes.

    Article Snippet: Furthermore, the homolog of FTN_1314, which encodes a hypothetical protein in F. novicida strain U112, was truncated in strain TX07-7308 (F7308_1011) and homologs of FTN_1318-FTN_1320 (encoding a hypothetical protein, a pathogenicity determinant protein, and a hypothetical protein, respectively) were absent in strains ATCC 25017 and TX07-7308.

    Techniques:

    A Summary of important genetic traits among strains TX07-7308, ATCC 25015, ATCC 25017, 3523, Fx1, U112, and Schu S4. ArsRB. Arsenic resistance locus, GlcUA. Glucuronate metabolism locus, Lac. Lactose metabolism locus, Opp. Oligopeptide ABC transporter locus, Thi. Thiamine biosynthesis locus. + indicates the presence and – indicates the absence of a particualr locus in each strain. B . Neighbor joining tree using succinate dehydrogenase ( sdhA ) genes. Phylogenetic relationships among strains TX07-7308, ATCC 25015, ATCC 25017, U112, and eleven other Francisella isolates based on SdhA sequences are shown. Nodes with bootstrap support greater than 70% are indicated. C . As in Figure B, but using full-length 16S rRNA genes.

    Journal: BMC Genomics

    Article Title: Genetic diversity within the genus Francisella as revealed by comparative analyses of the genomes of two North American isolates from environmental sources

    doi: 10.1186/1471-2164-13-422

    Figure Lengend Snippet: A Summary of important genetic traits among strains TX07-7308, ATCC 25015, ATCC 25017, 3523, Fx1, U112, and Schu S4. ArsRB. Arsenic resistance locus, GlcUA. Glucuronate metabolism locus, Lac. Lactose metabolism locus, Opp. Oligopeptide ABC transporter locus, Thi. Thiamine biosynthesis locus. + indicates the presence and – indicates the absence of a particualr locus in each strain. B . Neighbor joining tree using succinate dehydrogenase ( sdhA ) genes. Phylogenetic relationships among strains TX07-7308, ATCC 25015, ATCC 25017, U112, and eleven other Francisella isolates based on SdhA sequences are shown. Nodes with bootstrap support greater than 70% are indicated. C . As in Figure B, but using full-length 16S rRNA genes.

    Article Snippet: Furthermore, the homolog of FTN_1314, which encodes a hypothetical protein in F. novicida strain U112, was truncated in strain TX07-7308 (F7308_1011) and homologs of FTN_1318-FTN_1320 (encoding a hypothetical protein, a pathogenicity determinant protein, and a hypothetical protein, respectively) were absent in strains ATCC 25017 and TX07-7308.

    Techniques:

    Comparison of the genomes of five different strains within the genus Francisella

    Journal: BMC Genomics

    Article Title: Genetic diversity within the genus Francisella as revealed by comparative analyses of the genomes of two North American isolates from environmental sources

    doi: 10.1186/1471-2164-13-422

    Figure Lengend Snippet: Comparison of the genomes of five different strains within the genus Francisella

    Article Snippet: Furthermore, the homolog of FTN_1314, which encodes a hypothetical protein in F. novicida strain U112, was truncated in strain TX07-7308 (F7308_1011) and homologs of FTN_1318-FTN_1320 (encoding a hypothetical protein, a pathogenicity determinant protein, and a hypothetical protein, respectively) were absent in strains ATCC 25017 and TX07-7308.

    Techniques:

    Effect of pH and temperature on specific amylase activity of EL-14 and standard. (A) EL-14 was grown at different pH and specific amylase activity was determined. (B) EL-14 was grown at different temperatures and specific amylase activity was determined. (C) standards ( A. oryzae and A. niger ) were grown at the same conditions to compare their activity with P. minima . The crude extracellular sample (EL-14) exhibited the highest activity at 25°C and pH 9, significantly more than standard. Means followed by the same letter within a column are not significantly different at P < 0.01 according to the Duncan multiple range test.

    Journal: BMC Microbiology

    Article Title: Amylase production by Preussia minima , a fungus of endophytic origin: optimization of fermentation conditions and analysis of fungal secretome by LC-MS

    doi: 10.1186/1471-2180-14-55

    Figure Lengend Snippet: Effect of pH and temperature on specific amylase activity of EL-14 and standard. (A) EL-14 was grown at different pH and specific amylase activity was determined. (B) EL-14 was grown at different temperatures and specific amylase activity was determined. (C) standards ( A. oryzae and A. niger ) were grown at the same conditions to compare their activity with P. minima . The crude extracellular sample (EL-14) exhibited the highest activity at 25°C and pH 9, significantly more than standard. Means followed by the same letter within a column are not significantly different at P < 0.01 according to the Duncan multiple range test.

    Article Snippet: The same procedures were used for standard fungi Aspergillus oryzae (ATCC 10124) and A. niger (ATCC 10577) as controls at 25°C and pH 9.

    Techniques: Activity Assay

    Qualitative assessment of amylase activity by zymography. Zymography was performed to confirm that α-amylase activity at pH 9 and 25°C was optimal, in comparison with standards ( A. oryzae and A. niger ). M = molecular weight markers. A common band was detected at around 70 kDa for P. minima .

    Journal: BMC Microbiology

    Article Title: Amylase production by Preussia minima , a fungus of endophytic origin: optimization of fermentation conditions and analysis of fungal secretome by LC-MS

    doi: 10.1186/1471-2180-14-55

    Figure Lengend Snippet: Qualitative assessment of amylase activity by zymography. Zymography was performed to confirm that α-amylase activity at pH 9 and 25°C was optimal, in comparison with standards ( A. oryzae and A. niger ). M = molecular weight markers. A common band was detected at around 70 kDa for P. minima .

    Article Snippet: The same procedures were used for standard fungi Aspergillus oryzae (ATCC 10124) and A. niger (ATCC 10577) as controls at 25°C and pH 9.

    Techniques: Activity Assay, Zymography, Molecular Weight

    Proteins in the secretome of Preussia minima identified by LC MS/MS and compared to proteins in the NCBI database 1 by BLAST searching

    Journal: BMC Microbiology

    Article Title: Amylase production by Preussia minima , a fungus of endophytic origin: optimization of fermentation conditions and analysis of fungal secretome by LC-MS

    doi: 10.1186/1471-2180-14-55

    Figure Lengend Snippet: Proteins in the secretome of Preussia minima identified by LC MS/MS and compared to proteins in the NCBI database 1 by BLAST searching

    Article Snippet: The same procedures were used for standard fungi Aspergillus oryzae (ATCC 10124) and A. niger (ATCC 10577) as controls at 25°C and pH 9.

    Techniques:

    Bacterial strains and plasmids used in this study.

    Journal: PLoS ONE

    Article Title: DNA Polymorphisms and Biocontrol of Bacillus Antagonistic to Citrus Bacterial Canker with Indication of the Interference of Phyllosphere Biofilms

    doi: 10.1371/journal.pone.0042124

    Figure Lengend Snippet: Bacterial strains and plasmids used in this study.

    Article Snippet: BCRC 11601 , B. amyloliquefaciens type strain ATCC 23350, DSM7 , BCRC.

    Techniques: Sequencing, Isolation, Plasmid Preparation, Clone Assay