Structured Review

Agilent technologies array based comparative genomic hybridization
(A,B) Size and type of the abnormalities found at chronic phase (A) and sAML (B) samples from three patients analyzed by aCGH. Abnormalities found at chronic phase remained until sAML. Gains are represented above and losses below X-axis; note that there are more abnormalities found at sAML, and they are larger compared to chronic phase. aCGH, <t>array-based</t> <t>comparative</t> <t>genomic</t> <t>hybridization;</t> chr, chromosome; MPN, myeloproliferative neoplasms; sAML, secondary acute myeloid leukemia.
Array Based Comparative Genomic Hybridization, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 88/100, based on 22 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 88 stars, based on 22 article reviews
Price from $9.99 to $1999.99
array based comparative genomic hybridization - by Bioz Stars, 2020-09
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Images

1) Product Images from "Genetic Alterations in Essential Thrombocythemia Progression to Acute Myeloid Leukemia: A Case Series and Review of the Literature"

Article Title: Genetic Alterations in Essential Thrombocythemia Progression to Acute Myeloid Leukemia: A Case Series and Review of the Literature

Journal: Frontiers in Oncology

doi: 10.3389/fonc.2018.00032

(A,B) Size and type of the abnormalities found at chronic phase (A) and sAML (B) samples from three patients analyzed by aCGH. Abnormalities found at chronic phase remained until sAML. Gains are represented above and losses below X-axis; note that there are more abnormalities found at sAML, and they are larger compared to chronic phase. aCGH, array-based comparative genomic hybridization; chr, chromosome; MPN, myeloproliferative neoplasms; sAML, secondary acute myeloid leukemia.
Figure Legend Snippet: (A,B) Size and type of the abnormalities found at chronic phase (A) and sAML (B) samples from three patients analyzed by aCGH. Abnormalities found at chronic phase remained until sAML. Gains are represented above and losses below X-axis; note that there are more abnormalities found at sAML, and they are larger compared to chronic phase. aCGH, array-based comparative genomic hybridization; chr, chromosome; MPN, myeloproliferative neoplasms; sAML, secondary acute myeloid leukemia.

Techniques Used: Hybridization

Related Articles

Mutagenesis:

Article Title: Applying massive parallel sequencing to molecular diagnosis of Marfan and Loeys-Dietz syndromes.
Article Snippet: .. The Marfan (MFS) and Loeys-Dietz (LDS) syndromes are caused by mutations in the fibrillin-1 (FBN1) and Transforming Growth Factor Beta Receptor 1 and 2 (TGFBR1 and TGFBR2) genes, respectively. .. The Marfan (MFS) and Loeys-Dietz (LDS) syndromes are caused by mutations in the fibrillin-1 (FBN1) and Transforming Growth Factor Beta Receptor 1 and 2 (TGFBR1 and TGFBR2) genes, respectively.

Microarray:

Article Title: Split Hand Foot Malformation Syndrome: A Novel Heterozygous FGFR1 Mutation Detected by Next Generation Sequencing
Article Snippet: .. QF-PCR analysis for detection of common aneuploidies of chromosomes 13, 18, 21, X and Y (ABI® PRISM 3130xl, Life Technologies) and array comparative genomic hybridization (aCGH; microarray 8X60K G3 ISCA V2; CytoGenomics software; Agilent Technologies) revealed a male genomic pattern, without aneuploidies or chromosomal imbalances. .. The following 49 clinically relevant genes were analyzed by using next generation sequencing: BHLHA9, BMP2, BMPR1B, BTRC, CC2D2A, CDH3, CEP290, CHSY1, DLX5, DLX6, ESCO2, FAM58A, FBLN1, FBXW4, FGF10, FGFR1, FGFR2, FGFR3, FMN1, GDF5, GJA1, GLI3, GNAS, GREM1, HOXA13, HOXD13, IHH, KIF7, LMBR1, LRP4, MGP, MKS1, NOG, PTHLH, RECQL4, ROR2, RPGRIP1L, SALL1, SHFM1, SHH, SOX9, TBC1D24, TBX15, TMEM216, TMEM67, TP63, WNT10B, WNT3, WNT7A .

Article Title: Nucleotide substitutions in CD101, the human homolog of a diabetes susceptibility gene in non‐obese diabetic mouse, in patients with type 1 diabetes
Article Snippet: .. Copy‐number alterations in case 1 were analyzed by array‐based comparative genomic hybridization (SurePrint G3 Human Microarray, 2 × 400 k format; Agilent Technologies). ..

Article Title: Production of Multiple Bacteriocins from a Single Locus by Gastrointestinal Strains of Lactobacillus salivarius ▿
Article Snippet: .. Comparative genomic hybridizations were performed using a highly replicated custom microarray (Agilent Technologies, CA) designed based on the genome of L. salivarius UCC118, as previously described ( , , ). .. The experimental procedures for genomic DNA extraction, fragmentation, and fluorescent labeling and cohybridization experiments with fluorescently labeled genomic DNA (gDNA) of the test and reference strains employed in this study were recently described ( ).

Article Title: Applying massive parallel sequencing to molecular diagnosis of Marfan and Loeys-Dietz syndromes.
Article Snippet: .. The Marfan (MFS) and Loeys-Dietz (LDS) syndromes are caused by mutations in the fibrillin-1 (FBN1) and Transforming Growth Factor Beta Receptor 1 and 2 (TGFBR1 and TGFBR2) genes, respectively. .. The Marfan (MFS) and Loeys-Dietz (LDS) syndromes are caused by mutations in the fibrillin-1 (FBN1) and Transforming Growth Factor Beta Receptor 1 and 2 (TGFBR1 and TGFBR2) genes, respectively.

Hybridization:

Article Title: A 12p13 GRIN2B deletion is associated with developmental delay and macrocephaly
Article Snippet: .. Array-based comparative genomic hybridization (array CGH, 180 k CGH+SNP, Agilent Technologies, Santa Clara, CA, USA) according to the manufacturer’s instructions identified an ~2 Mb heterozygous deletion in chromosome 12p ( ): arr[hg19]12p13.2p13.1 (12,482,956-14,436,199) x1. ..

Article Title: Genetic Alterations in Essential Thrombocythemia Progression to Acute Myeloid Leukemia: A Case Series and Review of the Literature
Article Snippet: .. Array-based comparative genomic hybridization was performed in five cases using the Human Genome 244A and the Sureprint G3 microarrays (Agilent Technologies). ..

Article Title: Rotational motion and rheotaxis of human sperm do not require functional CatSper channels and transmembrane Ca2+ signaling
Article Snippet: .. Array CGH analysis Patients were analyzed by array comparative genomic hybridization (CGH; Agilent platform, Agilent Technologies, Santa Clara, California, USA) using 400k arrays (#G4448A). ..

Article Title: Epstein-Barr virus BALF3 mediates genomic instability and progressive malignancy in nasopharyngeal carcinoma
Article Snippet: .. Array-based comparative genomic hybridization (array CGH) Array CGH was carried out according to the manufacturer's instructions (Agilent Technologies). .. Briefly, genomic DNA was purified using a DNeasy Tissue Kit (Qiagen) and subjected to SurePrint G3 Human CGH Microarray Kit 1 × 1M and TW01TREx-BALF3 without DOX treatment at passage 1 was used as the common reference in this study.

Article Title: Split Hand Foot Malformation Syndrome: A Novel Heterozygous FGFR1 Mutation Detected by Next Generation Sequencing
Article Snippet: .. QF-PCR analysis for detection of common aneuploidies of chromosomes 13, 18, 21, X and Y (ABI® PRISM 3130xl, Life Technologies) and array comparative genomic hybridization (aCGH; microarray 8X60K G3 ISCA V2; CytoGenomics software; Agilent Technologies) revealed a male genomic pattern, without aneuploidies or chromosomal imbalances. .. The following 49 clinically relevant genes were analyzed by using next generation sequencing: BHLHA9, BMP2, BMPR1B, BTRC, CC2D2A, CDH3, CEP290, CHSY1, DLX5, DLX6, ESCO2, FAM58A, FBLN1, FBXW4, FGF10, FGFR1, FGFR2, FGFR3, FMN1, GDF5, GJA1, GLI3, GNAS, GREM1, HOXA13, HOXD13, IHH, KIF7, LMBR1, LRP4, MGP, MKS1, NOG, PTHLH, RECQL4, ROR2, RPGRIP1L, SALL1, SHFM1, SHH, SOX9, TBC1D24, TBX15, TMEM216, TMEM67, TP63, WNT10B, WNT3, WNT7A .

Article Title: Nucleotide substitutions in CD101, the human homolog of a diabetes susceptibility gene in non‐obese diabetic mouse, in patients with type 1 diabetes
Article Snippet: .. Copy‐number alterations in case 1 were analyzed by array‐based comparative genomic hybridization (SurePrint G3 Human Microarray, 2 × 400 k format; Agilent Technologies). ..

Article Title: Applying massive parallel sequencing to molecular diagnosis of Marfan and Loeys-Dietz syndromes.
Article Snippet: .. The Marfan (MFS) and Loeys-Dietz (LDS) syndromes are caused by mutations in the fibrillin-1 (FBN1) and Transforming Growth Factor Beta Receptor 1 and 2 (TGFBR1 and TGFBR2) genes, respectively. .. The Marfan (MFS) and Loeys-Dietz (LDS) syndromes are caused by mutations in the fibrillin-1 (FBN1) and Transforming Growth Factor Beta Receptor 1 and 2 (TGFBR1 and TGFBR2) genes, respectively.

Multiplex Ligation-dependent Probe Amplification:

Article Title: Applying massive parallel sequencing to molecular diagnosis of Marfan and Loeys-Dietz syndromes.
Article Snippet: .. The Marfan (MFS) and Loeys-Dietz (LDS) syndromes are caused by mutations in the fibrillin-1 (FBN1) and Transforming Growth Factor Beta Receptor 1 and 2 (TGFBR1 and TGFBR2) genes, respectively. .. The Marfan (MFS) and Loeys-Dietz (LDS) syndromes are caused by mutations in the fibrillin-1 (FBN1) and Transforming Growth Factor Beta Receptor 1 and 2 (TGFBR1 and TGFBR2) genes, respectively.

Software:

Article Title: Split Hand Foot Malformation Syndrome: A Novel Heterozygous FGFR1 Mutation Detected by Next Generation Sequencing
Article Snippet: .. QF-PCR analysis for detection of common aneuploidies of chromosomes 13, 18, 21, X and Y (ABI® PRISM 3130xl, Life Technologies) and array comparative genomic hybridization (aCGH; microarray 8X60K G3 ISCA V2; CytoGenomics software; Agilent Technologies) revealed a male genomic pattern, without aneuploidies or chromosomal imbalances. .. The following 49 clinically relevant genes were analyzed by using next generation sequencing: BHLHA9, BMP2, BMPR1B, BTRC, CC2D2A, CDH3, CEP290, CHSY1, DLX5, DLX6, ESCO2, FAM58A, FBLN1, FBXW4, FGF10, FGFR1, FGFR2, FGFR3, FMN1, GDF5, GJA1, GLI3, GNAS, GREM1, HOXA13, HOXD13, IHH, KIF7, LMBR1, LRP4, MGP, MKS1, NOG, PTHLH, RECQL4, ROR2, RPGRIP1L, SALL1, SHFM1, SHH, SOX9, TBC1D24, TBX15, TMEM216, TMEM67, TP63, WNT10B, WNT3, WNT7A .

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    Agilent technologies oligonucleotide array comparative genomic hybridization
    Chromosome 11p13 deletions for subjects with WAGR syndrome. Deletion boundaries were determined using high-resolution <t>oligonucleotide</t> <t>array</t> <t>comparative</t> <t>genomic</t> <t>hybridization</t> (NCBI Build 36, hg 18). Deletions for each subject are shown as gray bars. Heterozygous
    Oligonucleotide Array Comparative Genomic Hybridization, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 85/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/oligonucleotide array comparative genomic hybridization/product/Agilent technologies
    Average 85 stars, based on 4 article reviews
    Price from $9.99 to $1999.99
    oligonucleotide array comparative genomic hybridization - by Bioz Stars, 2020-09
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    88
    Agilent technologies comparative genome hybridization cgh
    The family pedigree and sequencing of the COL4A3 gene show a homozygous missense Gly1089Asp mutation in the patient. His mother is a carrier, whereas his father does not carry the mutation ( a ). Agilent CytoGenomics Analysis Software shows that there is no 2q deletion, and LOH is detected in the telomeric end of chromosome 2 (chr2: 207,541,513–243,014,630; b ). <t>CGH,</t> comparative genome hybridization; <t>SNP,</t> single-nucleotide polymorphism; WT, wild type.
    Comparative Genome Hybridization Cgh, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 88/100, based on 6 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/comparative genome hybridization cgh/product/Agilent technologies
    Average 88 stars, based on 6 article reviews
    Price from $9.99 to $1999.99
    comparative genome hybridization cgh - by Bioz Stars, 2020-09
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    91
    Agilent technologies array comparative genomic hybridization acgh
    Increased fitness in nutrient-limited environments is associated with amplification of specific permease genes. (A) Fitness increases for clones recovered from each selection are typically > 10%. Haploid (1N) and diploid (2N) ancestral strains were also tested in ammonium-limited chemostats but did not show fitness differences. (Amm : ammonium, Arg : arginine, Gln : glutamine, Pro : proline, Glu : glutamate, Urea : urea, Alla : allantoin, Anc : ancestor). (B) <t>DNA</t> copy number was estimated using <t>aCGH.</t> Each black point represents a measurement from a unique probe on the microarray from analysis of population DNA samples. We detected CNVs containing genes with clear connections to nitrogen import at high frequencies in populations (red lines) and clones (blue lines). Retrotransposon (Ty) sequences were frequently found at the boundary regions of CNVs.
    Array Comparative Genomic Hybridization Acgh, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 91/100, based on 97 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/array comparative genomic hybridization acgh/product/Agilent technologies
    Average 91 stars, based on 97 article reviews
    Price from $9.99 to $1999.99
    array comparative genomic hybridization acgh - by Bioz Stars, 2020-09
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    88
    Agilent technologies array comparative genomic hybridization array cgh
    <t>Array-CGH</t> profile A. and cytogenetic analysis through conventional karyotype B. of one representative MSC sample irradiated at 200 Gy and cultured with nutrients deprivation. Both array-CGH and karyotype were performed on all 20 <t>HD-MSCs.</t> The profiles are linear; neither unbalanced chromosomal rearrangements nor chromosomal aberrations were shown.
    Array Comparative Genomic Hybridization Array Cgh, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 88/100, based on 15 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/array comparative genomic hybridization array cgh/product/Agilent technologies
    Average 88 stars, based on 15 article reviews
    Price from $9.99 to $1999.99
    array comparative genomic hybridization array cgh - by Bioz Stars, 2020-09
    88/100 stars
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    Image Search Results


    Chromosome 11p13 deletions for subjects with WAGR syndrome. Deletion boundaries were determined using high-resolution oligonucleotide array comparative genomic hybridization (NCBI Build 36, hg 18). Deletions for each subject are shown as gray bars. Heterozygous

    Journal: Cortex; a journal devoted to the study of the nervous system and behavior

    Article Title: Association of brain-derived neurotrophic factor (BDNF) haploinsufficiency with lower adaptive behaviour and reduced cognitive functioning in WAGR/11p13 deletion syndrome

    doi: 10.1016/j.cortex.2013.02.009

    Figure Lengend Snippet: Chromosome 11p13 deletions for subjects with WAGR syndrome. Deletion boundaries were determined using high-resolution oligonucleotide array comparative genomic hybridization (NCBI Build 36, hg 18). Deletions for each subject are shown as gray bars. Heterozygous

    Article Snippet: Deletion boundaries for each subject with WAGR syndrome were determined using oligonucleotide array comparative genomic hybridization using a custom-designed microarray platform (Agilent Technologies, Inc., Santa Clara, CA) containing 105,000 60-mer oligonucleotide probes using NCBI Build 36 (hg18) human reference sequence as previously described ( ).

    Techniques: Hybridization

    The family pedigree and sequencing of the COL4A3 gene show a homozygous missense Gly1089Asp mutation in the patient. His mother is a carrier, whereas his father does not carry the mutation ( a ). Agilent CytoGenomics Analysis Software shows that there is no 2q deletion, and LOH is detected in the telomeric end of chromosome 2 (chr2: 207,541,513–243,014,630; b ). CGH, comparative genome hybridization; SNP, single-nucleotide polymorphism; WT, wild type.

    Journal: Human Genome Variation

    Article Title: A patient with autosomal recessive Alport syndrome due to segmental maternal isodisomy

    doi: 10.1038/hgv.2014.6

    Figure Lengend Snippet: The family pedigree and sequencing of the COL4A3 gene show a homozygous missense Gly1089Asp mutation in the patient. His mother is a carrier, whereas his father does not carry the mutation ( a ). Agilent CytoGenomics Analysis Software shows that there is no 2q deletion, and LOH is detected in the telomeric end of chromosome 2 (chr2: 207,541,513–243,014,630; b ). CGH, comparative genome hybridization; SNP, single-nucleotide polymorphism; WT, wild type.

    Article Snippet: To confirm the precise gene copy number and single-nucleotide polymorphism (SNP) haplotype of the region of the COL4A3 gene, microarray analysis using comparative genome hybridization (CGH) and SNP microarray (SurePrint G3 Human CGH+SNP Microarray 4×180 K, Agilent Technologies, Santa Clara, CA, USA) analysis were performed for the patient.

    Techniques: Sequencing, Mutagenesis, Software, Hybridization

    Increased fitness in nutrient-limited environments is associated with amplification of specific permease genes. (A) Fitness increases for clones recovered from each selection are typically > 10%. Haploid (1N) and diploid (2N) ancestral strains were also tested in ammonium-limited chemostats but did not show fitness differences. (Amm : ammonium, Arg : arginine, Gln : glutamine, Pro : proline, Glu : glutamate, Urea : urea, Alla : allantoin, Anc : ancestor). (B) DNA copy number was estimated using aCGH. Each black point represents a measurement from a unique probe on the microarray from analysis of population DNA samples. We detected CNVs containing genes with clear connections to nitrogen import at high frequencies in populations (red lines) and clones (blue lines). Retrotransposon (Ty) sequences were frequently found at the boundary regions of CNVs.

    Journal: PLoS Genetics

    Article Title: Molecular Specificity, Convergence and Constraint Shape Adaptive Evolution in Nutrient-Poor Environments

    doi: 10.1371/journal.pgen.1004041

    Figure Lengend Snippet: Increased fitness in nutrient-limited environments is associated with amplification of specific permease genes. (A) Fitness increases for clones recovered from each selection are typically > 10%. Haploid (1N) and diploid (2N) ancestral strains were also tested in ammonium-limited chemostats but did not show fitness differences. (Amm : ammonium, Arg : arginine, Gln : glutamine, Pro : proline, Glu : glutamate, Urea : urea, Alla : allantoin, Anc : ancestor). (B) DNA copy number was estimated using aCGH. Each black point represents a measurement from a unique probe on the microarray from analysis of population DNA samples. We detected CNVs containing genes with clear connections to nitrogen import at high frequencies in populations (red lines) and clones (blue lines). Retrotransposon (Ty) sequences were frequently found at the boundary regions of CNVs.

    Article Snippet: Array Comparative Genomic Hybridization (aCGH) was performed using Agilent 60mer DNA microarrays as previously described , .

    Techniques: Amplification, Clone Assay, Selection, Microarray

    Array-CGH profile A. and cytogenetic analysis through conventional karyotype B. of one representative MSC sample irradiated at 200 Gy and cultured with nutrients deprivation. Both array-CGH and karyotype were performed on all 20 HD-MSCs. The profiles are linear; neither unbalanced chromosomal rearrangements nor chromosomal aberrations were shown.

    Journal: Oncotarget

    Article Title: Resistance to neoplastic transformation of ex-vivo expanded human mesenchymal stromal cells after exposure to supramaximal physical and chemical stress

    doi: 10.18632/oncotarget.12678

    Figure Lengend Snippet: Array-CGH profile A. and cytogenetic analysis through conventional karyotype B. of one representative MSC sample irradiated at 200 Gy and cultured with nutrients deprivation. Both array-CGH and karyotype were performed on all 20 HD-MSCs. The profiles are linear; neither unbalanced chromosomal rearrangements nor chromosomal aberrations were shown.

    Article Snippet: Genetic profile of stressed MSCs Molecular karyotyping on stressed MSCs was performed through array-comparative genomic hybridization (array-CGH) with the Agilent kit (Human Genome CGH Microarray, Agilent Technologies, Santa Clara, CA) on each of the 20 HDs.

    Techniques: Irradiation, Cell Culture