strain designation comments source 874391 (ATCC)

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ATCC strain designation comments source 874391
Strain Designation Comments Source 874391, supplied by ATCC, used in various techniques. Bioz Stars score: 90/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/VR-1663D/KSU-1/pmc10251203__DataSheet_1-24-0-13
Average 90 stars, based on 4 article reviews

strain designation comments source 874391 - by Bioz Stars, 2026-10

90/100 stars

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Isolation:

Article Title: Single-strand RPA for rapid and sensitive detection of SARS-CoV-2 RNA
Article Snippet: All synthetic primers and probes (IDT) were chemically synthesized with any specified modifications, ordered at 100 or 250 nmol scale, desalted or PAGE-purified, and used as is. .. Viral genomic RNA (isolated from infected cells) from coronaviruses 229E (ATCC, VR-740D), MERS (BEI, NR-50549), SARS-CoV-1 (BEI, NR-52346), and NL63 (BEI, NR-44105), as well as influenza A (ATCC, VR-1736D), influenza B (ATCC, VR-1535D), respiratory syncytial virus (ATCC, VR-1580DQ), and rhinovirus (ATCC, VR-1663D), were used for the specificity experiment in . ..

Infection:

Virus:

Article Title: Real-time loop-mediated isothermal amplification assay for rapid detection of human papillomavirus 16 in oral squamous cell carcinoma.
Article Snippet: Objective: The present study established a real-time loop-mediated isothermal amplification (qLAMP) for rapid detection of human papillomavirus subtype 16 (HPV-16) in oral squamous cell carcinoma (OSCC).. Methods: The qLAMP assay was optimized targeting the HPV-16 E7 gene.. The analytical sensitivity and specificity of the assay were determined using HPV-18 (ATCC® 45152DTM), HPV-35 (ATCC® 40330TM), HPV-43 (ATCC® 40338TM) and HPV-56 (ATCC® 40549TM) viral strains and oral bacteria.

Clinical Proteomics:

Article Title: Variable resistance to zinc intoxication among Streptococcus agalactiae reveals a novel IS 1381 insertion element within the zinc efflux transporter gene czcD
Article Snippet: .. Strain designation Comments Source 874391 ST-17(17), Serotype III, vaginal isolate [48; 49] NEM316 (ATCC-12403) ST-23(23), Serotype III, neonatal sepsis [50] COH1 (ATCC BAA-1176) ST-17(17), Serotype III, neonatal sepsis [51] A909 (ATCC BAA-1138) ST-7(1), Serotype Ia, neonatal sepsis [52] BM110 ST-17(17), Serotype III, vaginal isolate [53] 515 (ATCC BAA-1177) ST-23(23), Serotype Ia, neonatal CSF [54] CJB111 (ATCC BAA-23) ST-1(1), Serotype V, blood [55] 2603V/R (ATCC BAA-611) ST-110(19), Serotype V [56] NCTC 8181 (ATCC 13813) ST-7, non-typeable, milk [57] 18RS21 (ATCC BAA-1175) ST-19(19), Serotype II [58] ABSA 1014 ST-28(19), Serotype II, urine [33] ABSA 729 ST-452(24), non-typeable, urine [33] ABSA 834 ST-182(19), III, urine [33] UPSA 807 ST-1(1), V, urine [33] UPSA 714 ST-17(17), III, urine [33] UPSA 058 ST-23(23), III, urine [33] GU3155 834ΔczcD (czcD- mutant); Cm This work GU3201 czcD-complement (pGU2699) in GU3155, Sp This work Plasmids pHY304aad9 ori (Ts); temperature-sensitive shuttle vector; Sp [33] pGU2461 pHY304aad9-derivative czcDΔ::Cm construct; Cm, Sp [25] pGU2699 czcD cloned into pMSP3545spec; Sp [25] Primers czcD-Chk-F1 TGTCTTTGATGAAGCCACCA czcD-Chk-R1 TCGAAAGGTGTATTTCCGATG Cm-Up-R1 CGTTTGTTGGTTCAAATAATGA Cm-Down-F1 TTCCATGGACTTCATTTACTGG identical IS1381 insertion in czcD as compared to S. agalactiae 834. ..

Mutagenesis:

Construct:

Clone Assay:

Amplification:

Article Title: An array-based melt curve analysis method for the identification and classification of closely related pathogen strains.
Article Snippet: .. HEV and HRV target sequences Strain Accession number/ catalog number Prediction/purpose Amplicon sequence excluding primer binding sites (5’–>3’) Target-HEV-A GenBank: KJ170577.1 High pH for Probe-HEV-[1, 2, 4, 5] GGTTCCGCCACGGACTTGCGCGTTACGACAGGCTGGCTGCTGGGTTGCAGCTGCCTGCTCCATGGTTAGAA Target-HEV-B GenBank: AF465517.1 High pH for Probe-HEV-3 Predicted cross-reactivity GGTTCCGCTGCAGAGTTGCCCGTTACGACAGGCCACCCACTGGATTGTGAGCACCTGCTCCGCAGTTAAGA Target-HEV-C GenBank: KF311743.1 Low overall pH GGTTCCGCTGCGGAGTTGCCCATTACGACGCGCCACCTCCTGGTTTGGGGGCACGCGCTCCGCAGTTAGGA Target-HEV-D GenBank: EF174469.1 Low overall pH GGTTCCGCCGCAGAGTTGCCCATTACGACAGACTGCTCACTGGCGTGTGAGTATCTGCTCTGCGGTTAGGA Target-HEV-E GenBank: AY302559.1 High pH for Probe-HEV-6 GGTTCCGCTGCGGAATTGCTCATTACGACACACTACCCCTTGGATTAGGGGCATGTGCTCCACAGTTAGGA Target-HEV-F GenBank: JX275008.1 Low overall pH GGTTCCGCCACGAACTTACGCGTTACGACAAGGTATGTGTTGGCTCACGCACCCTTGCTCCGTGGTTAGGA Target-HEV-G ATCC: VR-1775DQ Commercial strain na Target-HRV-A GenBank: DQ473501.1 High pH for Probe-HRV-[1, 2] GGTCCCATCCCGCAATTACTCATTACGACCAGCTACACACTGGTTTGTGCGCACTGGCTGCAGGGTTAAGG Target-HRV-B GenBank: EF173422.1 High pH for Probe-HRV-2 Predicted cross-reactivity GGTCCCGTCCCGGAATTGCTCATTACGACCTTATCATCACTGGTTTGTGACACAAGGCTCCAGGGTTAAGG Target-HRV-C GenBank: EF173420.1 Low overall pH GGTCCCGTCCCGGAATTACTCATTACGACCTTGCCAACACTGGATTGTGTCTCAAGGCTCCAGGGTTTAGG Target-HRV-D GenBank: FJ445161.1 High pH for Probe-HRV-[3, 4] GGTCCCATCCCAGAATTGCTCATTACGACCTCCACAACATTGGATTATGCTGCAAGGCTCCGGGGTTAAGG Target-HRV-E GenBank: FJ445138.1 High pH for Probe-HRV-[2, 5] GGTCCCATCCCGTAATTGCTCGTTACGACTAGCCACACACTGGATTGTATGCACTAGCTACGGGTTTAAGG Target-HRV-F ATCC: VR-1663D Commercial strain na Target-HRV-G ZeptoMetrix: NATRVP-IDI Commercial strain na Where indicated, na denotes samples whose sequences are unknown. ..

Sequencing:

Binding Assay:

Purification:

Article Title: An array-based melt curve analysis method for the identification and classification of closely related pathogen strains
Article Snippet: Amplification was carried out on a CFX96 Touch (Bio-Rad, Hercules, CA) at 55°C for 5 minutes, 95°C for 3 minutes, followed by 30 cycles of 95°C for 15 seconds and 65°C for 30 seconds. .. The two ATCC strains of purified RNA (VR-1775DQ and VR-1663D) were used with no additional treatment. .. The Zeptometrix RNA templates (NATRVP-IDI) were prepared by treating the cultured virus with Dynabeads Silane Viral NA Kit (Thermo Fisher p/n 37011D).

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