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mc ixc  (ATCC)


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    Structured Review

    ATCC mc ixc
    Mc Ixc, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    mc ixc  (ATCC)
    93
    ATCC mc ixc
    Mc Ixc, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    93
    ATCC l casei atcc 334
    Genome atlas of L. casei ATCC 334. The color coding of the genomic features in circle 1 represents different COG categories. Locations of CRISPR, phage 1 (Lca1) and phage 2 (phage remnant), the lifestyle adaptation island, and hypervariable regions are labeled.
    L Casei Atcc 334, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC lsei 2270
    Genome atlas of L. casei ATCC 334. The color coding of the genomic features in circle 1 represents different COG categories. Locations of CRISPR, phage 1 (Lca1) and phage 2 (phage remnant), the lifestyle adaptation island, and hypervariable regions are labeled.
    Lsei 2270, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC cds for lactocepin
    Minimum evolution phylogenetic trees for ( a ) concatenated alignment of four subunits (α, β, β′, and δ) of the RNA polymerase, ( b ) <t>lactocepin,</t> ( c ) PepN, ( d ) PepX, (e) PepC/E, and ( f ) PepO from 45 LAB strains. Bacillus and Bifidobacteria are used as outgroups. Bootstrap values on the bifurcating branches are based on 1,000 random bootstrap replicates for the consensus tree. Strains that contain both PepC and PepE are circled in the RNA polymerase tree ( a ). Strains representing different genera are color coded; Lactobacillus is shown in red, Streptococcus in blue, Lactococcus in green, Leuconostoc in brown, and the rest ( Oenococcus , Enterococcus , and Pediococcus ) in black. Gene ID is given for strains with more than one homolog. Strain code: efa, Enterococcus faecalis V583; lac, L. acidophilus NCFM; lbr, L. brevis ATCC 367; lca, L. casei ATCC 334; lcb, L. casei BL23; ldb, L. delbrueckii ATCC 11842; lbu, L. delbrueckii ATCC BAA-365; lfe, L. fermentum IFO3956; lga, L. gasseri ATCC 33323; lhe, L. helveticus DPC 4571; ljo, L. johnsonii NCC 533; lpl, L. plantarum WCFS1; lre, L. reuteri DSM 20016; lrf, L. reuteri JCM 1112; lrh, L. rhamnosus HN001; lsa, L. sakei subsp. sakei 23K; lsl, L. salivarius UCC118; llm, L. lactis subsp. cremoris MG1363; llc, L. lactis subsp. cremoris SK11; lla, L. lactis subsp. lactis IL1403; lci, Leuconostoc citreum KM20; lme, L. mesenteroides subsp. mesenteroides ATCC 8293; ooe, Oenococcus oeni PSU-1; ppe, P. pentosaceus ATCC 25745; sag, Streptococcus agalactiae 2603 (serotype V); sak, S. agalactiae A909 (serotype Ia); san, S. agalactiae NEM316 (serotype III); seu, Streptococcus equi subsp. equi 4047; seq, Streptococcus equi subsp. zooepidemicus ; sez, S. equi subsp. zooepidemicus MGCS10565; sgo, Streptococcus gordonii str. Challis substr. CH1; smu, Streptococcus mutans UA159; spd, Streptococcus pneumoniae D39; spr, S. pneumoniae R6; spn, S. pneumoniae TIGR4; spz, Streptococcus pyogenes MGAS5005 (serotype M1); spm, S. pyogenes MGAS8232 (serotype M18); spy, S. pyogenes SF370 (serotype M1); ssa, Streptococcus sanguinis SK36; ssu, Streptococcus suis 05ZYH33; ssv, S. suis 98HAH33; stc, S. thermophilus CNRZ1066; ste, S. thermophilus LMD-9; stl, S. thermophilus LMG18311; and sub, Streptococcus uberis 0140J.
    Cds For Lactocepin, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC lactocepin type prtp
    Minimum evolution phylogenetic trees for ( a ) concatenated alignment of four subunits (α, β, β′, and δ) of the RNA polymerase, ( b ) <t>lactocepin,</t> ( c ) PepN, ( d ) PepX, (e) PepC/E, and ( f ) PepO from 45 LAB strains. Bacillus and Bifidobacteria are used as outgroups. Bootstrap values on the bifurcating branches are based on 1,000 random bootstrap replicates for the consensus tree. Strains that contain both PepC and PepE are circled in the RNA polymerase tree ( a ). Strains representing different genera are color coded; Lactobacillus is shown in red, Streptococcus in blue, Lactococcus in green, Leuconostoc in brown, and the rest ( Oenococcus , Enterococcus , and Pediococcus ) in black. Gene ID is given for strains with more than one homolog. Strain code: efa, Enterococcus faecalis V583; lac, L. acidophilus NCFM; lbr, L. brevis ATCC 367; lca, L. casei ATCC 334; lcb, L. casei BL23; ldb, L. delbrueckii ATCC 11842; lbu, L. delbrueckii ATCC BAA-365; lfe, L. fermentum IFO3956; lga, L. gasseri ATCC 33323; lhe, L. helveticus DPC 4571; ljo, L. johnsonii NCC 533; lpl, L. plantarum WCFS1; lre, L. reuteri DSM 20016; lrf, L. reuteri JCM 1112; lrh, L. rhamnosus HN001; lsa, L. sakei subsp. sakei 23K; lsl, L. salivarius UCC118; llm, L. lactis subsp. cremoris MG1363; llc, L. lactis subsp. cremoris SK11; lla, L. lactis subsp. lactis IL1403; lci, Leuconostoc citreum KM20; lme, L. mesenteroides subsp. mesenteroides ATCC 8293; ooe, Oenococcus oeni PSU-1; ppe, P. pentosaceus ATCC 25745; sag, Streptococcus agalactiae 2603 (serotype V); sak, S. agalactiae A909 (serotype Ia); san, S. agalactiae NEM316 (serotype III); seu, Streptococcus equi subsp. equi 4047; seq, Streptococcus equi subsp. zooepidemicus ; sez, S. equi subsp. zooepidemicus MGCS10565; sgo, Streptococcus gordonii str. Challis substr. CH1; smu, Streptococcus mutans UA159; spd, Streptococcus pneumoniae D39; spr, S. pneumoniae R6; spn, S. pneumoniae TIGR4; spz, Streptococcus pyogenes MGAS5005 (serotype M1); spm, S. pyogenes MGAS8232 (serotype M18); spy, S. pyogenes SF370 (serotype M1); ssa, Streptococcus sanguinis SK36; ssu, Streptococcus suis 05ZYH33; ssv, S. suis 98HAH33; stc, S. thermophilus CNRZ1066; ste, S. thermophilus LMD-9; stl, S. thermophilus LMG18311; and sub, Streptococcus uberis 0140J.
    Lactocepin Type Prtp, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC human neuroblastoma cell lines lan 1
    Minimum evolution phylogenetic trees for ( a ) concatenated alignment of four subunits (α, β, β′, and δ) of the RNA polymerase, ( b ) <t>lactocepin,</t> ( c ) PepN, ( d ) PepX, (e) PepC/E, and ( f ) PepO from 45 LAB strains. Bacillus and Bifidobacteria are used as outgroups. Bootstrap values on the bifurcating branches are based on 1,000 random bootstrap replicates for the consensus tree. Strains that contain both PepC and PepE are circled in the RNA polymerase tree ( a ). Strains representing different genera are color coded; Lactobacillus is shown in red, Streptococcus in blue, Lactococcus in green, Leuconostoc in brown, and the rest ( Oenococcus , Enterococcus , and Pediococcus ) in black. Gene ID is given for strains with more than one homolog. Strain code: efa, Enterococcus faecalis V583; lac, L. acidophilus NCFM; lbr, L. brevis ATCC 367; lca, L. casei ATCC 334; lcb, L. casei BL23; ldb, L. delbrueckii ATCC 11842; lbu, L. delbrueckii ATCC BAA-365; lfe, L. fermentum IFO3956; lga, L. gasseri ATCC 33323; lhe, L. helveticus DPC 4571; ljo, L. johnsonii NCC 533; lpl, L. plantarum WCFS1; lre, L. reuteri DSM 20016; lrf, L. reuteri JCM 1112; lrh, L. rhamnosus HN001; lsa, L. sakei subsp. sakei 23K; lsl, L. salivarius UCC118; llm, L. lactis subsp. cremoris MG1363; llc, L. lactis subsp. cremoris SK11; lla, L. lactis subsp. lactis IL1403; lci, Leuconostoc citreum KM20; lme, L. mesenteroides subsp. mesenteroides ATCC 8293; ooe, Oenococcus oeni PSU-1; ppe, P. pentosaceus ATCC 25745; sag, Streptococcus agalactiae 2603 (serotype V); sak, S. agalactiae A909 (serotype Ia); san, S. agalactiae NEM316 (serotype III); seu, Streptococcus equi subsp. equi 4047; seq, Streptococcus equi subsp. zooepidemicus ; sez, S. equi subsp. zooepidemicus MGCS10565; sgo, Streptococcus gordonii str. Challis substr. CH1; smu, Streptococcus mutans UA159; spd, Streptococcus pneumoniae D39; spr, S. pneumoniae R6; spn, S. pneumoniae TIGR4; spz, Streptococcus pyogenes MGAS5005 (serotype M1); spm, S. pyogenes MGAS8232 (serotype M18); spy, S. pyogenes SF370 (serotype M1); ssa, Streptococcus sanguinis SK36; ssu, Streptococcus suis 05ZYH33; ssv, S. suis 98HAH33; stc, S. thermophilus CNRZ1066; ste, S. thermophilus LMD-9; stl, S. thermophilus LMG18311; and sub, Streptococcus uberis 0140J.
    Human Neuroblastoma Cell Lines Lan 1, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC treatment mc ixc cells
    Minimum evolution phylogenetic trees for ( a ) concatenated alignment of four subunits (α, β, β′, and δ) of the RNA polymerase, ( b ) <t>lactocepin,</t> ( c ) PepN, ( d ) PepX, (e) PepC/E, and ( f ) PepO from 45 LAB strains. Bacillus and Bifidobacteria are used as outgroups. Bootstrap values on the bifurcating branches are based on 1,000 random bootstrap replicates for the consensus tree. Strains that contain both PepC and PepE are circled in the RNA polymerase tree ( a ). Strains representing different genera are color coded; Lactobacillus is shown in red, Streptococcus in blue, Lactococcus in green, Leuconostoc in brown, and the rest ( Oenococcus , Enterococcus , and Pediococcus ) in black. Gene ID is given for strains with more than one homolog. Strain code: efa, Enterococcus faecalis V583; lac, L. acidophilus NCFM; lbr, L. brevis ATCC 367; lca, L. casei ATCC 334; lcb, L. casei BL23; ldb, L. delbrueckii ATCC 11842; lbu, L. delbrueckii ATCC BAA-365; lfe, L. fermentum IFO3956; lga, L. gasseri ATCC 33323; lhe, L. helveticus DPC 4571; ljo, L. johnsonii NCC 533; lpl, L. plantarum WCFS1; lre, L. reuteri DSM 20016; lrf, L. reuteri JCM 1112; lrh, L. rhamnosus HN001; lsa, L. sakei subsp. sakei 23K; lsl, L. salivarius UCC118; llm, L. lactis subsp. cremoris MG1363; llc, L. lactis subsp. cremoris SK11; lla, L. lactis subsp. lactis IL1403; lci, Leuconostoc citreum KM20; lme, L. mesenteroides subsp. mesenteroides ATCC 8293; ooe, Oenococcus oeni PSU-1; ppe, P. pentosaceus ATCC 25745; sag, Streptococcus agalactiae 2603 (serotype V); sak, S. agalactiae A909 (serotype Ia); san, S. agalactiae NEM316 (serotype III); seu, Streptococcus equi subsp. equi 4047; seq, Streptococcus equi subsp. zooepidemicus ; sez, S. equi subsp. zooepidemicus MGCS10565; sgo, Streptococcus gordonii str. Challis substr. CH1; smu, Streptococcus mutans UA159; spd, Streptococcus pneumoniae D39; spr, S. pneumoniae R6; spn, S. pneumoniae TIGR4; spz, Streptococcus pyogenes MGAS5005 (serotype M1); spm, S. pyogenes MGAS8232 (serotype M18); spy, S. pyogenes SF370 (serotype M1); ssa, Streptococcus sanguinis SK36; ssu, Streptococcus suis 05ZYH33; ssv, S. suis 98HAH33; stc, S. thermophilus CNRZ1066; ste, S. thermophilus LMD-9; stl, S. thermophilus LMG18311; and sub, Streptococcus uberis 0140J.
    Treatment Mc Ixc Cells, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC mc ixc cells
    Minimum evolution phylogenetic trees for ( a ) concatenated alignment of four subunits (α, β, β′, and δ) of the RNA polymerase, ( b ) <t>lactocepin,</t> ( c ) PepN, ( d ) PepX, (e) PepC/E, and ( f ) PepO from 45 LAB strains. Bacillus and Bifidobacteria are used as outgroups. Bootstrap values on the bifurcating branches are based on 1,000 random bootstrap replicates for the consensus tree. Strains that contain both PepC and PepE are circled in the RNA polymerase tree ( a ). Strains representing different genera are color coded; Lactobacillus is shown in red, Streptococcus in blue, Lactococcus in green, Leuconostoc in brown, and the rest ( Oenococcus , Enterococcus , and Pediococcus ) in black. Gene ID is given for strains with more than one homolog. Strain code: efa, Enterococcus faecalis V583; lac, L. acidophilus NCFM; lbr, L. brevis ATCC 367; lca, L. casei ATCC 334; lcb, L. casei BL23; ldb, L. delbrueckii ATCC 11842; lbu, L. delbrueckii ATCC BAA-365; lfe, L. fermentum IFO3956; lga, L. gasseri ATCC 33323; lhe, L. helveticus DPC 4571; ljo, L. johnsonii NCC 533; lpl, L. plantarum WCFS1; lre, L. reuteri DSM 20016; lrf, L. reuteri JCM 1112; lrh, L. rhamnosus HN001; lsa, L. sakei subsp. sakei 23K; lsl, L. salivarius UCC118; llm, L. lactis subsp. cremoris MG1363; llc, L. lactis subsp. cremoris SK11; lla, L. lactis subsp. lactis IL1403; lci, Leuconostoc citreum KM20; lme, L. mesenteroides subsp. mesenteroides ATCC 8293; ooe, Oenococcus oeni PSU-1; ppe, P. pentosaceus ATCC 25745; sag, Streptococcus agalactiae 2603 (serotype V); sak, S. agalactiae A909 (serotype Ia); san, S. agalactiae NEM316 (serotype III); seu, Streptococcus equi subsp. equi 4047; seq, Streptococcus equi subsp. zooepidemicus ; sez, S. equi subsp. zooepidemicus MGCS10565; sgo, Streptococcus gordonii str. Challis substr. CH1; smu, Streptococcus mutans UA159; spd, Streptococcus pneumoniae D39; spr, S. pneumoniae R6; spn, S. pneumoniae TIGR4; spz, Streptococcus pyogenes MGAS5005 (serotype M1); spm, S. pyogenes MGAS8232 (serotype M18); spy, S. pyogenes SF370 (serotype M1); ssa, Streptococcus sanguinis SK36; ssu, Streptococcus suis 05ZYH33; ssv, S. suis 98HAH33; stc, S. thermophilus CNRZ1066; ste, S. thermophilus LMD-9; stl, S. thermophilus LMG18311; and sub, Streptococcus uberis 0140J.
    Mc Ixc Cells, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC mc ixc human neuroepithelioma atcc crl
    Minimum evolution phylogenetic trees for ( a ) concatenated alignment of four subunits (α, β, β′, and δ) of the RNA polymerase, ( b ) <t>lactocepin,</t> ( c ) PepN, ( d ) PepX, (e) PepC/E, and ( f ) PepO from 45 LAB strains. Bacillus and Bifidobacteria are used as outgroups. Bootstrap values on the bifurcating branches are based on 1,000 random bootstrap replicates for the consensus tree. Strains that contain both PepC and PepE are circled in the RNA polymerase tree ( a ). Strains representing different genera are color coded; Lactobacillus is shown in red, Streptococcus in blue, Lactococcus in green, Leuconostoc in brown, and the rest ( Oenococcus , Enterococcus , and Pediococcus ) in black. Gene ID is given for strains with more than one homolog. Strain code: efa, Enterococcus faecalis V583; lac, L. acidophilus NCFM; lbr, L. brevis ATCC 367; lca, L. casei ATCC 334; lcb, L. casei BL23; ldb, L. delbrueckii ATCC 11842; lbu, L. delbrueckii ATCC BAA-365; lfe, L. fermentum IFO3956; lga, L. gasseri ATCC 33323; lhe, L. helveticus DPC 4571; ljo, L. johnsonii NCC 533; lpl, L. plantarum WCFS1; lre, L. reuteri DSM 20016; lrf, L. reuteri JCM 1112; lrh, L. rhamnosus HN001; lsa, L. sakei subsp. sakei 23K; lsl, L. salivarius UCC118; llm, L. lactis subsp. cremoris MG1363; llc, L. lactis subsp. cremoris SK11; lla, L. lactis subsp. lactis IL1403; lci, Leuconostoc citreum KM20; lme, L. mesenteroides subsp. mesenteroides ATCC 8293; ooe, Oenococcus oeni PSU-1; ppe, P. pentosaceus ATCC 25745; sag, Streptococcus agalactiae 2603 (serotype V); sak, S. agalactiae A909 (serotype Ia); san, S. agalactiae NEM316 (serotype III); seu, Streptococcus equi subsp. equi 4047; seq, Streptococcus equi subsp. zooepidemicus ; sez, S. equi subsp. zooepidemicus MGCS10565; sgo, Streptococcus gordonii str. Challis substr. CH1; smu, Streptococcus mutans UA159; spd, Streptococcus pneumoniae D39; spr, S. pneumoniae R6; spn, S. pneumoniae TIGR4; spz, Streptococcus pyogenes MGAS5005 (serotype M1); spm, S. pyogenes MGAS8232 (serotype M18); spy, S. pyogenes SF370 (serotype M1); ssa, Streptococcus sanguinis SK36; ssu, Streptococcus suis 05ZYH33; ssv, S. suis 98HAH33; stc, S. thermophilus CNRZ1066; ste, S. thermophilus LMD-9; stl, S. thermophilus LMG18311; and sub, Streptococcus uberis 0140J.
    Mc Ixc Human Neuroepithelioma Atcc Crl, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Image Search Results


    Genome atlas of L. casei ATCC 334. The color coding of the genomic features in circle 1 represents different COG categories. Locations of CRISPR, phage 1 (Lca1) and phage 2 (phage remnant), the lifestyle adaptation island, and hypervariable regions are labeled.

    Journal: Genome Biology and Evolution

    Article Title: Genome Sequence and Comparative Genome Analysis of Lactobacillus casei : Insights into Their Niche-Associated Evolution

    doi: 10.1093/gbe/evp019

    Figure Lengend Snippet: Genome atlas of L. casei ATCC 334. The color coding of the genomic features in circle 1 represents different COG categories. Locations of CRISPR, phage 1 (Lca1) and phage 2 (phage remnant), the lifestyle adaptation island, and hypervariable regions are labeled.

    Article Snippet: Instead, LACR_C42 clustered with lactocepins from L. casei ATCC 334 (LSEI 2270) and L. casei BL23 (LCABL 24520).

    Techniques: CRISPR, Labeling

    Minimum evolution phylogenetic trees for ( a ) concatenated alignment of four subunits (α, β, β′, and δ) of the RNA polymerase, ( b ) lactocepin, ( c ) PepN, ( d ) PepX, (e) PepC/E, and ( f ) PepO from 45 LAB strains. Bacillus and Bifidobacteria are used as outgroups. Bootstrap values on the bifurcating branches are based on 1,000 random bootstrap replicates for the consensus tree. Strains that contain both PepC and PepE are circled in the RNA polymerase tree ( a ). Strains representing different genera are color coded; Lactobacillus is shown in red, Streptococcus in blue, Lactococcus in green, Leuconostoc in brown, and the rest ( Oenococcus , Enterococcus , and Pediococcus ) in black. Gene ID is given for strains with more than one homolog. Strain code: efa, Enterococcus faecalis V583; lac, L. acidophilus NCFM; lbr, L. brevis ATCC 367; lca, L. casei ATCC 334; lcb, L. casei BL23; ldb, L. delbrueckii ATCC 11842; lbu, L. delbrueckii ATCC BAA-365; lfe, L. fermentum IFO3956; lga, L. gasseri ATCC 33323; lhe, L. helveticus DPC 4571; ljo, L. johnsonii NCC 533; lpl, L. plantarum WCFS1; lre, L. reuteri DSM 20016; lrf, L. reuteri JCM 1112; lrh, L. rhamnosus HN001; lsa, L. sakei subsp. sakei 23K; lsl, L. salivarius UCC118; llm, L. lactis subsp. cremoris MG1363; llc, L. lactis subsp. cremoris SK11; lla, L. lactis subsp. lactis IL1403; lci, Leuconostoc citreum KM20; lme, L. mesenteroides subsp. mesenteroides ATCC 8293; ooe, Oenococcus oeni PSU-1; ppe, P. pentosaceus ATCC 25745; sag, Streptococcus agalactiae 2603 (serotype V); sak, S. agalactiae A909 (serotype Ia); san, S. agalactiae NEM316 (serotype III); seu, Streptococcus equi subsp. equi 4047; seq, Streptococcus equi subsp. zooepidemicus ; sez, S. equi subsp. zooepidemicus MGCS10565; sgo, Streptococcus gordonii str. Challis substr. CH1; smu, Streptococcus mutans UA159; spd, Streptococcus pneumoniae D39; spr, S. pneumoniae R6; spn, S. pneumoniae TIGR4; spz, Streptococcus pyogenes MGAS5005 (serotype M1); spm, S. pyogenes MGAS8232 (serotype M18); spy, S. pyogenes SF370 (serotype M1); ssa, Streptococcus sanguinis SK36; ssu, Streptococcus suis 05ZYH33; ssv, S. suis 98HAH33; stc, S. thermophilus CNRZ1066; ste, S. thermophilus LMD-9; stl, S. thermophilus LMG18311; and sub, Streptococcus uberis 0140J.

    Journal: Genome Biology and Evolution

    Article Title: Genome Sequence and Comparative Genome Analysis of Lactobacillus casei : Insights into Their Niche-Associated Evolution

    doi: 10.1093/gbe/evp019

    Figure Lengend Snippet: Minimum evolution phylogenetic trees for ( a ) concatenated alignment of four subunits (α, β, β′, and δ) of the RNA polymerase, ( b ) lactocepin, ( c ) PepN, ( d ) PepX, (e) PepC/E, and ( f ) PepO from 45 LAB strains. Bacillus and Bifidobacteria are used as outgroups. Bootstrap values on the bifurcating branches are based on 1,000 random bootstrap replicates for the consensus tree. Strains that contain both PepC and PepE are circled in the RNA polymerase tree ( a ). Strains representing different genera are color coded; Lactobacillus is shown in red, Streptococcus in blue, Lactococcus in green, Leuconostoc in brown, and the rest ( Oenococcus , Enterococcus , and Pediococcus ) in black. Gene ID is given for strains with more than one homolog. Strain code: efa, Enterococcus faecalis V583; lac, L. acidophilus NCFM; lbr, L. brevis ATCC 367; lca, L. casei ATCC 334; lcb, L. casei BL23; ldb, L. delbrueckii ATCC 11842; lbu, L. delbrueckii ATCC BAA-365; lfe, L. fermentum IFO3956; lga, L. gasseri ATCC 33323; lhe, L. helveticus DPC 4571; ljo, L. johnsonii NCC 533; lpl, L. plantarum WCFS1; lre, L. reuteri DSM 20016; lrf, L. reuteri JCM 1112; lrh, L. rhamnosus HN001; lsa, L. sakei subsp. sakei 23K; lsl, L. salivarius UCC118; llm, L. lactis subsp. cremoris MG1363; llc, L. lactis subsp. cremoris SK11; lla, L. lactis subsp. lactis IL1403; lci, Leuconostoc citreum KM20; lme, L. mesenteroides subsp. mesenteroides ATCC 8293; ooe, Oenococcus oeni PSU-1; ppe, P. pentosaceus ATCC 25745; sag, Streptococcus agalactiae 2603 (serotype V); sak, S. agalactiae A909 (serotype Ia); san, S. agalactiae NEM316 (serotype III); seu, Streptococcus equi subsp. equi 4047; seq, Streptococcus equi subsp. zooepidemicus ; sez, S. equi subsp. zooepidemicus MGCS10565; sgo, Streptococcus gordonii str. Challis substr. CH1; smu, Streptococcus mutans UA159; spd, Streptococcus pneumoniae D39; spr, S. pneumoniae R6; spn, S. pneumoniae TIGR4; spz, Streptococcus pyogenes MGAS5005 (serotype M1); spm, S. pyogenes MGAS8232 (serotype M18); spy, S. pyogenes SF370 (serotype M1); ssa, Streptococcus sanguinis SK36; ssu, Streptococcus suis 05ZYH33; ssv, S. suis 98HAH33; stc, S. thermophilus CNRZ1066; ste, S. thermophilus LMD-9; stl, S. thermophilus LMG18311; and sub, Streptococcus uberis 0140J.

    Article Snippet: Instead, LACR_C42 clustered with lactocepins from L. casei ATCC 334 (LSEI 2270) and L. casei BL23 (LCABL 24520).

    Techniques:

    Genome comparison between L. casei strains ATCC 334 (top) and BL23 (bottom). GIs of more than 5 kb in each genome are numbered. Homologous genomic sequences (BlastN matches) are indicated by red (same orientation) and blue (inversion) lines between the chromosomes.

    Journal: Genome Biology and Evolution

    Article Title: Genome Sequence and Comparative Genome Analysis of Lactobacillus casei : Insights into Their Niche-Associated Evolution

    doi: 10.1093/gbe/evp019

    Figure Lengend Snippet: Genome comparison between L. casei strains ATCC 334 (top) and BL23 (bottom). GIs of more than 5 kb in each genome are numbered. Homologous genomic sequences (BlastN matches) are indicated by red (same orientation) and blue (inversion) lines between the chromosomes.

    Article Snippet: Instead, LACR_C42 clustered with lactocepins from L. casei ATCC 334 (LSEI 2270) and L. casei BL23 (LCABL 24520).

    Techniques: Genomic Sequencing

    Journal: Genome Biology and Evolution

    Article Title: Genome Sequence and Comparative Genome Analysis of Lactobacillus casei : Insights into Their Niche-Associated Evolution

    doi: 10.1093/gbe/evp019

    Figure Lengend Snippet: Lactobacillus casei ATCC 334-Specific CDS Revealed by Comparative Genome Hybridization

    Article Snippet: Instead, LACR_C42 clustered with lactocepins from L. casei ATCC 334 (LSEI 2270) and L. casei BL23 (LCABL 24520).

    Techniques: Methylation

    Minimum evolution phylogenetic trees for ( a ) concatenated alignment of four subunits (α, β, β′, and δ) of the RNA polymerase, ( b ) lactocepin, ( c ) PepN, ( d ) PepX, (e) PepC/E, and ( f ) PepO from 45 LAB strains. Bacillus and Bifidobacteria are used as outgroups. Bootstrap values on the bifurcating branches are based on 1,000 random bootstrap replicates for the consensus tree. Strains that contain both PepC and PepE are circled in the RNA polymerase tree ( a ). Strains representing different genera are color coded; Lactobacillus is shown in red, Streptococcus in blue, Lactococcus in green, Leuconostoc in brown, and the rest ( Oenococcus , Enterococcus , and Pediococcus ) in black. Gene ID is given for strains with more than one homolog. Strain code: efa, Enterococcus faecalis V583; lac, L. acidophilus NCFM; lbr, L. brevis ATCC 367; lca, L. casei ATCC 334; lcb, L. casei BL23; ldb, L. delbrueckii ATCC 11842; lbu, L. delbrueckii ATCC BAA-365; lfe, L. fermentum IFO3956; lga, L. gasseri ATCC 33323; lhe, L. helveticus DPC 4571; ljo, L. johnsonii NCC 533; lpl, L. plantarum WCFS1; lre, L. reuteri DSM 20016; lrf, L. reuteri JCM 1112; lrh, L. rhamnosus HN001; lsa, L. sakei subsp. sakei 23K; lsl, L. salivarius UCC118; llm, L. lactis subsp. cremoris MG1363; llc, L. lactis subsp. cremoris SK11; lla, L. lactis subsp. lactis IL1403; lci, Leuconostoc citreum KM20; lme, L. mesenteroides subsp. mesenteroides ATCC 8293; ooe, Oenococcus oeni PSU-1; ppe, P. pentosaceus ATCC 25745; sag, Streptococcus agalactiae 2603 (serotype V); sak, S. agalactiae A909 (serotype Ia); san, S. agalactiae NEM316 (serotype III); seu, Streptococcus equi subsp. equi 4047; seq, Streptococcus equi subsp. zooepidemicus ; sez, S. equi subsp. zooepidemicus MGCS10565; sgo, Streptococcus gordonii str. Challis substr. CH1; smu, Streptococcus mutans UA159; spd, Streptococcus pneumoniae D39; spr, S. pneumoniae R6; spn, S. pneumoniae TIGR4; spz, Streptococcus pyogenes MGAS5005 (serotype M1); spm, S. pyogenes MGAS8232 (serotype M18); spy, S. pyogenes SF370 (serotype M1); ssa, Streptococcus sanguinis SK36; ssu, Streptococcus suis 05ZYH33; ssv, S. suis 98HAH33; stc, S. thermophilus CNRZ1066; ste, S. thermophilus LMD-9; stl, S. thermophilus LMG18311; and sub, Streptococcus uberis 0140J.

    Journal: Genome Biology and Evolution

    Article Title: Genome Sequence and Comparative Genome Analysis of Lactobacillus casei : Insights into Their Niche-Associated Evolution

    doi: 10.1093/gbe/evp019

    Figure Lengend Snippet: Minimum evolution phylogenetic trees for ( a ) concatenated alignment of four subunits (α, β, β′, and δ) of the RNA polymerase, ( b ) lactocepin, ( c ) PepN, ( d ) PepX, (e) PepC/E, and ( f ) PepO from 45 LAB strains. Bacillus and Bifidobacteria are used as outgroups. Bootstrap values on the bifurcating branches are based on 1,000 random bootstrap replicates for the consensus tree. Strains that contain both PepC and PepE are circled in the RNA polymerase tree ( a ). Strains representing different genera are color coded; Lactobacillus is shown in red, Streptococcus in blue, Lactococcus in green, Leuconostoc in brown, and the rest ( Oenococcus , Enterococcus , and Pediococcus ) in black. Gene ID is given for strains with more than one homolog. Strain code: efa, Enterococcus faecalis V583; lac, L. acidophilus NCFM; lbr, L. brevis ATCC 367; lca, L. casei ATCC 334; lcb, L. casei BL23; ldb, L. delbrueckii ATCC 11842; lbu, L. delbrueckii ATCC BAA-365; lfe, L. fermentum IFO3956; lga, L. gasseri ATCC 33323; lhe, L. helveticus DPC 4571; ljo, L. johnsonii NCC 533; lpl, L. plantarum WCFS1; lre, L. reuteri DSM 20016; lrf, L. reuteri JCM 1112; lrh, L. rhamnosus HN001; lsa, L. sakei subsp. sakei 23K; lsl, L. salivarius UCC118; llm, L. lactis subsp. cremoris MG1363; llc, L. lactis subsp. cremoris SK11; lla, L. lactis subsp. lactis IL1403; lci, Leuconostoc citreum KM20; lme, L. mesenteroides subsp. mesenteroides ATCC 8293; ooe, Oenococcus oeni PSU-1; ppe, P. pentosaceus ATCC 25745; sag, Streptococcus agalactiae 2603 (serotype V); sak, S. agalactiae A909 (serotype Ia); san, S. agalactiae NEM316 (serotype III); seu, Streptococcus equi subsp. equi 4047; seq, Streptococcus equi subsp. zooepidemicus ; sez, S. equi subsp. zooepidemicus MGCS10565; sgo, Streptococcus gordonii str. Challis substr. CH1; smu, Streptococcus mutans UA159; spd, Streptococcus pneumoniae D39; spr, S. pneumoniae R6; spn, S. pneumoniae TIGR4; spz, Streptococcus pyogenes MGAS5005 (serotype M1); spm, S. pyogenes MGAS8232 (serotype M18); spy, S. pyogenes SF370 (serotype M1); ssa, Streptococcus sanguinis SK36; ssu, Streptococcus suis 05ZYH33; ssv, S. suis 98HAH33; stc, S. thermophilus CNRZ1066; ste, S. thermophilus LMD-9; stl, S. thermophilus LMG18311; and sub, Streptococcus uberis 0140J.

    Article Snippet: Lactobacillus casei ATCC 334 grows well in milk and its genome contains three CDS for lactocepin (LSEI_0465, 0468, and 2270), which belong to two different types of lactocepin: type PrtP (LSEI_2270), which was first observed in L. lactis , and type PrtR (LSEI_0465 and 0468), first observed in L. rhamnosus .

    Techniques:

    Intraspecific Hypervariable Regions in L. casei

    Journal: Genome Biology and Evolution

    Article Title: Genome Sequence and Comparative Genome Analysis of Lactobacillus casei : Insights into Their Niche-Associated Evolution

    doi: 10.1093/gbe/evp019

    Figure Lengend Snippet: Intraspecific Hypervariable Regions in L. casei

    Article Snippet: Lactobacillus casei ATCC 334 grows well in milk and its genome contains three CDS for lactocepin (LSEI_0465, 0468, and 2270), which belong to two different types of lactocepin: type PrtP (LSEI_2270), which was first observed in L. lactis , and type PrtR (LSEI_0465 and 0468), first observed in L. rhamnosus .

    Techniques:

    Minimum evolution phylogenetic trees for ( a ) concatenated alignment of four subunits (α, β, β′, and δ) of the RNA polymerase, ( b ) lactocepin, ( c ) PepN, ( d ) PepX, (e) PepC/E, and ( f ) PepO from 45 LAB strains. Bacillus and Bifidobacteria are used as outgroups. Bootstrap values on the bifurcating branches are based on 1,000 random bootstrap replicates for the consensus tree. Strains that contain both PepC and PepE are circled in the RNA polymerase tree ( a ). Strains representing different genera are color coded; Lactobacillus is shown in red, Streptococcus in blue, Lactococcus in green, Leuconostoc in brown, and the rest ( Oenococcus , Enterococcus , and Pediococcus ) in black. Gene ID is given for strains with more than one homolog. Strain code: efa, Enterococcus faecalis V583; lac, L. acidophilus NCFM; lbr, L. brevis ATCC 367; lca, L. casei ATCC 334; lcb, L. casei BL23; ldb, L. delbrueckii ATCC 11842; lbu, L. delbrueckii ATCC BAA-365; lfe, L. fermentum IFO3956; lga, L. gasseri ATCC 33323; lhe, L. helveticus DPC 4571; ljo, L. johnsonii NCC 533; lpl, L. plantarum WCFS1; lre, L. reuteri DSM 20016; lrf, L. reuteri JCM 1112; lrh, L. rhamnosus HN001; lsa, L. sakei subsp. sakei 23K; lsl, L. salivarius UCC118; llm, L. lactis subsp. cremoris MG1363; llc, L. lactis subsp. cremoris SK11; lla, L. lactis subsp. lactis IL1403; lci, Leuconostoc citreum KM20; lme, L. mesenteroides subsp. mesenteroides ATCC 8293; ooe, Oenococcus oeni PSU-1; ppe, P. pentosaceus ATCC 25745; sag, Streptococcus agalactiae 2603 (serotype V); sak, S. agalactiae A909 (serotype Ia); san, S. agalactiae NEM316 (serotype III); seu, Streptococcus equi subsp. equi 4047; seq, Streptococcus equi subsp. zooepidemicus ; sez, S. equi subsp. zooepidemicus MGCS10565; sgo, Streptococcus gordonii str. Challis substr. CH1; smu, Streptococcus mutans UA159; spd, Streptococcus pneumoniae D39; spr, S. pneumoniae R6; spn, S. pneumoniae TIGR4; spz, Streptococcus pyogenes MGAS5005 (serotype M1); spm, S. pyogenes MGAS8232 (serotype M18); spy, S. pyogenes SF370 (serotype M1); ssa, Streptococcus sanguinis SK36; ssu, Streptococcus suis 05ZYH33; ssv, S. suis 98HAH33; stc, S. thermophilus CNRZ1066; ste, S. thermophilus LMD-9; stl, S. thermophilus LMG18311; and sub, Streptococcus uberis 0140J.

    Journal: Genome Biology and Evolution

    Article Title: Genome Sequence and Comparative Genome Analysis of Lactobacillus casei : Insights into Their Niche-Associated Evolution

    doi: 10.1093/gbe/evp019

    Figure Lengend Snippet: Minimum evolution phylogenetic trees for ( a ) concatenated alignment of four subunits (α, β, β′, and δ) of the RNA polymerase, ( b ) lactocepin, ( c ) PepN, ( d ) PepX, (e) PepC/E, and ( f ) PepO from 45 LAB strains. Bacillus and Bifidobacteria are used as outgroups. Bootstrap values on the bifurcating branches are based on 1,000 random bootstrap replicates for the consensus tree. Strains that contain both PepC and PepE are circled in the RNA polymerase tree ( a ). Strains representing different genera are color coded; Lactobacillus is shown in red, Streptococcus in blue, Lactococcus in green, Leuconostoc in brown, and the rest ( Oenococcus , Enterococcus , and Pediococcus ) in black. Gene ID is given for strains with more than one homolog. Strain code: efa, Enterococcus faecalis V583; lac, L. acidophilus NCFM; lbr, L. brevis ATCC 367; lca, L. casei ATCC 334; lcb, L. casei BL23; ldb, L. delbrueckii ATCC 11842; lbu, L. delbrueckii ATCC BAA-365; lfe, L. fermentum IFO3956; lga, L. gasseri ATCC 33323; lhe, L. helveticus DPC 4571; ljo, L. johnsonii NCC 533; lpl, L. plantarum WCFS1; lre, L. reuteri DSM 20016; lrf, L. reuteri JCM 1112; lrh, L. rhamnosus HN001; lsa, L. sakei subsp. sakei 23K; lsl, L. salivarius UCC118; llm, L. lactis subsp. cremoris MG1363; llc, L. lactis subsp. cremoris SK11; lla, L. lactis subsp. lactis IL1403; lci, Leuconostoc citreum KM20; lme, L. mesenteroides subsp. mesenteroides ATCC 8293; ooe, Oenococcus oeni PSU-1; ppe, P. pentosaceus ATCC 25745; sag, Streptococcus agalactiae 2603 (serotype V); sak, S. agalactiae A909 (serotype Ia); san, S. agalactiae NEM316 (serotype III); seu, Streptococcus equi subsp. equi 4047; seq, Streptococcus equi subsp. zooepidemicus ; sez, S. equi subsp. zooepidemicus MGCS10565; sgo, Streptococcus gordonii str. Challis substr. CH1; smu, Streptococcus mutans UA159; spd, Streptococcus pneumoniae D39; spr, S. pneumoniae R6; spn, S. pneumoniae TIGR4; spz, Streptococcus pyogenes MGAS5005 (serotype M1); spm, S. pyogenes MGAS8232 (serotype M18); spy, S. pyogenes SF370 (serotype M1); ssa, Streptococcus sanguinis SK36; ssu, Streptococcus suis 05ZYH33; ssv, S. suis 98HAH33; stc, S. thermophilus CNRZ1066; ste, S. thermophilus LMD-9; stl, S. thermophilus LMG18311; and sub, Streptococcus uberis 0140J.

    Article Snippet: Lactobacillus casei ATCC 334 grows well in milk and its genome contains three CDS for lactocepin (LSEI_0465, 0468, and 2270), which belong to two different types of lactocepin: type PrtP (LSEI_2270), which was first observed in L. lactis , and type PrtR (LSEI_0465 and 0468), first observed in L. rhamnosus .

    Techniques:

    Intraspecific Hypervariable Regions in L. casei

    Journal: Genome Biology and Evolution

    Article Title: Genome Sequence and Comparative Genome Analysis of Lactobacillus casei : Insights into Their Niche-Associated Evolution

    doi: 10.1093/gbe/evp019

    Figure Lengend Snippet: Intraspecific Hypervariable Regions in L. casei

    Article Snippet: Lactobacillus casei ATCC 334 grows well in milk and its genome contains three CDS for lactocepin (LSEI_0465, 0468, and 2270), which belong to two different types of lactocepin: type PrtP (LSEI_2270), which was first observed in L. lactis , and type PrtR (LSEI_0465 and 0468), first observed in L. rhamnosus .

    Techniques: