acidovorax sp  (ATCC)


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    ATCC acidovorax sp
    List of DXR-II and DLO related sequences examined in this study
    Acidovorax Sp, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme"

    Article Title: Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme

    Journal: BMC Evolutionary Biology

    doi: 10.1186/1471-2148-13-180

    List of DXR-II and DLO related sequences examined in this study
    Figure Legend Snippet: List of DXR-II and DLO related sequences examined in this study

    Techniques Used:

    acidovorax sp  (ATCC)


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    ATCC acidovorax sp
    List of DXR-II and DLO related sequences examined in this study
    Acidovorax Sp, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme"

    Article Title: Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme

    Journal: BMC Evolutionary Biology

    doi: 10.1186/1471-2148-13-180

    List of DXR-II and DLO related sequences examined in this study
    Figure Legend Snippet: List of DXR-II and DLO related sequences examined in this study

    Techniques Used:

    acidovorax sp  (ATCC)


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    ATCC acidovorax sp
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    acidovorax sp  (ATCC)


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    ATCC acidovorax sp
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    acidovorax sp  (ATCC)


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    ATCC acidovorax sp
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    acidovorax sp  (ATCC)


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    ATCC acidovorax sp
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    acidovorax sp  (ATCC)


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    ATCC acidovorax sp
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    acidovorax sp  (ATCC)


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    ATCC acidovorax sp
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    acidovorax sp  (ATCC)


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    ATCC acidovorax sp
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    acidovorax sp  (ATCC)


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    ATCC acidovorax sp
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    uncultured acidovorax sp  (ATCC)


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    ATCC uncultured acidovorax sp
    Strains selected in study
    Uncultured Acidovorax Sp, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Deciphering the evolutionary affiliations among bacterial strains ( Pseudomonas and Frankia sp.) inhabiting same ecological niche using virtual RFLP and simulation-based approaches"

    Article Title: Deciphering the evolutionary affiliations among bacterial strains ( Pseudomonas and Frankia sp.) inhabiting same ecological niche using virtual RFLP and simulation-based approaches

    Journal: 3 Biotech

    doi: 10.1007/s13205-016-0488-5

    Strains selected in study
    Figure Legend Snippet: Strains selected in study

    Techniques Used:

    The evolutionary relation between strains was inferred using the Bayesian phylogenetic tree. 1,000,000 generations for BI (Bayesian inferences) using the GTR+ G model was done. Branches corresponding to partitions reproduced in less than 50 % bootstrap replicates are collapsed. Node bars and branch length were given, arrow represents selected nodes for bootstrap support value estimation. Pseudomonas sp. IND1 (S1), Pseudomonas sp. IND2 (S2), Pseudomonas sp. IND3 (S3), Pseudomonas sp. IND4 (S4), Uncultured Acidovorax sp. clone (S5), Uncultured Comamonas sp. (S6), Frankia sp. G2 (S7), Frankia sp. (S8), Frankia sp. FE12 (S9), Uncultured bacterial sp. (S10), Pseudomonas sp. AMD3 (S11), Pseudomonas stutzeri strain (S12), Uncultured Pseudomonas sp. (S13), Pseudomonas stutzeri ATCC (S14), Frankia sp. BMG5.11 (S15), Frankia sp. Hsli 2 (S16), Frankia sp. Hsli 8 (S17), Frankia sp. Hsli 9 (S18), Frankia sp. Hsli 10 (S19)
    Figure Legend Snippet: The evolutionary relation between strains was inferred using the Bayesian phylogenetic tree. 1,000,000 generations for BI (Bayesian inferences) using the GTR+ G model was done. Branches corresponding to partitions reproduced in less than 50 % bootstrap replicates are collapsed. Node bars and branch length were given, arrow represents selected nodes for bootstrap support value estimation. Pseudomonas sp. IND1 (S1), Pseudomonas sp. IND2 (S2), Pseudomonas sp. IND3 (S3), Pseudomonas sp. IND4 (S4), Uncultured Acidovorax sp. clone (S5), Uncultured Comamonas sp. (S6), Frankia sp. G2 (S7), Frankia sp. (S8), Frankia sp. FE12 (S9), Uncultured bacterial sp. (S10), Pseudomonas sp. AMD3 (S11), Pseudomonas stutzeri strain (S12), Uncultured Pseudomonas sp. (S13), Pseudomonas stutzeri ATCC (S14), Frankia sp. BMG5.11 (S15), Frankia sp. Hsli 2 (S16), Frankia sp. Hsli 8 (S17), Frankia sp. Hsli 9 (S18), Frankia sp. Hsli 10 (S19)

    Techniques Used:

    PCA analysis of RFLP patterns: uncultured Pseudomonas sp. (j) Frankia sp. FE12 (c) Uncultured bacterial sp. (g) Pseudomonas sp. IND3 (n) Pseudomonas sp. IND1 (l) uncultured Acidovorax sp. clone (e) Pseudomonas stutzeri strain TH-31 (i) Pseudomonas sp. IND2 (m) Pseudomonas stutzeri ATCC 17588 (k) Pseudomonas sp. AMD3 (h) Pseudomonas sp. IND4 (o) Frankia sp. G2 (a) Uncultured Comamonas sp. (f) Frankia sp. (b) Frankia sp. BMG5.11 (d) Frankia sp. Hsli 2 (p) Frankia sp. Hsli 8 (q) Frankia sp. Hsli 9 (r) Frankia sp. Hsli 10 (s)
    Figure Legend Snippet: PCA analysis of RFLP patterns: uncultured Pseudomonas sp. (j) Frankia sp. FE12 (c) Uncultured bacterial sp. (g) Pseudomonas sp. IND3 (n) Pseudomonas sp. IND1 (l) uncultured Acidovorax sp. clone (e) Pseudomonas stutzeri strain TH-31 (i) Pseudomonas sp. IND2 (m) Pseudomonas stutzeri ATCC 17588 (k) Pseudomonas sp. AMD3 (h) Pseudomonas sp. IND4 (o) Frankia sp. G2 (a) Uncultured Comamonas sp. (f) Frankia sp. (b) Frankia sp. BMG5.11 (d) Frankia sp. Hsli 2 (p) Frankia sp. Hsli 8 (q) Frankia sp. Hsli 9 (r) Frankia sp. Hsli 10 (s)

    Techniques Used:

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    ATCC acidovorax sp
    List of DXR-II and DLO related sequences examined in this study
    Acidovorax Sp, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC uncultured acidovorax sp
    Strains selected in study
    Uncultured Acidovorax Sp, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    List of DXR-II and DLO related sequences examined in this study

    Journal: BMC Evolutionary Biology

    Article Title: Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme

    doi: 10.1186/1471-2148-13-180

    Figure Lengend Snippet: List of DXR-II and DLO related sequences examined in this study

    Article Snippet: , Finegoldia magna ATCC 29328 , 58867 , , gi|169824217|ref|YP_001691828.1 , Acidovorax sp. JS42 , 58427 , gi|121594656|ref|YP_986552.1.

    Techniques:

    Strains selected in study

    Journal: 3 Biotech

    Article Title: Deciphering the evolutionary affiliations among bacterial strains ( Pseudomonas and Frankia sp.) inhabiting same ecological niche using virtual RFLP and simulation-based approaches

    doi: 10.1007/s13205-016-0488-5

    Figure Lengend Snippet: Strains selected in study

    Article Snippet: Pseudomonas sp. IND1 (S1), Pseudomonas sp. IND2 (S2), Pseudomonas sp. IND3 (S3), Pseudomonas sp. IND4 (S4), Uncultured Acidovorax sp. clone (S5), Uncultured Comamonas sp. (S6), Frankia sp. G2 (S7), Frankia sp. (S8), Frankia sp. FE12 (S9), Uncultured bacterial sp. (S10), Pseudomonas sp. AMD3 (S11), Pseudomonas stutzeri strain (S12), Uncultured Pseudomonas sp. (S13), Pseudomonas stutzeri ATCC (S14), Frankia sp. BMG5.11 (S15), Frankia sp. Hsli 2 (S16), Frankia sp. Hsli 8 (S17), Frankia sp. Hsli 9 (S18), Frankia sp. Hsli 10 (S19) The tree revealed three major clusters (one large cluster with three sub clusters), comprised of mix assemblage of strains with uncultured bacterium (HM363289), Pseudomonas sp. (EU600210), Pseudomonas stutzeri (KF783212) Pseudomonas stutzeri (AF094748) and uncultured Pseudomonas (KF733608) in one subclade where uncultured Acidovorax sp. as well as uncultured Comamonas sp. form another group.

    Techniques:

    The evolutionary relation between strains was inferred using the Bayesian phylogenetic tree. 1,000,000 generations for BI (Bayesian inferences) using the GTR+ G model was done. Branches corresponding to partitions reproduced in less than 50 % bootstrap replicates are collapsed. Node bars and branch length were given, arrow represents selected nodes for bootstrap support value estimation. Pseudomonas sp. IND1 (S1), Pseudomonas sp. IND2 (S2), Pseudomonas sp. IND3 (S3), Pseudomonas sp. IND4 (S4), Uncultured Acidovorax sp. clone (S5), Uncultured Comamonas sp. (S6), Frankia sp. G2 (S7), Frankia sp. (S8), Frankia sp. FE12 (S9), Uncultured bacterial sp. (S10), Pseudomonas sp. AMD3 (S11), Pseudomonas stutzeri strain (S12), Uncultured Pseudomonas sp. (S13), Pseudomonas stutzeri ATCC (S14), Frankia sp. BMG5.11 (S15), Frankia sp. Hsli 2 (S16), Frankia sp. Hsli 8 (S17), Frankia sp. Hsli 9 (S18), Frankia sp. Hsli 10 (S19)

    Journal: 3 Biotech

    Article Title: Deciphering the evolutionary affiliations among bacterial strains ( Pseudomonas and Frankia sp.) inhabiting same ecological niche using virtual RFLP and simulation-based approaches

    doi: 10.1007/s13205-016-0488-5

    Figure Lengend Snippet: The evolutionary relation between strains was inferred using the Bayesian phylogenetic tree. 1,000,000 generations for BI (Bayesian inferences) using the GTR+ G model was done. Branches corresponding to partitions reproduced in less than 50 % bootstrap replicates are collapsed. Node bars and branch length were given, arrow represents selected nodes for bootstrap support value estimation. Pseudomonas sp. IND1 (S1), Pseudomonas sp. IND2 (S2), Pseudomonas sp. IND3 (S3), Pseudomonas sp. IND4 (S4), Uncultured Acidovorax sp. clone (S5), Uncultured Comamonas sp. (S6), Frankia sp. G2 (S7), Frankia sp. (S8), Frankia sp. FE12 (S9), Uncultured bacterial sp. (S10), Pseudomonas sp. AMD3 (S11), Pseudomonas stutzeri strain (S12), Uncultured Pseudomonas sp. (S13), Pseudomonas stutzeri ATCC (S14), Frankia sp. BMG5.11 (S15), Frankia sp. Hsli 2 (S16), Frankia sp. Hsli 8 (S17), Frankia sp. Hsli 9 (S18), Frankia sp. Hsli 10 (S19)

    Article Snippet: Pseudomonas sp. IND1 (S1), Pseudomonas sp. IND2 (S2), Pseudomonas sp. IND3 (S3), Pseudomonas sp. IND4 (S4), Uncultured Acidovorax sp. clone (S5), Uncultured Comamonas sp. (S6), Frankia sp. G2 (S7), Frankia sp. (S8), Frankia sp. FE12 (S9), Uncultured bacterial sp. (S10), Pseudomonas sp. AMD3 (S11), Pseudomonas stutzeri strain (S12), Uncultured Pseudomonas sp. (S13), Pseudomonas stutzeri ATCC (S14), Frankia sp. BMG5.11 (S15), Frankia sp. Hsli 2 (S16), Frankia sp. Hsli 8 (S17), Frankia sp. Hsli 9 (S18), Frankia sp. Hsli 10 (S19) The tree revealed three major clusters (one large cluster with three sub clusters), comprised of mix assemblage of strains with uncultured bacterium (HM363289), Pseudomonas sp. (EU600210), Pseudomonas stutzeri (KF783212) Pseudomonas stutzeri (AF094748) and uncultured Pseudomonas (KF733608) in one subclade where uncultured Acidovorax sp. as well as uncultured Comamonas sp. form another group.

    Techniques:

    PCA analysis of RFLP patterns: uncultured Pseudomonas sp. (j) Frankia sp. FE12 (c) Uncultured bacterial sp. (g) Pseudomonas sp. IND3 (n) Pseudomonas sp. IND1 (l) uncultured Acidovorax sp. clone (e) Pseudomonas stutzeri strain TH-31 (i) Pseudomonas sp. IND2 (m) Pseudomonas stutzeri ATCC 17588 (k) Pseudomonas sp. AMD3 (h) Pseudomonas sp. IND4 (o) Frankia sp. G2 (a) Uncultured Comamonas sp. (f) Frankia sp. (b) Frankia sp. BMG5.11 (d) Frankia sp. Hsli 2 (p) Frankia sp. Hsli 8 (q) Frankia sp. Hsli 9 (r) Frankia sp. Hsli 10 (s)

    Journal: 3 Biotech

    Article Title: Deciphering the evolutionary affiliations among bacterial strains ( Pseudomonas and Frankia sp.) inhabiting same ecological niche using virtual RFLP and simulation-based approaches

    doi: 10.1007/s13205-016-0488-5

    Figure Lengend Snippet: PCA analysis of RFLP patterns: uncultured Pseudomonas sp. (j) Frankia sp. FE12 (c) Uncultured bacterial sp. (g) Pseudomonas sp. IND3 (n) Pseudomonas sp. IND1 (l) uncultured Acidovorax sp. clone (e) Pseudomonas stutzeri strain TH-31 (i) Pseudomonas sp. IND2 (m) Pseudomonas stutzeri ATCC 17588 (k) Pseudomonas sp. AMD3 (h) Pseudomonas sp. IND4 (o) Frankia sp. G2 (a) Uncultured Comamonas sp. (f) Frankia sp. (b) Frankia sp. BMG5.11 (d) Frankia sp. Hsli 2 (p) Frankia sp. Hsli 8 (q) Frankia sp. Hsli 9 (r) Frankia sp. Hsli 10 (s)

    Article Snippet: Pseudomonas sp. IND1 (S1), Pseudomonas sp. IND2 (S2), Pseudomonas sp. IND3 (S3), Pseudomonas sp. IND4 (S4), Uncultured Acidovorax sp. clone (S5), Uncultured Comamonas sp. (S6), Frankia sp. G2 (S7), Frankia sp. (S8), Frankia sp. FE12 (S9), Uncultured bacterial sp. (S10), Pseudomonas sp. AMD3 (S11), Pseudomonas stutzeri strain (S12), Uncultured Pseudomonas sp. (S13), Pseudomonas stutzeri ATCC (S14), Frankia sp. BMG5.11 (S15), Frankia sp. Hsli 2 (S16), Frankia sp. Hsli 8 (S17), Frankia sp. Hsli 9 (S18), Frankia sp. Hsli 10 (S19) The tree revealed three major clusters (one large cluster with three sub clusters), comprised of mix assemblage of strains with uncultured bacterium (HM363289), Pseudomonas sp. (EU600210), Pseudomonas stutzeri (KF783212) Pseudomonas stutzeri (AF094748) and uncultured Pseudomonas (KF733608) in one subclade where uncultured Acidovorax sp. as well as uncultured Comamonas sp. form another group.

    Techniques: