Journal: BMC Evolutionary Biology

Article Title: Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme

doi: 10.1186/1471-2148-13-180

Figure Lengend Snippet: List of DXR-II and DLO related sequences examined in this study

Article Snippet: , Finegoldia magna ATCC 29328 , 58867 , , gi|169824217|ref|YP_001691828.1 , Acidovorax sp. JS42 , 58427 , gi|121594656|ref|YP_986552.1.

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Journal: 3 Biotech

Article Title: Deciphering the evolutionary affiliations among bacterial strains ( Pseudomonas and Frankia sp.) inhabiting same ecological niche using virtual RFLP and simulation-based approaches

doi: 10.1007/s13205-016-0488-5

Figure Lengend Snippet: Strains selected in study

Article Snippet: Pseudomonas sp. IND1 (S1), Pseudomonas sp. IND2 (S2), Pseudomonas sp. IND3 (S3), Pseudomonas sp. IND4 (S4), Uncultured Acidovorax sp. clone (S5), Uncultured Comamonas sp. (S6), Frankia sp. G2 (S7), Frankia sp. (S8), Frankia sp. FE12 (S9), Uncultured bacterial sp. (S10), Pseudomonas sp. AMD3 (S11), Pseudomonas stutzeri strain (S12), Uncultured Pseudomonas sp. (S13), Pseudomonas stutzeri ATCC (S14), Frankia sp. BMG5.11 (S15), Frankia sp. Hsli 2 (S16), Frankia sp. Hsli 8 (S17), Frankia sp. Hsli 9 (S18), Frankia sp. Hsli 10 (S19) The tree revealed three major clusters (one large cluster with three sub clusters), comprised of mix assemblage of strains with uncultured bacterium (HM363289), Pseudomonas sp. (EU600210), Pseudomonas stutzeri (KF783212) Pseudomonas stutzeri (AF094748) and uncultured Pseudomonas (KF733608) in one subclade where uncultured Acidovorax sp. as well as uncultured Comamonas sp. form another group.

Techniques:

Journal: 3 Biotech

Article Title: Deciphering the evolutionary affiliations among bacterial strains ( Pseudomonas and Frankia sp.) inhabiting same ecological niche using virtual RFLP and simulation-based approaches

doi: 10.1007/s13205-016-0488-5

Figure Lengend Snippet: The evolutionary relation between strains was inferred using the Bayesian phylogenetic tree. 1,000,000 generations for BI (Bayesian inferences) using the GTR+ G model was done. Branches corresponding to partitions reproduced in less than 50 % bootstrap replicates are collapsed. Node bars and branch length were given, arrow represents selected nodes for bootstrap support value estimation. Pseudomonas sp. IND1 (S1), Pseudomonas sp. IND2 (S2), Pseudomonas sp. IND3 (S3), Pseudomonas sp. IND4 (S4), Uncultured Acidovorax sp. clone (S5), Uncultured Comamonas sp. (S6), Frankia sp. G2 (S7), Frankia sp. (S8), Frankia sp. FE12 (S9), Uncultured bacterial sp. (S10), Pseudomonas sp. AMD3 (S11), Pseudomonas stutzeri strain (S12), Uncultured Pseudomonas sp. (S13), Pseudomonas stutzeri ATCC (S14), Frankia sp. BMG5.11 (S15), Frankia sp. Hsli 2 (S16), Frankia sp. Hsli 8 (S17), Frankia sp. Hsli 9 (S18), Frankia sp. Hsli 10 (S19)

Article Snippet: Pseudomonas sp. IND1 (S1), Pseudomonas sp. IND2 (S2), Pseudomonas sp. IND3 (S3), Pseudomonas sp. IND4 (S4), Uncultured Acidovorax sp. clone (S5), Uncultured Comamonas sp. (S6), Frankia sp. G2 (S7), Frankia sp. (S8), Frankia sp. FE12 (S9), Uncultured bacterial sp. (S10), Pseudomonas sp. AMD3 (S11), Pseudomonas stutzeri strain (S12), Uncultured Pseudomonas sp. (S13), Pseudomonas stutzeri ATCC (S14), Frankia sp. BMG5.11 (S15), Frankia sp. Hsli 2 (S16), Frankia sp. Hsli 8 (S17), Frankia sp. Hsli 9 (S18), Frankia sp. Hsli 10 (S19) The tree revealed three major clusters (one large cluster with three sub clusters), comprised of mix assemblage of strains with uncultured bacterium (HM363289), Pseudomonas sp. (EU600210), Pseudomonas stutzeri (KF783212) Pseudomonas stutzeri (AF094748) and uncultured Pseudomonas (KF733608) in one subclade where uncultured Acidovorax sp. as well as uncultured Comamonas sp. form another group.

Techniques:

Journal: 3 Biotech

Article Title: Deciphering the evolutionary affiliations among bacterial strains ( Pseudomonas and Frankia sp.) inhabiting same ecological niche using virtual RFLP and simulation-based approaches

doi: 10.1007/s13205-016-0488-5

Figure Lengend Snippet: PCA analysis of RFLP patterns: uncultured Pseudomonas sp. (j) Frankia sp. FE12 (c) Uncultured bacterial sp. (g) Pseudomonas sp. IND3 (n) Pseudomonas sp. IND1 (l) uncultured Acidovorax sp. clone (e) Pseudomonas stutzeri strain TH-31 (i) Pseudomonas sp. IND2 (m) Pseudomonas stutzeri ATCC 17588 (k) Pseudomonas sp. AMD3 (h) Pseudomonas sp. IND4 (o) Frankia sp. G2 (a) Uncultured Comamonas sp. (f) Frankia sp. (b) Frankia sp. BMG5.11 (d) Frankia sp. Hsli 2 (p) Frankia sp. Hsli 8 (q) Frankia sp. Hsli 9 (r) Frankia sp. Hsli 10 (s)

Article Snippet: Pseudomonas sp. IND1 (S1), Pseudomonas sp. IND2 (S2), Pseudomonas sp. IND3 (S3), Pseudomonas sp. IND4 (S4), Uncultured Acidovorax sp. clone (S5), Uncultured Comamonas sp. (S6), Frankia sp. G2 (S7), Frankia sp. (S8), Frankia sp. FE12 (S9), Uncultured bacterial sp. (S10), Pseudomonas sp. AMD3 (S11), Pseudomonas stutzeri strain (S12), Uncultured Pseudomonas sp. (S13), Pseudomonas stutzeri ATCC (S14), Frankia sp. BMG5.11 (S15), Frankia sp. Hsli 2 (S16), Frankia sp. Hsli 8 (S17), Frankia sp. Hsli 9 (S18), Frankia sp. Hsli 10 (S19) The tree revealed three major clusters (one large cluster with three sub clusters), comprised of mix assemblage of strains with uncultured bacterium (HM363289), Pseudomonas sp. (EU600210), Pseudomonas stutzeri (KF783212) Pseudomonas stutzeri (AF094748) and uncultured Pseudomonas (KF733608) in one subclade where uncultured Acidovorax sp. as well as uncultured Comamonas sp. form another group.

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