eh ec mycobacterium rufum esc  (ATCC)

Journal: Frontiers in Microbiology

Article Title: Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera

doi: 10.3389/fmicb.2018.00067

Figure Lengend Snippet: Descriptions of new name combinations for species in the genus Mycolicibacter .

Article Snippet: Mycolicibacterium rufum comb. nov. (ru´fum. L. neut. adj. rufum ruddy or red, pertaining to the colony pigmentation of the type strain) , Basonym: Mycobacterium rufum Hennessee et al. 2009 The description of this taxon is as given by Hennessee et al. ( ). The type strain is JS14 = ATCC BAA-1377 = CIP 109273 = JCM 16372. .

Techniques: Isolation

Journal: Frontiers in Microbiology

Article Title: Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera

doi: 10.3389/fmicb.2018.00067

Figure Lengend Snippet: Descriptions of new name combinations for species in the genus Mycolicibacillus .

Article Snippet: Mycolicibacterium rufum comb. nov. (ru´fum. L. neut. adj. rufum ruddy or red, pertaining to the colony pigmentation of the type strain) , Basonym: Mycobacterium rufum Hennessee et al. 2009 The description of this taxon is as given by Hennessee et al. ( ). The type strain is JS14 = ATCC BAA-1377 = CIP 109273 = JCM 16372. .

Techniques:

Journal: Frontiers in Microbiology

Article Title: Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera

doi: 10.3389/fmicb.2018.00067

Figure Lengend Snippet: Descriptions of new name combinations for species in the genus Mycobacteroides .

Article Snippet: Mycolicibacterium rufum comb. nov. (ru´fum. L. neut. adj. rufum ruddy or red, pertaining to the colony pigmentation of the type strain) , Basonym: Mycobacterium rufum Hennessee et al. 2009 The description of this taxon is as given by Hennessee et al. ( ). The type strain is JS14 = ATCC BAA-1377 = CIP 109273 = JCM 16372. .

Techniques: Isolation

Journal: Frontiers in Microbiology

Article Title: Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera

doi: 10.3389/fmicb.2018.00067

Figure Lengend Snippet: Descriptions of new name combinations for species in the genus Mycolicibacterium .

Article Snippet: Mycolicibacterium rufum comb. nov. (ru´fum. L. neut. adj. rufum ruddy or red, pertaining to the colony pigmentation of the type strain) , Basonym: Mycobacterium rufum Hennessee et al. 2009 The description of this taxon is as given by Hennessee et al. ( ). The type strain is JS14 = ATCC BAA-1377 = CIP 109273 = JCM 16372. .

Techniques: Isolation, Infection

Journal: Standards in Genomic Sciences

Article Title: Draft genome sequence of Mycobacterium rufum JS14 T , a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii

doi: 10.1186/s40793-016-0167-5

Figure Lengend Snippet: A neighbor-joining phylogenetic tree depicting the position of M. rufum JS14 T (shown in boldface with an asterisk) relative to the other species within the genus Mycobacterium . In this genus, species carrying the full length of 16S rRNA gene sequence were selected from the NCBI database . The collected nucleotide sequences were aligned using ClustalW , and the phylogenetic tree was constructed using software MEGA version 6 by the neighbor-joining method with 1000 bootstrap replicates . The generated bootstrap values for each species are presented at the nodes, and the scale bar indicates 0.005 nucleotide changes per nucleotide position. The strains under study and their corresponding GenBank accession numbers for 16S rRNA genes are as follows: M. chlorophenolicum PCP-I [ , ] (NR_119093); M. gilvum Spyr1 [ , ] (NR_074644); M. gilvum PYR-GCK [ , ] (NR_074553); M. rhodesiae NBB3 (NR_102870); M. vanbaalenii PYR-1 (NR_074572); M. fluoranthenivorans FA4 [ , ] (NR_042224); M. wolinskyi 700010 (NR_119253); M. mageritense 938 (NR_042265); M. smegmatis str. MC2 155 [ , ] (NR_074726); M. flavescens ATCC 14474 [ , ] (NR_044815); M. novocastrense 73 (NR_029208); M. insubricum FI-06250 (NR_125525); M. florentinum FI-93171 (NR_042223); M. montefiorense ATCC BAA-256 [ , ] (NR_028808); M. confluentis 1389/90 (NR_042245); M. holsaticum 1406 (NR_028945); M. elephantis DSM 44368 (NR_025296); M. marinum M [ , ] (NR_074864); M. ulcerans Agy99 [ , ] (NR_074861); M. bovis BCG str. Pasteur 1173P2 [ , ] (NR_074838); M. canettii CIPT 140010059 (NR_074836); M. africanum GM041182 [ , ] (NR_074835)

Article Snippet: , (Type) strain: JS14 T (=ATCC BAA-1377 T , CIP 109273 T , JCM 16372 T , DSM 45406 T ) , TAS [ ] .

Techniques: Sequencing, Construct, Software, Generated

Journal: Standards in Genomic Sciences

Article Title: Draft genome sequence of Mycobacterium rufum JS14 T , a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii

doi: 10.1186/s40793-016-0167-5

Figure Lengend Snippet: A scanning electron micrograph of M. rufum JS14 T . The image was taken using a Field Emission Scanning Electron Microscope (SU8220; Hitachi, Japan) at an operating voltage of 10.0 kV. The scale bar represents 5.0 μm

Article Snippet: , (Type) strain: JS14 T (=ATCC BAA-1377 T , CIP 109273 T , JCM 16372 T , DSM 45406 T ) , TAS [ ] .

Techniques: Microscopy

Journal: Standards in Genomic Sciences

Article Title: Draft genome sequence of Mycobacterium rufum JS14 T , a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii

doi: 10.1186/s40793-016-0167-5

Figure Lengend Snippet: Classification and general features of M. rufum JS14 T [ 22 ]

Article Snippet: , (Type) strain: JS14 T (=ATCC BAA-1377 T , CIP 109273 T , JCM 16372 T , DSM 45406 T ) , TAS [ ] .

Techniques: Staining

Journal: Standards in Genomic Sciences

Article Title: Draft genome sequence of Mycobacterium rufum JS14 T , a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii

doi: 10.1186/s40793-016-0167-5

Figure Lengend Snippet: A graphical circular map of the M. rufum JS14 T genome. The circular map was generated using the BLAST Ring Image Generator software . From the inner circle to the outer circle: Genetic regions; GC content (black), and GC skew (purple/green), respectively

Article Snippet: , (Type) strain: JS14 T (=ATCC BAA-1377 T , CIP 109273 T , JCM 16372 T , DSM 45406 T ) , TAS [ ] .

Techniques: Generated, Software

Journal: Standards in Genomic Sciences

Article Title: Draft genome sequence of Mycobacterium rufum JS14 T , a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii

doi: 10.1186/s40793-016-0167-5

Figure Lengend Snippet: A neighbor-joining phylogenetic tree depicting the position of M. rufum JS14 T (shown in boldface with an asterisk) relative to the other species within the genus Mycobacterium . In this genus, species carrying the full length of 16S rRNA gene sequence were selected from the NCBI database . The collected nucleotide sequences were aligned using ClustalW , and the phylogenetic tree was constructed using software MEGA version 6 by the neighbor-joining method with 1000 bootstrap replicates . The generated bootstrap values for each species are presented at the nodes, and the scale bar indicates 0.005 nucleotide changes per nucleotide position. The strains under study and their corresponding GenBank accession numbers for 16S rRNA genes are as follows: M. chlorophenolicum PCP-I [ , ] (NR_119093); M. gilvum Spyr1 [ , ] (NR_074644); M. gilvum PYR-GCK [ , ] (NR_074553); M. rhodesiae NBB3 (NR_102870); M. vanbaalenii PYR-1 (NR_074572); M. fluoranthenivorans FA4 [ , ] (NR_042224); M. wolinskyi 700010 (NR_119253); M. mageritense 938 (NR_042265); M. smegmatis str. MC2 155 [ , ] (NR_074726); M. flavescens ATCC 14474 [ , ] (NR_044815); M. novocastrense 73 (NR_029208); M. insubricum FI-06250 (NR_125525); M. florentinum FI-93171 (NR_042223); M. montefiorense ATCC BAA-256 [ , ] (NR_028808); M. confluentis 1389/90 (NR_042245); M. holsaticum 1406 (NR_028945); M. elephantis DSM 44368 (NR_025296); M. marinum M [ , ] (NR_074864); M. ulcerans Agy99 [ , ] (NR_074861); M. bovis BCG str. Pasteur 1173P2 [ , ] (NR_074838); M. canettii CIPT 140010059 (NR_074836); M. africanum GM041182 [ , ] (NR_074835)

Article Snippet: Mycobacterium rufum JS14 T (=ATCC BAA-1377 T , CIP 109273 T , JCM 16372 T , DSM 45406 T ), a type strain of the species Mycobacterium rufum sp. . belonging to the family Mycobacteriaceae , was isolated from polycyclic aromatic hydrocarbon (PAH)-contaminated soil in Hilo (HI, USA) because it harbors the capability of degrading PAH.

Techniques: Sequencing, Construct, Software, Generated

Journal: Standards in Genomic Sciences

Article Title: Draft genome sequence of Mycobacterium rufum JS14 T , a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii

doi: 10.1186/s40793-016-0167-5

Figure Lengend Snippet: A scanning electron micrograph of M. rufum JS14 T . The image was taken using a Field Emission Scanning Electron Microscope (SU8220; Hitachi, Japan) at an operating voltage of 10.0 kV. The scale bar represents 5.0 μm

Article Snippet: Mycobacterium rufum JS14 T (=ATCC BAA-1377 T , CIP 109273 T , JCM 16372 T , DSM 45406 T ), a type strain of the species Mycobacterium rufum sp. . belonging to the family Mycobacteriaceae , was isolated from polycyclic aromatic hydrocarbon (PAH)-contaminated soil in Hilo (HI, USA) because it harbors the capability of degrading PAH.

Techniques: Microscopy

Journal: Standards in Genomic Sciences

Article Title: Draft genome sequence of Mycobacterium rufum JS14 T , a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii

doi: 10.1186/s40793-016-0167-5

Figure Lengend Snippet: Classification and general features of M. rufum JS14 T [ 22 ]

Article Snippet: Mycobacterium rufum JS14 T (=ATCC BAA-1377 T , CIP 109273 T , JCM 16372 T , DSM 45406 T ), a type strain of the species Mycobacterium rufum sp. . belonging to the family Mycobacteriaceae , was isolated from polycyclic aromatic hydrocarbon (PAH)-contaminated soil in Hilo (HI, USA) because it harbors the capability of degrading PAH.

Techniques: Staining

Journal: Standards in Genomic Sciences

Article Title: Draft genome sequence of Mycobacterium rufum JS14 T , a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii

doi: 10.1186/s40793-016-0167-5

Figure Lengend Snippet: A graphical circular map of the M. rufum JS14 T genome. The circular map was generated using the BLAST Ring Image Generator software . From the inner circle to the outer circle: Genetic regions; GC content (black), and GC skew (purple/green), respectively

Article Snippet: Mycobacterium rufum JS14 T (=ATCC BAA-1377 T , CIP 109273 T , JCM 16372 T , DSM 45406 T ), a type strain of the species Mycobacterium rufum sp. . belonging to the family Mycobacteriaceae , was isolated from polycyclic aromatic hydrocarbon (PAH)-contaminated soil in Hilo (HI, USA) because it harbors the capability of degrading PAH.

Techniques: Generated, Software