t borchii vittad  (ATCC)


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    ATCC t borchii vittad
    Physiochemical analysis of TbDHN1 and its homolog sequences. Amino acid compositions, percentages of low complexity regions, percentages of unstructured polypeptide and hydropathy profiles for TbDHN1 and its homologs. All figures are intended as percentages.
    T Borchii Vittad, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "A dehydration-inducible gene in the truffle Tuber borchii identifies a novel group of dehydrins"

    Article Title: A dehydration-inducible gene in the truffle Tuber borchii identifies a novel group of dehydrins

    Journal: BMC Genomics

    doi: 10.1186/1471-2164-7-39

    Physiochemical analysis of TbDHN1 and its homolog sequences. Amino acid compositions, percentages of low complexity regions, percentages of unstructured polypeptide and hydropathy profiles for TbDHN1 and its homologs. All figures are intended as percentages.
    Figure Legend Snippet: Physiochemical analysis of TbDHN1 and its homolog sequences. Amino acid compositions, percentages of low complexity regions, percentages of unstructured polypeptide and hydropathy profiles for TbDHN1 and its homologs. All figures are intended as percentages.

    Techniques Used:

    Panel A , Southern Blot analysis of TbDHN1 . T. borchii genomic DNA digested with HindIII (H, Lane 1 ), KpnI (K, Lane 2 ) and SmaI (S, Lane 3 ) was probed with an ECL-labelled TbDHN1 cDNA probe. Panel B , Gel-blot analysis of the TbDHN1 transcript under salinity and low temperature stress. Induction (left): mRNA extracted from mycelia grown for 30 days on control medium (CM; Lane 1 ); treated for 30 min in NaCl 0.4 M (NaCl 30 min; Lane 2 ); treated for 24 h in NaCl 0.4 M (NaCl 24 h; Lane 3 ); treated for 48 h at 4°C (cold shock 48 h; Lane 4 ). Repression (right): mRNA extracted from mycelia grown for 30 days on CM (CM; Lane 1 ), treated for 29 h in NaCl 0.4 M (NaCl 29 h; Lane 2 ); treated for 24 h in NaCl 0.4 M and then transferred on CM for 5 h (NaCl 24 h→ CM 5h; Lane 3 ). Signals obtained by 32 P -labeled TbDHN1 probe (top) were normalized using the rRNA 28 S probe as internal standard (bottom).
    Figure Legend Snippet: Panel A , Southern Blot analysis of TbDHN1 . T. borchii genomic DNA digested with HindIII (H, Lane 1 ), KpnI (K, Lane 2 ) and SmaI (S, Lane 3 ) was probed with an ECL-labelled TbDHN1 cDNA probe. Panel B , Gel-blot analysis of the TbDHN1 transcript under salinity and low temperature stress. Induction (left): mRNA extracted from mycelia grown for 30 days on control medium (CM; Lane 1 ); treated for 30 min in NaCl 0.4 M (NaCl 30 min; Lane 2 ); treated for 24 h in NaCl 0.4 M (NaCl 24 h; Lane 3 ); treated for 48 h at 4°C (cold shock 48 h; Lane 4 ). Repression (right): mRNA extracted from mycelia grown for 30 days on CM (CM; Lane 1 ), treated for 29 h in NaCl 0.4 M (NaCl 29 h; Lane 2 ); treated for 24 h in NaCl 0.4 M and then transferred on CM for 5 h (NaCl 24 h→ CM 5h; Lane 3 ). Signals obtained by 32 P -labeled TbDHN1 probe (top) were normalized using the rRNA 28 S probe as internal standard (bottom).

    Techniques Used: Southern Blot, Western Blot, Labeling

    t borchii vittad  (ATCC)


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    ATCC t borchii vittad
    Physiochemical analysis of TbDHN1 and its homolog sequences. Amino acid compositions, percentages of low complexity regions, percentages of unstructured polypeptide and hydropathy profiles for TbDHN1 and its homologs. All figures are intended as percentages.
    T Borchii Vittad, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "A dehydration-inducible gene in the truffle Tuber borchii identifies a novel group of dehydrins"

    Article Title: A dehydration-inducible gene in the truffle Tuber borchii identifies a novel group of dehydrins

    Journal: BMC Genomics

    doi: 10.1186/1471-2164-7-39

    Physiochemical analysis of TbDHN1 and its homolog sequences. Amino acid compositions, percentages of low complexity regions, percentages of unstructured polypeptide and hydropathy profiles for TbDHN1 and its homologs. All figures are intended as percentages.
    Figure Legend Snippet: Physiochemical analysis of TbDHN1 and its homolog sequences. Amino acid compositions, percentages of low complexity regions, percentages of unstructured polypeptide and hydropathy profiles for TbDHN1 and its homologs. All figures are intended as percentages.

    Techniques Used:

    Panel A , Southern Blot analysis of TbDHN1 . T. borchii genomic DNA digested with HindIII (H, Lane 1 ), KpnI (K, Lane 2 ) and SmaI (S, Lane 3 ) was probed with an ECL-labelled TbDHN1 cDNA probe. Panel B , Gel-blot analysis of the TbDHN1 transcript under salinity and low temperature stress. Induction (left): mRNA extracted from mycelia grown for 30 days on control medium (CM; Lane 1 ); treated for 30 min in NaCl 0.4 M (NaCl 30 min; Lane 2 ); treated for 24 h in NaCl 0.4 M (NaCl 24 h; Lane 3 ); treated for 48 h at 4°C (cold shock 48 h; Lane 4 ). Repression (right): mRNA extracted from mycelia grown for 30 days on CM (CM; Lane 1 ), treated for 29 h in NaCl 0.4 M (NaCl 29 h; Lane 2 ); treated for 24 h in NaCl 0.4 M and then transferred on CM for 5 h (NaCl 24 h→ CM 5h; Lane 3 ). Signals obtained by 32 P -labeled TbDHN1 probe (top) were normalized using the rRNA 28 S probe as internal standard (bottom).
    Figure Legend Snippet: Panel A , Southern Blot analysis of TbDHN1 . T. borchii genomic DNA digested with HindIII (H, Lane 1 ), KpnI (K, Lane 2 ) and SmaI (S, Lane 3 ) was probed with an ECL-labelled TbDHN1 cDNA probe. Panel B , Gel-blot analysis of the TbDHN1 transcript under salinity and low temperature stress. Induction (left): mRNA extracted from mycelia grown for 30 days on control medium (CM; Lane 1 ); treated for 30 min in NaCl 0.4 M (NaCl 30 min; Lane 2 ); treated for 24 h in NaCl 0.4 M (NaCl 24 h; Lane 3 ); treated for 48 h at 4°C (cold shock 48 h; Lane 4 ). Repression (right): mRNA extracted from mycelia grown for 30 days on CM (CM; Lane 1 ), treated for 29 h in NaCl 0.4 M (NaCl 29 h; Lane 2 ); treated for 24 h in NaCl 0.4 M and then transferred on CM for 5 h (NaCl 24 h→ CM 5h; Lane 3 ). Signals obtained by 32 P -labeled TbDHN1 probe (top) were normalized using the rRNA 28 S probe as internal standard (bottom).

    Techniques Used: Southern Blot, Western Blot, Labeling

    mycelia  (ATCC)


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    t borchii vittad  (ATCC)


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    ATCC t borchii vittad
    ATM-transformation with the pABr1 vector. a) pABr1 (11.4 kb) vector map: Hygromycin (R), hygromycin phosphotransferase gene ( hph ); Kanamicin resistance gene ( kanR ); ToxA promoter, promoter sequence from P. tritici-repentis; SGFP, the S65T variant of the green fluorescent protein (GFP); CAMV35S cauliflower mosaic virus promoter; mGFP5 , folding-enhanced green fluorescent protein variant; NOS polyA , Nopaline synthase terminator sequence; T-border (R) and T-border (L) , right (RB) and left (LB) borders of A. tumefaciens T-DNA. The blue highlighted box is the plasmid region derived from pCT74. b) Images (100x magnification) of T. <t>borchii</t> hyphae transformed with either the pABr1 or the pBGgHg vector, plus an untransformed control ( mock ), obtained by phase-contrast ( Nomarski ) and GFP fluorescence microscopy ( GFP ). The type of treatment, vector and co-cultivation times are indicated on the left; a merge of the Nomarski and GFP images is shown in the rightmost panels. c) Quantification of transformed hyphae obtained with pBGgHg or pABr-1, expressed as percentage with respect to the total number of hyphae (~4500) present in each analyzed section. Data are the mean ± s.e.m. of at least five independent experiments. d) PCR amplification with ToxA -specific primers of total DNA extracted from mock-infected mycelia ( lane 1 ), pABr1-transformed mycelia ( lane 2 ), and pABr1/AGL-1 bacterial cells ( lane 3 ) is shown in the upper panel . The results of PCR amplification of the same samples with kanR -specific primers are shown in the lower panel .
    T Borchii Vittad, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Integrative gene transfer in the truffle Tuber borchii by Agrobacterium tumefaciens -mediated transformation"

    Article Title: Integrative gene transfer in the truffle Tuber borchii by Agrobacterium tumefaciens -mediated transformation

    Journal: AMB Express

    doi: 10.1186/s13568-014-0043-x

    ATM-transformation with the pABr1 vector. a) pABr1 (11.4 kb) vector map: Hygromycin (R), hygromycin phosphotransferase gene ( hph ); Kanamicin resistance gene ( kanR ); ToxA promoter, promoter sequence from P. tritici-repentis; SGFP, the S65T variant of the green fluorescent protein (GFP); CAMV35S cauliflower mosaic virus promoter; mGFP5 , folding-enhanced green fluorescent protein variant; NOS polyA , Nopaline synthase terminator sequence; T-border (R) and T-border (L) , right (RB) and left (LB) borders of A. tumefaciens T-DNA. The blue highlighted box is the plasmid region derived from pCT74. b) Images (100x magnification) of T. borchii hyphae transformed with either the pABr1 or the pBGgHg vector, plus an untransformed control ( mock ), obtained by phase-contrast ( Nomarski ) and GFP fluorescence microscopy ( GFP ). The type of treatment, vector and co-cultivation times are indicated on the left; a merge of the Nomarski and GFP images is shown in the rightmost panels. c) Quantification of transformed hyphae obtained with pBGgHg or pABr-1, expressed as percentage with respect to the total number of hyphae (~4500) present in each analyzed section. Data are the mean ± s.e.m. of at least five independent experiments. d) PCR amplification with ToxA -specific primers of total DNA extracted from mock-infected mycelia ( lane 1 ), pABr1-transformed mycelia ( lane 2 ), and pABr1/AGL-1 bacterial cells ( lane 3 ) is shown in the upper panel . The results of PCR amplification of the same samples with kanR -specific primers are shown in the lower panel .
    Figure Legend Snippet: ATM-transformation with the pABr1 vector. a) pABr1 (11.4 kb) vector map: Hygromycin (R), hygromycin phosphotransferase gene ( hph ); Kanamicin resistance gene ( kanR ); ToxA promoter, promoter sequence from P. tritici-repentis; SGFP, the S65T variant of the green fluorescent protein (GFP); CAMV35S cauliflower mosaic virus promoter; mGFP5 , folding-enhanced green fluorescent protein variant; NOS polyA , Nopaline synthase terminator sequence; T-border (R) and T-border (L) , right (RB) and left (LB) borders of A. tumefaciens T-DNA. The blue highlighted box is the plasmid region derived from pCT74. b) Images (100x magnification) of T. borchii hyphae transformed with either the pABr1 or the pBGgHg vector, plus an untransformed control ( mock ), obtained by phase-contrast ( Nomarski ) and GFP fluorescence microscopy ( GFP ). The type of treatment, vector and co-cultivation times are indicated on the left; a merge of the Nomarski and GFP images is shown in the rightmost panels. c) Quantification of transformed hyphae obtained with pBGgHg or pABr-1, expressed as percentage with respect to the total number of hyphae (~4500) present in each analyzed section. Data are the mean ± s.e.m. of at least five independent experiments. d) PCR amplification with ToxA -specific primers of total DNA extracted from mock-infected mycelia ( lane 1 ), pABr1-transformed mycelia ( lane 2 ), and pABr1/AGL-1 bacterial cells ( lane 3 ) is shown in the upper panel . The results of PCR amplification of the same samples with kanR -specific primers are shown in the lower panel .

    Techniques Used: Transformation Assay, Plasmid Preparation, Sequencing, Variant Assay, Derivative Assay, Fluorescence, Microscopy, Amplification, Infection

    Following the fate of the T-DNA in pABr1-transformed hyphae. a) Sections (3 x 3 mm) of transformed T. borchii mycelia analyzed by confocal microscopy (GFP wavelength) at the indicated times after Agrobacterium infection. b) Histogram representation of cumulative data produced by the experiments in panel a) expressed as percentage of fluorescent hyphae with respect to the total number of hyphae present in each section (~4500). Data are the mean ± s.e.m. of at least five independent experiments. c) PCR amplification with sgfp specific-primers of genomic DNA obtained from mock-transformed mycelia ( WT ) using 0.1 μg ( lane 3 ) and 1 μg ( lane 4 ) of template DNA, and from AGL-1/pABr1-transformed mycelia (0.1 μg of template DNA; lane5 ). A PCR negative control ( no DNA ) and size markers ( λ/HIII ) are shown in the two leftmost lanes. d) Schematic representation of the probes (P1 and P2) utilized for DNA blot analysis. e) DNA blot analysis of DNA extracted from AGL-1/pABr1-transformed mycelia (“ transformant ”, lane 1 ), mock-transformed mycelia ( WT , lane 2), and AGL-1/ABr-1 bacterial cells ( pABr1 , lane 3), hybridized with the P1 probe, which detects T-DNA integration regions. After stripping, the same membrane was hybridized with the P2 control probe.
    Figure Legend Snippet: Following the fate of the T-DNA in pABr1-transformed hyphae. a) Sections (3 x 3 mm) of transformed T. borchii mycelia analyzed by confocal microscopy (GFP wavelength) at the indicated times after Agrobacterium infection. b) Histogram representation of cumulative data produced by the experiments in panel a) expressed as percentage of fluorescent hyphae with respect to the total number of hyphae present in each section (~4500). Data are the mean ± s.e.m. of at least five independent experiments. c) PCR amplification with sgfp specific-primers of genomic DNA obtained from mock-transformed mycelia ( WT ) using 0.1 μg ( lane 3 ) and 1 μg ( lane 4 ) of template DNA, and from AGL-1/pABr1-transformed mycelia (0.1 μg of template DNA; lane5 ). A PCR negative control ( no DNA ) and size markers ( λ/HIII ) are shown in the two leftmost lanes. d) Schematic representation of the probes (P1 and P2) utilized for DNA blot analysis. e) DNA blot analysis of DNA extracted from AGL-1/pABr1-transformed mycelia (“ transformant ”, lane 1 ), mock-transformed mycelia ( WT , lane 2), and AGL-1/ABr-1 bacterial cells ( pABr1 , lane 3), hybridized with the P1 probe, which detects T-DNA integration regions. After stripping, the same membrane was hybridized with the P2 control probe.

    Techniques Used: Transformation Assay, Confocal Microscopy, Infection, Produced, Amplification, Negative Control, Stripping Membranes

    t borchii mycelia mycelia  (ATCC)


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    t borchii mycelia mycelia  (ATCC)


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    t borchii mycelia mycelia  (ATCC)


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    mycelia  (ATCC)


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    immunoblot analysis t borchii vittad  (ATCC)


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    Physiochemical analysis of TbDHN1 and its homolog sequences. Amino acid compositions, percentages of low complexity regions, percentages of unstructured polypeptide and hydropathy profiles for TbDHN1 and its homologs. All figures are intended as percentages.
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    Physiochemical analysis of TbDHN1 and its homolog sequences. Amino acid compositions, percentages of low complexity regions, percentages of unstructured polypeptide and hydropathy profiles for TbDHN1 and its homologs. All figures are intended as percentages.
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    Physiochemical analysis of TbDHN1 and its homolog sequences. Amino acid compositions, percentages of low complexity regions, percentages of unstructured polypeptide and hydropathy profiles for TbDHN1 and its homologs. All figures are intended as percentages.
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    Physiochemical analysis of TbDHN1 and its homolog sequences. Amino acid compositions, percentages of low complexity regions, percentages of unstructured polypeptide and hydropathy profiles for TbDHN1 and its homologs. All figures are intended as percentages.
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    Physiochemical analysis of TbDHN1 and its homolog sequences. Amino acid compositions, percentages of low complexity regions, percentages of unstructured polypeptide and hydropathy profiles for TbDHN1 and its homologs. All figures are intended as percentages.

    Journal: BMC Genomics

    Article Title: A dehydration-inducible gene in the truffle Tuber borchii identifies a novel group of dehydrins

    doi: 10.1186/1471-2164-7-39

    Figure Lengend Snippet: Physiochemical analysis of TbDHN1 and its homolog sequences. Amino acid compositions, percentages of low complexity regions, percentages of unstructured polypeptide and hydropathy profiles for TbDHN1 and its homologs. All figures are intended as percentages.

    Article Snippet: T. borchii Vittad. mycelia (isolate ATCC 95640) were grown in the dark at 24°C on a synthetic solid medium (control medium, CM) containing CaCl 2 · 2H 2 O (66 mg/L), NaCl (25 mg/L), KH 2 PO 4 (500 mg/L), (NH 4 ) 2 HPO 4 (250 mg/L), MgSO 4 · 7H 2 O (150 mg/L), FeNa-EDTA (20 mg/L), and thiamine hydrochloride (1 mg/L), plus agar (15 g/L) and glucose (5 g/L).

    Techniques:

    Panel A , Southern Blot analysis of TbDHN1 . T. borchii genomic DNA digested with HindIII (H, Lane 1 ), KpnI (K, Lane 2 ) and SmaI (S, Lane 3 ) was probed with an ECL-labelled TbDHN1 cDNA probe. Panel B , Gel-blot analysis of the TbDHN1 transcript under salinity and low temperature stress. Induction (left): mRNA extracted from mycelia grown for 30 days on control medium (CM; Lane 1 ); treated for 30 min in NaCl 0.4 M (NaCl 30 min; Lane 2 ); treated for 24 h in NaCl 0.4 M (NaCl 24 h; Lane 3 ); treated for 48 h at 4°C (cold shock 48 h; Lane 4 ). Repression (right): mRNA extracted from mycelia grown for 30 days on CM (CM; Lane 1 ), treated for 29 h in NaCl 0.4 M (NaCl 29 h; Lane 2 ); treated for 24 h in NaCl 0.4 M and then transferred on CM for 5 h (NaCl 24 h→ CM 5h; Lane 3 ). Signals obtained by 32 P -labeled TbDHN1 probe (top) were normalized using the rRNA 28 S probe as internal standard (bottom).

    Journal: BMC Genomics

    Article Title: A dehydration-inducible gene in the truffle Tuber borchii identifies a novel group of dehydrins

    doi: 10.1186/1471-2164-7-39

    Figure Lengend Snippet: Panel A , Southern Blot analysis of TbDHN1 . T. borchii genomic DNA digested with HindIII (H, Lane 1 ), KpnI (K, Lane 2 ) and SmaI (S, Lane 3 ) was probed with an ECL-labelled TbDHN1 cDNA probe. Panel B , Gel-blot analysis of the TbDHN1 transcript under salinity and low temperature stress. Induction (left): mRNA extracted from mycelia grown for 30 days on control medium (CM; Lane 1 ); treated for 30 min in NaCl 0.4 M (NaCl 30 min; Lane 2 ); treated for 24 h in NaCl 0.4 M (NaCl 24 h; Lane 3 ); treated for 48 h at 4°C (cold shock 48 h; Lane 4 ). Repression (right): mRNA extracted from mycelia grown for 30 days on CM (CM; Lane 1 ), treated for 29 h in NaCl 0.4 M (NaCl 29 h; Lane 2 ); treated for 24 h in NaCl 0.4 M and then transferred on CM for 5 h (NaCl 24 h→ CM 5h; Lane 3 ). Signals obtained by 32 P -labeled TbDHN1 probe (top) were normalized using the rRNA 28 S probe as internal standard (bottom).

    Article Snippet: T. borchii Vittad. mycelia (isolate ATCC 95640) were grown in the dark at 24°C on a synthetic solid medium (control medium, CM) containing CaCl 2 · 2H 2 O (66 mg/L), NaCl (25 mg/L), KH 2 PO 4 (500 mg/L), (NH 4 ) 2 HPO 4 (250 mg/L), MgSO 4 · 7H 2 O (150 mg/L), FeNa-EDTA (20 mg/L), and thiamine hydrochloride (1 mg/L), plus agar (15 g/L) and glucose (5 g/L).

    Techniques: Southern Blot, Western Blot, Labeling