Structured Review

Illumina Inc 75 bp single end sequencing
75 Bp Single End Sequencing, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 11 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/75 bp single end sequencing/product/Illumina Inc
Average 99 stars, based on 11 article reviews
Price from $9.99 to $1999.99
75 bp single end sequencing - by Bioz Stars, 2020-05
99/100 stars

Images

Related Articles

Sequencing:

Article Title: A Functional Link between Nuclear RNA Decay and Transcriptional Control Mediated by the Polycomb Repressive Complex 2
Article Snippet: .. Libraries were sequencing on an Illumina NextSeq 550 (75 bp, single end). .. Processing and analysis of RNA-seq data Quality control of sequence reads was done using FastQC v0.11.2 ( http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ ).

Article Title: Potential of Pectins to Beneficially Modulate the Gut Microbiota Depends on Their Structural Properties
Article Snippet: .. Tag-encoded 16S rRNA gene sequencing was performed using Illumina NextSeq 550 Sequencing System using the 2 × 150 cycles MID V2 kit (Illumina, CA, United States). ..

Chromatin Immunoprecipitation:

Article Title: Mapping actionable pathways and mutations in brain tumours using targeted RNA next generation sequencing
Article Snippet: .. Final libraries were quantified on a High Sensitivity Bioanalyzer chip (Agilent, Santa Clara, CA) and sequenced at 1.4pM with 10% PhiX on the Illumina NextSeq 550 Sequencer (Illumina, San Diego, CA). ..

Expressing:

Article Title: Multi-omic Pathway and Network Analysis to Identify Biomarkers for Hepatocellular Carcinoma
Article Snippet: .. The 65 RNA samples described above were analyzed by Illumina NextSeq 550 platform using 2×150 bp paired-end (PE150) for miRNA-seq expression profiling. .. The miRNA-seq data acquired were analyzed using the QIAseq miRNA quantification data analysis software.

ChIP-sequencing:

Article Title: Dynamic control of enhancer activity drives stage-specific gene expression during flower morphogenesis
Article Snippet: .. All RNA- and ChIP-seq libraries were sequenced using the NextSeq® 550 sequencer (Illumina, USA). .. RNA-seq data analysis RNA-seq reads were mapped to Arabidopsis thaliana reference genome (TAIR10) using STAR (version 020201).

Mouse Assay:

Article Title: TRANSCRIPTOME ALTERATIONS ASSOCIATED WITH AGE-RELATED DECLINE IN PHYSICAL FUNCTION.
Article Snippet: .. We extracted RNA from the tibialis anterior muscles, ran RNAseq to examine the transcriptome using an Illumina NextSeq 550, comparing adults (n=7) to older (n=7) and elderly mice (n=9). .. Age resulted in gene expression differences of 1.5 log2 fold change or greater (p < 0.01) in 46 genes in the older mice and in 252 genes in the elderly (both compared to adults).

Similar Products

  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
  • 88
    Illumina Inc 100 bp multiplexed sequencing
    ALV integrations mapped with respect to transcription start sites. (A) Integrations within 10 kb of transcription start sites are shown placed into <t>100-bp</t> bins. The red line represents ALV-A integrations, and the black line represents randomly simulated integrations. A preference for integration flanking TSSs is observed. (B) Integrations within 1 kb of TSSs are shown in 10-bp bins. A striking lack of integrations was observed in the immediate vicinity of TSSs. (C) Integration frequency was calculated for expanded clones (red), nonexpanded clones (blue), and randomly generated integrations (black), and integrations are presented in 500-bp bins. Integration frequency is the fraction of total integrations that fall into each 500-bp bin. Integrations near the TSS are shown to be slightly more likely to result in clonal expansion.
    100 Bp Multiplexed Sequencing, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 88/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/100 bp multiplexed sequencing/product/Illumina Inc
    Average 88 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    100 bp multiplexed sequencing - by Bioz Stars, 2020-05
    88/100 stars
      Buy from Supplier

    92
    Illumina Inc illumina nextseq
    ALV integrations mapped with respect to transcription start sites. (A) Integrations within 10 kb of transcription start sites are shown placed into <t>100-bp</t> bins. The red line represents ALV-A integrations, and the black line represents randomly simulated integrations. A preference for integration flanking TSSs is observed. (B) Integrations within 1 kb of TSSs are shown in 10-bp bins. A striking lack of integrations was observed in the immediate vicinity of TSSs. (C) Integration frequency was calculated for expanded clones (red), nonexpanded clones (blue), and randomly generated integrations (black), and integrations are presented in 500-bp bins. Integration frequency is the fraction of total integrations that fall into each 500-bp bin. Integrations near the TSS are shown to be slightly more likely to result in clonal expansion.
    Illumina Nextseq, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 92/100, based on 549 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/illumina nextseq/product/Illumina Inc
    Average 92 stars, based on 549 article reviews
    Price from $9.99 to $1999.99
    illumina nextseq - by Bioz Stars, 2020-05
    92/100 stars
      Buy from Supplier

    94
    Illumina Inc genome analyzer iix
    ALV integrations mapped with respect to transcription start sites. (A) Integrations within 10 kb of transcription start sites are shown placed into <t>100-bp</t> bins. The red line represents ALV-A integrations, and the black line represents randomly simulated integrations. A preference for integration flanking TSSs is observed. (B) Integrations within 1 kb of TSSs are shown in 10-bp bins. A striking lack of integrations was observed in the immediate vicinity of TSSs. (C) Integration frequency was calculated for expanded clones (red), nonexpanded clones (blue), and randomly generated integrations (black), and integrations are presented in 500-bp bins. Integration frequency is the fraction of total integrations that fall into each 500-bp bin. Integrations near the TSS are shown to be slightly more likely to result in clonal expansion.
    Genome Analyzer Iix, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 94/100, based on 68 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/genome analyzer iix/product/Illumina Inc
    Average 94 stars, based on 68 article reviews
    Price from $9.99 to $1999.99
    genome analyzer iix - by Bioz Stars, 2020-05
    94/100 stars
      Buy from Supplier

    91
    Illumina Inc 75 bp single end
    ALV integrations mapped with respect to transcription start sites. (A) Integrations within 10 kb of transcription start sites are shown placed into <t>100-bp</t> bins. The red line represents ALV-A integrations, and the black line represents randomly simulated integrations. A preference for integration flanking TSSs is observed. (B) Integrations within 1 kb of TSSs are shown in 10-bp bins. A striking lack of integrations was observed in the immediate vicinity of TSSs. (C) Integration frequency was calculated for expanded clones (red), nonexpanded clones (blue), and randomly generated integrations (black), and integrations are presented in 500-bp bins. Integration frequency is the fraction of total integrations that fall into each 500-bp bin. Integrations near the TSS are shown to be slightly more likely to result in clonal expansion.
    75 Bp Single End, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 91/100, based on 9 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/75 bp single end/product/Illumina Inc
    Average 91 stars, based on 9 article reviews
    Price from $9.99 to $1999.99
    75 bp single end - by Bioz Stars, 2020-05
    91/100 stars
      Buy from Supplier

    Image Search Results


    ALV integrations mapped with respect to transcription start sites. (A) Integrations within 10 kb of transcription start sites are shown placed into 100-bp bins. The red line represents ALV-A integrations, and the black line represents randomly simulated integrations. A preference for integration flanking TSSs is observed. (B) Integrations within 1 kb of TSSs are shown in 10-bp bins. A striking lack of integrations was observed in the immediate vicinity of TSSs. (C) Integration frequency was calculated for expanded clones (red), nonexpanded clones (blue), and randomly generated integrations (black), and integrations are presented in 500-bp bins. Integration frequency is the fraction of total integrations that fall into each 500-bp bin. Integrations near the TSS are shown to be slightly more likely to result in clonal expansion.

    Journal: mBio

    Article Title: Common Viral Integration Sites Identified in Avian Leukosis Virus-Induced B-Cell Lymphomas

    doi: 10.1128/mBio.01863-15

    Figure Lengend Snippet: ALV integrations mapped with respect to transcription start sites. (A) Integrations within 10 kb of transcription start sites are shown placed into 100-bp bins. The red line represents ALV-A integrations, and the black line represents randomly simulated integrations. A preference for integration flanking TSSs is observed. (B) Integrations within 1 kb of TSSs are shown in 10-bp bins. A striking lack of integrations was observed in the immediate vicinity of TSSs. (C) Integration frequency was calculated for expanded clones (red), nonexpanded clones (blue), and randomly generated integrations (black), and integrations are presented in 500-bp bins. Integration frequency is the fraction of total integrations that fall into each 500-bp bin. Integrations near the TSS are shown to be slightly more likely to result in clonal expansion.

    Article Snippet: Libraries were quantified by quantitative PCR (qPCR) and then underwent single-end 75- or 100-bp multiplexed sequencing on the Illumina Hi-Seq 2000.

    Techniques: Generated

    Preference for integration near genomic features. Enrichment for integration near genomic features was calculated with HOMER ( 40 ). Fold enrichment was calculated by comparing ALV integrations to a randomly generated integration data set. Promoters are defined as the region from −1 kb to +100 bp from transcription start sites, while transcription termination sites (TTS) are defined as the region from −100 bp to +1 kb flanking the transcription termination site.

    Journal: mBio

    Article Title: Common Viral Integration Sites Identified in Avian Leukosis Virus-Induced B-Cell Lymphomas

    doi: 10.1128/mBio.01863-15

    Figure Lengend Snippet: Preference for integration near genomic features. Enrichment for integration near genomic features was calculated with HOMER ( 40 ). Fold enrichment was calculated by comparing ALV integrations to a randomly generated integration data set. Promoters are defined as the region from −1 kb to +100 bp from transcription start sites, while transcription termination sites (TTS) are defined as the region from −100 bp to +1 kb flanking the transcription termination site.

    Article Snippet: Libraries were quantified by quantitative PCR (qPCR) and then underwent single-end 75- or 100-bp multiplexed sequencing on the Illumina Hi-Seq 2000.

    Techniques: Generated