exophiala dermatitidis  (ATCC)


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    Structured Review

    ATCC exophiala dermatitidis
    Phylogeny, PKS domains, and the gene cluster. (A) KS domains of fungal PKSs used for the analysis were extracted, and a phylogram was generated as described in Materials and Methods. For characterized PKSs, the leaves of the phylogram are labeled with the organism, protein name, and GenBank accession number (EMBL database). For uncharacterized Fusarium PKSs, the Broad Institute identification is given for F. graminearum (FGSG), F. oxysporum (FOXG), and F. verticillioides (FVEG), and the Joint Genome Institute identification is given for F. solani. The domain architecture of each PKS and the chemical product produced are given on the right. Branches with branch support values of <0.5 were collapsed. The KS domain of the highly reducing PKS Fum1 was used as an outgroup. The bar represents 0.3 character change. Organisms: Af, Aspergillus fumigatus; An, A. nidulans; Ap, A. parasiticus; As, Acremonium strictum; At, Aspergillus terreus; Cl, Colletotrichum lagenarium; Cn, Cercospora nicotianae; Ds, Dothistroma septosporum; Ed, <t>Exophiala</t> <t>dermatitidis;</t> Fg, F. graminearum; Ff, F. fujikuroi; Fs, F. solani; Fv, F. verticillioides; Gl, Glarea lozoyensis; Mp, Monascus purpureus; Nsp., Nodulisporium sp. strain ATCC 74245. Domains: SAT, starter unit ACP transacylase domain (superscript letters indicate an amino acid other than C at the third position of the active site); KS, β-ketoacyl synthase domain; MAT, malonyl-CoA:ACP transacylase domain; PT, product template domain; ACP, acyl carrier protein domain; TE, thioesterase domain; TE/CLC, thioesterase/Claisen cyclase domain; R, reductase domain; DH, dehydratase domain; ER, enoyl reductase domain; KR, keto reductase domain; CMet, C-methyltransferase domain. (B) The components of the fsr gene cluster, fsr1 to fsr6, are depicted as filled rectangles. The first genes upstream (FF_03983) and downstream (FF_03990) are shaded. Arrows indicate the direction of translation, and open bars represent introns within the gene.
    Exophiala Dermatitidis, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Biosynthesis of Fusarubins Accounts for Pigmentation of Fusarium fujikuroi Perithecia"

    Article Title: Biosynthesis of Fusarubins Accounts for Pigmentation of Fusarium fujikuroi Perithecia

    Journal: Applied and Environmental Microbiology

    doi: 10.1128/AEM.00823-12

    Phylogeny, PKS domains, and the gene cluster. (A) KS domains of fungal PKSs used for the analysis were extracted, and a phylogram was generated as described in Materials and Methods. For characterized PKSs, the leaves of the phylogram are labeled with the organism, protein name, and GenBank accession number (EMBL database). For uncharacterized Fusarium PKSs, the Broad Institute identification is given for F. graminearum (FGSG), F. oxysporum (FOXG), and F. verticillioides (FVEG), and the Joint Genome Institute identification is given for F. solani. The domain architecture of each PKS and the chemical product produced are given on the right. Branches with branch support values of <0.5 were collapsed. The KS domain of the highly reducing PKS Fum1 was used as an outgroup. The bar represents 0.3 character change. Organisms: Af, Aspergillus fumigatus; An, A. nidulans; Ap, A. parasiticus; As, Acremonium strictum; At, Aspergillus terreus; Cl, Colletotrichum lagenarium; Cn, Cercospora nicotianae; Ds, Dothistroma septosporum; Ed, Exophiala dermatitidis; Fg, F. graminearum; Ff, F. fujikuroi; Fs, F. solani; Fv, F. verticillioides; Gl, Glarea lozoyensis; Mp, Monascus purpureus; Nsp., Nodulisporium sp. strain ATCC 74245. Domains: SAT, starter unit ACP transacylase domain (superscript letters indicate an amino acid other than C at the third position of the active site); KS, β-ketoacyl synthase domain; MAT, malonyl-CoA:ACP transacylase domain; PT, product template domain; ACP, acyl carrier protein domain; TE, thioesterase domain; TE/CLC, thioesterase/Claisen cyclase domain; R, reductase domain; DH, dehydratase domain; ER, enoyl reductase domain; KR, keto reductase domain; CMet, C-methyltransferase domain. (B) The components of the fsr gene cluster, fsr1 to fsr6, are depicted as filled rectangles. The first genes upstream (FF_03983) and downstream (FF_03990) are shaded. Arrows indicate the direction of translation, and open bars represent introns within the gene.
    Figure Legend Snippet: Phylogeny, PKS domains, and the gene cluster. (A) KS domains of fungal PKSs used for the analysis were extracted, and a phylogram was generated as described in Materials and Methods. For characterized PKSs, the leaves of the phylogram are labeled with the organism, protein name, and GenBank accession number (EMBL database). For uncharacterized Fusarium PKSs, the Broad Institute identification is given for F. graminearum (FGSG), F. oxysporum (FOXG), and F. verticillioides (FVEG), and the Joint Genome Institute identification is given for F. solani. The domain architecture of each PKS and the chemical product produced are given on the right. Branches with branch support values of <0.5 were collapsed. The KS domain of the highly reducing PKS Fum1 was used as an outgroup. The bar represents 0.3 character change. Organisms: Af, Aspergillus fumigatus; An, A. nidulans; Ap, A. parasiticus; As, Acremonium strictum; At, Aspergillus terreus; Cl, Colletotrichum lagenarium; Cn, Cercospora nicotianae; Ds, Dothistroma septosporum; Ed, Exophiala dermatitidis; Fg, F. graminearum; Ff, F. fujikuroi; Fs, F. solani; Fv, F. verticillioides; Gl, Glarea lozoyensis; Mp, Monascus purpureus; Nsp., Nodulisporium sp. strain ATCC 74245. Domains: SAT, starter unit ACP transacylase domain (superscript letters indicate an amino acid other than C at the third position of the active site); KS, β-ketoacyl synthase domain; MAT, malonyl-CoA:ACP transacylase domain; PT, product template domain; ACP, acyl carrier protein domain; TE, thioesterase domain; TE/CLC, thioesterase/Claisen cyclase domain; R, reductase domain; DH, dehydratase domain; ER, enoyl reductase domain; KR, keto reductase domain; CMet, C-methyltransferase domain. (B) The components of the fsr gene cluster, fsr1 to fsr6, are depicted as filled rectangles. The first genes upstream (FF_03983) and downstream (FF_03990) are shaded. Arrows indicate the direction of translation, and open bars represent introns within the gene.

    Techniques Used: Generated, Labeling, Produced

    exophiala dermatitidis  (ATCC)


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    Structured Review

    ATCC exophiala dermatitidis
    Phylogeny, PKS domains, and the gene cluster. (A) KS domains of fungal PKSs used for the analysis were extracted, and a phylogram was generated as described in Materials and Methods. For characterized PKSs, the leaves of the phylogram are labeled with the organism, protein name, and GenBank accession number (EMBL database). For uncharacterized Fusarium PKSs, the Broad Institute identification is given for F. graminearum (FGSG), F. oxysporum (FOXG), and F. verticillioides (FVEG), and the Joint Genome Institute identification is given for F. solani. The domain architecture of each PKS and the chemical product produced are given on the right. Branches with branch support values of <0.5 were collapsed. The KS domain of the highly reducing PKS Fum1 was used as an outgroup. The bar represents 0.3 character change. Organisms: Af, Aspergillus fumigatus; An, A. nidulans; Ap, A. parasiticus; As, Acremonium strictum; At, Aspergillus terreus; Cl, Colletotrichum lagenarium; Cn, Cercospora nicotianae; Ds, Dothistroma septosporum; Ed, <t>Exophiala</t> <t>dermatitidis;</t> Fg, F. graminearum; Ff, F. fujikuroi; Fs, F. solani; Fv, F. verticillioides; Gl, Glarea lozoyensis; Mp, Monascus purpureus; Nsp., Nodulisporium sp. strain ATCC 74245. Domains: SAT, starter unit ACP transacylase domain (superscript letters indicate an amino acid other than C at the third position of the active site); KS, β-ketoacyl synthase domain; MAT, malonyl-CoA:ACP transacylase domain; PT, product template domain; ACP, acyl carrier protein domain; TE, thioesterase domain; TE/CLC, thioesterase/Claisen cyclase domain; R, reductase domain; DH, dehydratase domain; ER, enoyl reductase domain; KR, keto reductase domain; CMet, C-methyltransferase domain. (B) The components of the fsr gene cluster, fsr1 to fsr6, are depicted as filled rectangles. The first genes upstream (FF_03983) and downstream (FF_03990) are shaded. Arrows indicate the direction of translation, and open bars represent introns within the gene.
    Exophiala Dermatitidis, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/exophiala dermatitidis/product/ATCC
    Average 86 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    exophiala dermatitidis - by Bioz Stars, 2024-03
    86/100 stars

    Images

    1) Product Images from "Biosynthesis of Fusarubins Accounts for Pigmentation of Fusarium fujikuroi Perithecia"

    Article Title: Biosynthesis of Fusarubins Accounts for Pigmentation of Fusarium fujikuroi Perithecia

    Journal: Applied and Environmental Microbiology

    doi: 10.1128/AEM.00823-12

    Phylogeny, PKS domains, and the gene cluster. (A) KS domains of fungal PKSs used for the analysis were extracted, and a phylogram was generated as described in Materials and Methods. For characterized PKSs, the leaves of the phylogram are labeled with the organism, protein name, and GenBank accession number (EMBL database). For uncharacterized Fusarium PKSs, the Broad Institute identification is given for F. graminearum (FGSG), F. oxysporum (FOXG), and F. verticillioides (FVEG), and the Joint Genome Institute identification is given for F. solani. The domain architecture of each PKS and the chemical product produced are given on the right. Branches with branch support values of <0.5 were collapsed. The KS domain of the highly reducing PKS Fum1 was used as an outgroup. The bar represents 0.3 character change. Organisms: Af, Aspergillus fumigatus; An, A. nidulans; Ap, A. parasiticus; As, Acremonium strictum; At, Aspergillus terreus; Cl, Colletotrichum lagenarium; Cn, Cercospora nicotianae; Ds, Dothistroma septosporum; Ed, Exophiala dermatitidis; Fg, F. graminearum; Ff, F. fujikuroi; Fs, F. solani; Fv, F. verticillioides; Gl, Glarea lozoyensis; Mp, Monascus purpureus; Nsp., Nodulisporium sp. strain ATCC 74245. Domains: SAT, starter unit ACP transacylase domain (superscript letters indicate an amino acid other than C at the third position of the active site); KS, β-ketoacyl synthase domain; MAT, malonyl-CoA:ACP transacylase domain; PT, product template domain; ACP, acyl carrier protein domain; TE, thioesterase domain; TE/CLC, thioesterase/Claisen cyclase domain; R, reductase domain; DH, dehydratase domain; ER, enoyl reductase domain; KR, keto reductase domain; CMet, C-methyltransferase domain. (B) The components of the fsr gene cluster, fsr1 to fsr6, are depicted as filled rectangles. The first genes upstream (FF_03983) and downstream (FF_03990) are shaded. Arrows indicate the direction of translation, and open bars represent introns within the gene.
    Figure Legend Snippet: Phylogeny, PKS domains, and the gene cluster. (A) KS domains of fungal PKSs used for the analysis were extracted, and a phylogram was generated as described in Materials and Methods. For characterized PKSs, the leaves of the phylogram are labeled with the organism, protein name, and GenBank accession number (EMBL database). For uncharacterized Fusarium PKSs, the Broad Institute identification is given for F. graminearum (FGSG), F. oxysporum (FOXG), and F. verticillioides (FVEG), and the Joint Genome Institute identification is given for F. solani. The domain architecture of each PKS and the chemical product produced are given on the right. Branches with branch support values of <0.5 were collapsed. The KS domain of the highly reducing PKS Fum1 was used as an outgroup. The bar represents 0.3 character change. Organisms: Af, Aspergillus fumigatus; An, A. nidulans; Ap, A. parasiticus; As, Acremonium strictum; At, Aspergillus terreus; Cl, Colletotrichum lagenarium; Cn, Cercospora nicotianae; Ds, Dothistroma septosporum; Ed, Exophiala dermatitidis; Fg, F. graminearum; Ff, F. fujikuroi; Fs, F. solani; Fv, F. verticillioides; Gl, Glarea lozoyensis; Mp, Monascus purpureus; Nsp., Nodulisporium sp. strain ATCC 74245. Domains: SAT, starter unit ACP transacylase domain (superscript letters indicate an amino acid other than C at the third position of the active site); KS, β-ketoacyl synthase domain; MAT, malonyl-CoA:ACP transacylase domain; PT, product template domain; ACP, acyl carrier protein domain; TE, thioesterase domain; TE/CLC, thioesterase/Claisen cyclase domain; R, reductase domain; DH, dehydratase domain; ER, enoyl reductase domain; KR, keto reductase domain; CMet, C-methyltransferase domain. (B) The components of the fsr gene cluster, fsr1 to fsr6, are depicted as filled rectangles. The first genes upstream (FF_03983) and downstream (FF_03990) are shaded. Arrows indicate the direction of translation, and open bars represent introns within the gene.

    Techniques Used: Generated, Labeling, Produced

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    ATCC exophiala dermatitidis
    Phylogeny, PKS domains, and the gene cluster. (A) KS domains of fungal PKSs used for the analysis were extracted, and a phylogram was generated as described in Materials and Methods. For characterized PKSs, the leaves of the phylogram are labeled with the organism, protein name, and GenBank accession number (EMBL database). For uncharacterized Fusarium PKSs, the Broad Institute identification is given for F. graminearum (FGSG), F. oxysporum (FOXG), and F. verticillioides (FVEG), and the Joint Genome Institute identification is given for F. solani. The domain architecture of each PKS and the chemical product produced are given on the right. Branches with branch support values of <0.5 were collapsed. The KS domain of the highly reducing PKS Fum1 was used as an outgroup. The bar represents 0.3 character change. Organisms: Af, Aspergillus fumigatus; An, A. nidulans; Ap, A. parasiticus; As, Acremonium strictum; At, Aspergillus terreus; Cl, Colletotrichum lagenarium; Cn, Cercospora nicotianae; Ds, Dothistroma septosporum; Ed, <t>Exophiala</t> <t>dermatitidis;</t> Fg, F. graminearum; Ff, F. fujikuroi; Fs, F. solani; Fv, F. verticillioides; Gl, Glarea lozoyensis; Mp, Monascus purpureus; Nsp., Nodulisporium sp. strain ATCC 74245. Domains: SAT, starter unit ACP transacylase domain (superscript letters indicate an amino acid other than C at the third position of the active site); KS, β-ketoacyl synthase domain; MAT, malonyl-CoA:ACP transacylase domain; PT, product template domain; ACP, acyl carrier protein domain; TE, thioesterase domain; TE/CLC, thioesterase/Claisen cyclase domain; R, reductase domain; DH, dehydratase domain; ER, enoyl reductase domain; KR, keto reductase domain; CMet, C-methyltransferase domain. (B) The components of the fsr gene cluster, fsr1 to fsr6, are depicted as filled rectangles. The first genes upstream (FF_03983) and downstream (FF_03990) are shaded. Arrows indicate the direction of translation, and open bars represent introns within the gene.
    Exophiala Dermatitidis, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/exophiala dermatitidis/product/ATCC
    Average 86 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    exophiala dermatitidis - by Bioz Stars, 2024-03
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    Phylogeny, PKS domains, and the gene cluster. (A) KS domains of fungal PKSs used for the analysis were extracted, and a phylogram was generated as described in Materials and Methods. For characterized PKSs, the leaves of the phylogram are labeled with the organism, protein name, and GenBank accession number (EMBL database). For uncharacterized Fusarium PKSs, the Broad Institute identification is given for F. graminearum (FGSG), F. oxysporum (FOXG), and F. verticillioides (FVEG), and the Joint Genome Institute identification is given for F. solani. The domain architecture of each PKS and the chemical product produced are given on the right. Branches with branch support values of <0.5 were collapsed. The KS domain of the highly reducing PKS Fum1 was used as an outgroup. The bar represents 0.3 character change. Organisms: Af, Aspergillus fumigatus; An, A. nidulans; Ap, A. parasiticus; As, Acremonium strictum; At, Aspergillus terreus; Cl, Colletotrichum lagenarium; Cn, Cercospora nicotianae; Ds, Dothistroma septosporum; Ed, Exophiala dermatitidis; Fg, F. graminearum; Ff, F. fujikuroi; Fs, F. solani; Fv, F. verticillioides; Gl, Glarea lozoyensis; Mp, Monascus purpureus; Nsp., Nodulisporium sp. strain ATCC 74245. Domains: SAT, starter unit ACP transacylase domain (superscript letters indicate an amino acid other than C at the third position of the active site); KS, β-ketoacyl synthase domain; MAT, malonyl-CoA:ACP transacylase domain; PT, product template domain; ACP, acyl carrier protein domain; TE, thioesterase domain; TE/CLC, thioesterase/Claisen cyclase domain; R, reductase domain; DH, dehydratase domain; ER, enoyl reductase domain; KR, keto reductase domain; CMet, C-methyltransferase domain. (B) The components of the fsr gene cluster, fsr1 to fsr6, are depicted as filled rectangles. The first genes upstream (FF_03983) and downstream (FF_03990) are shaded. Arrows indicate the direction of translation, and open bars represent introns within the gene.

    Journal: Applied and Environmental Microbiology

    Article Title: Biosynthesis of Fusarubins Accounts for Pigmentation of Fusarium fujikuroi Perithecia

    doi: 10.1128/AEM.00823-12

    Figure Lengend Snippet: Phylogeny, PKS domains, and the gene cluster. (A) KS domains of fungal PKSs used for the analysis were extracted, and a phylogram was generated as described in Materials and Methods. For characterized PKSs, the leaves of the phylogram are labeled with the organism, protein name, and GenBank accession number (EMBL database). For uncharacterized Fusarium PKSs, the Broad Institute identification is given for F. graminearum (FGSG), F. oxysporum (FOXG), and F. verticillioides (FVEG), and the Joint Genome Institute identification is given for F. solani. The domain architecture of each PKS and the chemical product produced are given on the right. Branches with branch support values of <0.5 were collapsed. The KS domain of the highly reducing PKS Fum1 was used as an outgroup. The bar represents 0.3 character change. Organisms: Af, Aspergillus fumigatus; An, A. nidulans; Ap, A. parasiticus; As, Acremonium strictum; At, Aspergillus terreus; Cl, Colletotrichum lagenarium; Cn, Cercospora nicotianae; Ds, Dothistroma septosporum; Ed, Exophiala dermatitidis; Fg, F. graminearum; Ff, F. fujikuroi; Fs, F. solani; Fv, F. verticillioides; Gl, Glarea lozoyensis; Mp, Monascus purpureus; Nsp., Nodulisporium sp. strain ATCC 74245. Domains: SAT, starter unit ACP transacylase domain (superscript letters indicate an amino acid other than C at the third position of the active site); KS, β-ketoacyl synthase domain; MAT, malonyl-CoA:ACP transacylase domain; PT, product template domain; ACP, acyl carrier protein domain; TE, thioesterase domain; TE/CLC, thioesterase/Claisen cyclase domain; R, reductase domain; DH, dehydratase domain; ER, enoyl reductase domain; KR, keto reductase domain; CMet, C-methyltransferase domain. (B) The components of the fsr gene cluster, fsr1 to fsr6, are depicted as filled rectangles. The first genes upstream (FF_03983) and downstream (FF_03990) are shaded. Arrows indicate the direction of translation, and open bars represent introns within the gene.

    Article Snippet: Organisms: Af , Aspergillus fumigatus ; An , A. nidulans ; Ap , A. parasiticus ; As , Acremonium strictum ; At , Aspergillus terreus ; Cl , Colletotrichum lagenarium ; Cn , Cercospora nicotianae ; Ds , Dothistroma septosporum ; Ed , Exophiala dermatitidis ; Fg , F. graminearum ; Ff , F. fujikuroi ; Fs , F. solani ; Fv , F. verticillioides ; Gl , Glarea lozoyensis ; Mp , Monascus purpureus ; N sp., Nodulisporium sp. strain ATCC 74245.

    Techniques: Generated, Labeling, Produced