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Journal: Frontiers in Molecular Biosciences
Article Title: Serum proteomic profiling of precancerous gastric lesions and early gastric cancer reveals signatures associated with systemic inflammatory response and metaplastic differentiation
doi: 10.3389/fmolb.2024.1252058
Figure Lengend Snippet: DEPs coincident with the tissue expression. (A) Numbers of DEPs coincident with the tissue expression. (B) DEPs which were mainly expressed by enterocytes in single-cell RNA data of gastric tissue samples. (C) DEPs with high expression specificity in enterocyte in Human Protein Atlas data. (D) APOA4 levels in the gastric tissue samples. The barplot is the statistical result of the optical density analysis of IHC images. These tissue samples include NAG ( n = 10), IM ( n = 16), and GC ( n = 16). * p < 0.05; ** p < 0.01. (E) DEPs which were mainly expressed by epithelial cells in single-cell RNA data. (F) Fold changes of DEPs across cell types in pre-GC vs gastritis/normal comparison group. (G) DEPs coincident with the RNA datasets, GSE55696 and GSE130823. (H–J) ROC curves of the random forest models using the signature, APOA4, SERPINA4, and GCA.
Article Snippet:
Techniques: Expressing, Comparison
Journal: The Journal of Experimental Medicine
Article Title: Single-cell transcriptome analysis reveals differential nutrient absorption functions in human intestine
doi: 10.1084/jem.20191130
Figure Lengend Snippet: Expression patterns of transporter genes and validation by immunofluorescence or immunohistochemistry. (A) Expression patterns of eight selected transporter genes in different intestine segments. Each dot represents a gene, of which the color saturation indicates the average expression level (scaled by Z-score) in an intestine segment and the size indicates the percentage of cells expressing the gene. (B, C, and E–G) Immunofluorescence was performed to confirm the expression of APOB (B) and FABP6 (D) in the ileum and SLC38A1 (E), SLC26A2 (F), and SLC44A1 (G) in the colon and rectum. (C, H, and I) Immunohistochemistry was performed to confirm the expression of APOA4 in the ileum (C) and SCNN1B (H) and SLC35A1 (I) in the colon and rectum. Scale bars, 100 μm.
Article Snippet: Rabbit anti-LYZ (1:200, ab108508; Abcam), mouse anti-MUC2 (1:200, ab11197; Abcam), rabbit anti-NUSAP1 (1:100, 12024–1-AP; Proteintech), mouse-anti Ki67 (1:300, 9449s; CST), mouse anti-E-Cad (1:1,000, 610182; BD Biosciences), rabbit anti-ITLN1 (1:50, 11770–1-AP; Proteintech), rabbit anti-TFF1 (1:50, 13734–1-AP; Proteintech), rabbit anti-APOB (1:50, 20578–1-AP; Proteintech),
Techniques: Expressing, Immunofluorescence, Immunohistochemistry