Journal: Frontiers in Microbiology

Article Title: Development of an in vitro Model of Human Gut Microbiota for Screening the Reciprocal Interactions With Antibiotics, Drugs, and Xenobiotics

doi: 10.3389/fmicb.2022.828359

Figure Lengend Snippet: List of the bacterial strains selected from the literature to construct the human gut microbiota model.

Article Snippet: , Ruminococcus flavefaciens , ATCC 49949 , +.

Techniques: Construct

Journal: Frontiers in Microbiology

Article Title: Development of an in vitro Model of Human Gut Microbiota for Screening the Reciprocal Interactions With Antibiotics, Drugs, and Xenobiotics

doi: 10.3389/fmicb.2022.828359

Figure Lengend Snippet: Summary of the HGMM reciprocal interactions with the 36 tested antibiotics, drugs, and xenobiotics, and prediction of bacterial species potentially implied in its transformation.

Article Snippet: , Ruminococcus flavefaciens , ATCC 49949 , +.

Techniques: Transformation Assay

Journal: Gut Microbes

Article Title: Cellulolytic bacteria in the large intestine of mammals

doi: 10.1080/19490976.2022.2031694

Figure Lengend Snippet: Cellulolytic strains isolated from the large intestine and type strains isolated from the rumen: collection number, authors and date of isolation, metabolism and accession number for rRNA 16S sequences. 20–24 , 26–28 , 44 , 52–54 , 62 , 68–73 The carbohydrates consumed and end products are indicated by the following letters: Glu, glucose; Cel, cellobiose; Mal, maltose; Lac, lactose; Ara, arabinose; Xyl, xylose; Gal, galactose; Fru, fructose; Sac, saccharose; Raf, raffinose; Rib, Ribose; Man, mannose; AG, galacturonic acid; Mel, melibiose; A, acetate; S, succinate; F, format; L, lactate; E, ethanol; H, hydrogen. ND, not determined

Article Snippet: , C52 (ATCC 49949) , Varel , 1984 , pig cecum , Cel, Ara , A, S, E , , .

Techniques: Isolation

Journal: Microbial Genomics

Article Title: Dissemination of novel Tn 7 family transposons carrying genes for synthesis and uptake of fimsbactin siderophores among Acinetobacter baumannii isolates

doi: 10.1099/mgen.0.000548

Figure Lengend Snippet: Properties of strains carrying a Tn 6171 transposon or variant Complete genomes are highlighted in grey.

Article Snippet: It was noted that the chromosome of D36 carries a 49.9 kbp transposon, designated Tn 6171 , which carries a siderophore synthesis gene cluster previously seen only in ATCC 17978 and also encodes transposition proteins related to those of Tn 7 [ ].

Techniques: Variant Assay

Journal: Microbial Genomics

Article Title: Dissemination of novel Tn 7 family transposons carrying genes for synthesis and uptake of fimsbactin siderophores among Acinetobacter baumannii isolates

doi: 10.1099/mgen.0.000548

Figure Lengend Snippet: IR and transposon binding sites of Tn 6171 . ( a ) Sequence at the left and right end of Tn 6171 is shown in upper-case letters, and the flanking 5 bp TSD is in red lower-case letters. The extent of transposon binding sites is indicated using horizontal arrows numbered L1–4 and R1–3. ( b ) Alignment of the transposase binding sites. Conserved residues are shown using white letters on black, and partially conserved residues are indicated using red and yellow letters on black. ( c ) Sequence conservation of transposon binding sites presented by a WebLogo drawn online using software available at https://weblogo.berkeley.edu/logo.cgi .

Article Snippet: It was noted that the chromosome of D36 carries a 49.9 kbp transposon, designated Tn 6171 , which carries a siderophore synthesis gene cluster previously seen only in ATCC 17978 and also encodes transposition proteins related to those of Tn 7 [ ].

Techniques: Binding Assay, Sequencing, Software

Journal: Microbial Genomics

Article Title: Dissemination of novel Tn 7 family transposons carrying genes for synthesis and uptake of fimsbactin siderophores among Acinetobacter baumannii isolates

doi: 10.1099/mgen.0.000548

Figure Lengend Snippet: Whole-genome recombination-free phylogenetic tree of GC1s. Coloured nodes indicate the country of origin (see the key in the bottom left corner). Vertical red arrows indicate the acquisition of Tn 6171 or a related transposon. Institut Pasteur STs for each strain or strain set are indicated next to the black/grey vertical lines on the right of the figure. Lineages are also shown using square brackets. Lineage 2 strains with MRSN codes were isolated in the USA from soldiers recently returned from Afghanistan. The scale bar shown indicates the number of substitutions per site.

Article Snippet: It was noted that the chromosome of D36 carries a 49.9 kbp transposon, designated Tn 6171 , which carries a siderophore synthesis gene cluster previously seen only in ATCC 17978 and also encodes transposition proteins related to those of Tn 7 [ ].

Techniques: Isolation

Journal: BMC Microbiology

Article Title: Molecular and taxonomic characterization of arsenic (As) transforming Bacillus sp. strain IIIJ3–1 isolated from As-contaminated groundwater of Brahmaputra river basin, India

doi: 10.1186/s12866-020-01893-6

Figure Lengend Snippet: Differential phenotypic and biochemical characteristics of Bacillus cereus strain IIIJ3–1 and taxonomically and metabolically related species.

Article Snippet: Near complete 16S rRNA gene sequence affiliated the strain IIIJ3–1 to the genus Bacillus and phylogenetically placed within members of B. cereus sensu lato group with B. cereus ATCC 14579(T) as its closest relative with a low DNA-DNA relatedness (49.9%).

Techniques: Metabolic Labelling

Journal: BMC Microbiology

Article Title: Molecular and taxonomic characterization of arsenic (As) transforming Bacillus sp. strain IIIJ3–1 isolated from As-contaminated groundwater of Brahmaputra river basin, India

doi: 10.1186/s12866-020-01893-6

Figure Lengend Snippet: Fatty acid composition of Bacillus cereus strain IIIJ3-1 and taxonomically related Bacillus species

Article Snippet: Near complete 16S rRNA gene sequence affiliated the strain IIIJ3–1 to the genus Bacillus and phylogenetically placed within members of B. cereus sensu lato group with B. cereus ATCC 14579(T) as its closest relative with a low DNA-DNA relatedness (49.9%).

Techniques: