halorubrum lacusprofundi atcc 49239  (ATCC)


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    ATCC halorubrum lacusprofundi atcc 49239
    Halorubrum Lacusprofundi Atcc 49239, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    halorubrum lacusprofundi atcc 49239 andhalobacterium noricense a1  (ATCC)


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    ATCC halorubrum lacusprofundi atcc 49239 andhalobacterium noricense a1
    Halorubrum Lacusprofundi Atcc 49239 Andhalobacterium Noricense A1, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    halorubrum lacusprofundi atcc 49239  (ATCC)


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    ATCC halorubrum lacusprofundi atcc 49239
    Halorubrum Lacusprofundi Atcc 49239, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    halorubrum lacusprofundi atcc 49239  (ATCC)


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    ATCC halorubrum lacusprofundi atcc 49239
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    halorubrum lacusprofundi atcc 49239  (ATCC)


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    ATCC halorubrum lacusprofundi atcc 49239
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    halorubrum lacusprofundi  (ATCC)


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    ATCC halorubrum lacusprofundi
    Insertion sequence (IS) elements in five halophiles. For the reference genome of Halobacterium sp. NRC-1, the copy numbers of the IS are listed, while for the partial genome sequences of other halophiles, the sequence numbers that matched the IS elements are shown. More IS elements were identified from <t> H. lacusprofundi </t> and H. marismortui than from H. gomorrense and N. asiatica.
    Halorubrum Lacusprofundi, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Low-pass sequencing for microbial comparative genomics"

    Article Title: Low-pass sequencing for microbial comparative genomics

    Journal: BMC Genomics

    doi: 10.1186/1471-2164-5-3

    Insertion sequence (IS) elements in five halophiles. For the reference genome of Halobacterium sp. NRC-1, the copy numbers of the IS are listed, while for the partial genome sequences of other halophiles, the sequence numbers that matched the IS elements are shown. More IS elements were identified from  H. lacusprofundi  and H. marismortui than from H. gomorrense and N. asiatica.
    Figure Legend Snippet: Insertion sequence (IS) elements in five halophiles. For the reference genome of Halobacterium sp. NRC-1, the copy numbers of the IS are listed, while for the partial genome sequences of other halophiles, the sequence numbers that matched the IS elements are shown. More IS elements were identified from H. lacusprofundi and H. marismortui than from H. gomorrense and N. asiatica.

    Techniques Used: Sequencing

    GC distribution for five partially sequenced genomes. GC distribution of Halobacterium sp. NRC-1 (unmarked line), Halobaculum gomorrense (asterisks), Halorubrum lacusprofundi (filled triangles), Haloarcula marismortui (squares), and Natrialba asiatica (filled squares) are indicated. Average GC contents for H. sp. NRC-1, H. gomorrense, H. lacusprofundi, H. marismortui , and N. asiatica were 66%, 65.1%, 61.4%, 60%, and 61.2%, respectively.
    Figure Legend Snippet: GC distribution for five partially sequenced genomes. GC distribution of Halobacterium sp. NRC-1 (unmarked line), Halobaculum gomorrense (asterisks), Halorubrum lacusprofundi (filled triangles), Haloarcula marismortui (squares), and Natrialba asiatica (filled squares) are indicated. Average GC contents for H. sp. NRC-1, H. gomorrense, H. lacusprofundi, H. marismortui , and N. asiatica were 66%, 65.1%, 61.4%, 60%, and 61.2%, respectively.

    Techniques Used:

    Calculated isoelectric point (pI) versus number of predicted proteins. Predicted isoelectric points from four halophiles and random H. sp. NRC-1 proteins were plotted [ H. gomorrense (Hg), H. lacusprofundi (Hl), H. marismortui (Hm), N. asiatica (Na), and random H. sp. NRC-1 (rNRC-1)]. All halophiles show the highest peak at pI between ~4.1 and ~4.3 with median pI range from 4.3 to 4.4.
    Figure Legend Snippet: Calculated isoelectric point (pI) versus number of predicted proteins. Predicted isoelectric points from four halophiles and random H. sp. NRC-1 proteins were plotted [ H. gomorrense (Hg), H. lacusprofundi (Hl), H. marismortui (Hm), N. asiatica (Na), and random H. sp. NRC-1 (rNRC-1)]. All halophiles show the highest peak at pI between ~4.1 and ~4.3 with median pI range from 4.3 to 4.4.

    Techniques Used:

    Detection of the conserved gene order between Halobacterium sp. NRC-1 and halophiles. Sequence reads matched to observed H. sp. NRC-1 genes, number of physically linked genes, and gene names or numbers are listed for each halophile.
    Figure Legend Snippet: Detection of the conserved gene order between Halobacterium sp. NRC-1 and halophiles. Sequence reads matched to observed H. sp. NRC-1 genes, number of physically linked genes, and gene names or numbers are listed for each halophile.

    Techniques Used: Sequencing

    Sequence alignments for TFB proteins. Sequences for seven Halobacterium sp. NRC-1 TFBs and five predicted TFBs from H. lacusprofundi (Hl), H. gomorrense (Hg), and N. asiatica (Na) were aligned. Amino acids conserved in at least six of the twelve sequences are shaded (the amino acid involved in interaction with TBP are shaded in black). The boxed region indicates likely Zn-finger domains [(CXXC)X{15–17}(CXXC)]. Helix-turn-helix DNA binding motifs are underlined.
    Figure Legend Snippet: Sequence alignments for TFB proteins. Sequences for seven Halobacterium sp. NRC-1 TFBs and five predicted TFBs from H. lacusprofundi (Hl), H. gomorrense (Hg), and N. asiatica (Na) were aligned. Amino acids conserved in at least six of the twelve sequences are shaded (the amino acid involved in interaction with TBP are shaded in black). The boxed region indicates likely Zn-finger domains [(CXXC)X{15–17}(CXXC)]. Helix-turn-helix DNA binding motifs are underlined.

    Techniques Used: Sequencing, Binding Assay

    Unrooted molecular tree of TFB protein family. Newly identified TfbF proteins from H. lacusprofundi (Hl), N. asiatica (Na), and H. gomorrense (Hg) and TfbG from H. lacusprofundi show orthology with TfbF and TfbG of H. sp. NRC-1. Orthology was supported by the high bootstrap scores (numbers on the branch) generated by 1000 replicates. The results suggest similar structural and functional characteristics between TFB proteins among the halophiles.
    Figure Legend Snippet: Unrooted molecular tree of TFB protein family. Newly identified TfbF proteins from H. lacusprofundi (Hl), N. asiatica (Na), and H. gomorrense (Hg) and TfbG from H. lacusprofundi show orthology with TfbF and TfbG of H. sp. NRC-1. Orthology was supported by the high bootstrap scores (numbers on the branch) generated by 1000 replicates. The results suggest similar structural and functional characteristics between TFB proteins among the halophiles.

    Techniques Used: Generated, Functional Assay

    halorubrum lacusprofundi atcc 49239  (ATCC)


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    ATCC halorubrum lacusprofundi atcc 49239
    Heme biosynthesis genes in Archaea.
    Halorubrum Lacusprofundi Atcc 49239, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "A Novel Pathway for the Biosynthesis of Heme in Archaea : Genome-Based Bioinformatic Predictions and Experimental Evidence"

    Article Title: A Novel Pathway for the Biosynthesis of Heme in Archaea : Genome-Based Bioinformatic Predictions and Experimental Evidence

    Journal: Archaea

    doi: 10.1155/2010/175050

    Heme biosynthesis genes in Archaea.
    Figure Legend Snippet: Heme biosynthesis genes in Archaea.

    Techniques Used:

    halorubrum lacusprofundi atcc 49239  (ATCC)


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    ATCC halorubrum lacusprofundi atcc 49239
    ArsA homologues used to generate the phylogenetic tree. From left to right, the proteins are characterized according to cluster and abbreviation, organismal source, protein size, organismal type, and gi number. Within each cluster, proteins are presented according to position going clockwise around the tree.
    Halorubrum Lacusprofundi Atcc 49239, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Functional Promiscuity of Homologues of the Bacterial ArsA ATPases"

    Article Title: Functional Promiscuity of Homologues of the Bacterial ArsA ATPases

    Journal: International Journal of Microbiology

    doi: 10.1155/2010/187373

    ArsA homologues used to generate the phylogenetic tree. From left to right, the proteins are characterized according to cluster and abbreviation, organismal source, protein size, organismal type, and gi number. Within each cluster, proteins are presented according to position going clockwise around the tree.
    Figure Legend Snippet: ArsA homologues used to generate the phylogenetic tree. From left to right, the proteins are characterized according to cluster and abbreviation, organismal source, protein size, organismal type, and gi number. Within each cluster, proteins are presented according to position going clockwise around the tree.

    Techniques Used:

    halorubrum lacusprofundi atcc 49239  (ATCC)


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    ATCC halorubrum lacusprofundi atcc 49239
    ArsA homologues used to generate the phylogenetic tree. From left to right, the proteins are characterized according to cluster and abbreviation, organismal source, protein size, organismal type, and gi number. Within each cluster, proteins are presented according to position going clockwise around the tree.
    Halorubrum Lacusprofundi Atcc 49239, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Functional Promiscuity of Homologues of the Bacterial ArsA ATPases"

    Article Title: Functional Promiscuity of Homologues of the Bacterial ArsA ATPases

    Journal: International Journal of Microbiology

    doi: 10.1155/2010/187373

    ArsA homologues used to generate the phylogenetic tree. From left to right, the proteins are characterized according to cluster and abbreviation, organismal source, protein size, organismal type, and gi number. Within each cluster, proteins are presented according to position going clockwise around the tree.
    Figure Legend Snippet: ArsA homologues used to generate the phylogenetic tree. From left to right, the proteins are characterized according to cluster and abbreviation, organismal source, protein size, organismal type, and gi number. Within each cluster, proteins are presented according to position going clockwise around the tree.

    Techniques Used:

    halorubrum lacusprofundi atcc 49239  (ATCC)


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    ATCC halorubrum lacusprofundi atcc 49239
    ArsA homologues used to generate the phylogenetic tree. From left to right, the proteins are characterized according to cluster and abbreviation, organismal source, protein size, organismal type, and gi number. Within each cluster, proteins are presented according to position going clockwise around the tree.
    Halorubrum Lacusprofundi Atcc 49239, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Functional Promiscuity of Homologues of the Bacterial ArsA ATPases"

    Article Title: Functional Promiscuity of Homologues of the Bacterial ArsA ATPases

    Journal: International Journal of Microbiology

    doi: 10.1155/2010/187373

    ArsA homologues used to generate the phylogenetic tree. From left to right, the proteins are characterized according to cluster and abbreviation, organismal source, protein size, organismal type, and gi number. Within each cluster, proteins are presented according to position going clockwise around the tree.
    Figure Legend Snippet: ArsA homologues used to generate the phylogenetic tree. From left to right, the proteins are characterized according to cluster and abbreviation, organismal source, protein size, organismal type, and gi number. Within each cluster, proteins are presented according to position going clockwise around the tree.

    Techniques Used:

    lacusprofundi atcc 49239  (ATCC)


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    ATCC lacusprofundi atcc 49239
    Lacusprofundi Atcc 49239, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC halorubrum lacusprofundi atcc 49239
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    ATCC halorubrum lacusprofundi atcc 49239 andhalobacterium noricense a1
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    ATCC halorubrum lacusprofundi
    Insertion sequence (IS) elements in five halophiles. For the reference genome of Halobacterium sp. NRC-1, the copy numbers of the IS are listed, while for the partial genome sequences of other halophiles, the sequence numbers that matched the IS elements are shown. More IS elements were identified from <t> H. lacusprofundi </t> and H. marismortui than from H. gomorrense and N. asiatica.
    Halorubrum Lacusprofundi, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC lacusprofundi atcc 49239
    Insertion sequence (IS) elements in five halophiles. For the reference genome of Halobacterium sp. NRC-1, the copy numbers of the IS are listed, while for the partial genome sequences of other halophiles, the sequence numbers that matched the IS elements are shown. More IS elements were identified from <t> H. lacusprofundi </t> and H. marismortui than from H. gomorrense and N. asiatica.
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    Insertion sequence (IS) elements in five halophiles. For the reference genome of Halobacterium sp. NRC-1, the copy numbers of the IS are listed, while for the partial genome sequences of other halophiles, the sequence numbers that matched the IS elements are shown. More IS elements were identified from  H. lacusprofundi  and H. marismortui than from H. gomorrense and N. asiatica.

    Journal: BMC Genomics

    Article Title: Low-pass sequencing for microbial comparative genomics

    doi: 10.1186/1471-2164-5-3

    Figure Lengend Snippet: Insertion sequence (IS) elements in five halophiles. For the reference genome of Halobacterium sp. NRC-1, the copy numbers of the IS are listed, while for the partial genome sequences of other halophiles, the sequence numbers that matched the IS elements are shown. More IS elements were identified from H. lacusprofundi and H. marismortui than from H. gomorrense and N. asiatica.

    Article Snippet: Haloarcula marismortui (ATCC#: 43049), Halobaculum gomorrense (ATCC#: 700876), Halorubrum lacusprofundi (ATCC#: 49239), and Natrialba asiatica (ATCC#: 700177) were cultured in ATCC media 1218, 2169, 1682, and 805, respectively, prepared according to the directions from ATCC.

    Techniques: Sequencing

    GC distribution for five partially sequenced genomes. GC distribution of Halobacterium sp. NRC-1 (unmarked line), Halobaculum gomorrense (asterisks), Halorubrum lacusprofundi (filled triangles), Haloarcula marismortui (squares), and Natrialba asiatica (filled squares) are indicated. Average GC contents for H. sp. NRC-1, H. gomorrense, H. lacusprofundi, H. marismortui , and N. asiatica were 66%, 65.1%, 61.4%, 60%, and 61.2%, respectively.

    Journal: BMC Genomics

    Article Title: Low-pass sequencing for microbial comparative genomics

    doi: 10.1186/1471-2164-5-3

    Figure Lengend Snippet: GC distribution for five partially sequenced genomes. GC distribution of Halobacterium sp. NRC-1 (unmarked line), Halobaculum gomorrense (asterisks), Halorubrum lacusprofundi (filled triangles), Haloarcula marismortui (squares), and Natrialba asiatica (filled squares) are indicated. Average GC contents for H. sp. NRC-1, H. gomorrense, H. lacusprofundi, H. marismortui , and N. asiatica were 66%, 65.1%, 61.4%, 60%, and 61.2%, respectively.

    Article Snippet: Haloarcula marismortui (ATCC#: 43049), Halobaculum gomorrense (ATCC#: 700876), Halorubrum lacusprofundi (ATCC#: 49239), and Natrialba asiatica (ATCC#: 700177) were cultured in ATCC media 1218, 2169, 1682, and 805, respectively, prepared according to the directions from ATCC.

    Techniques:

    Calculated isoelectric point (pI) versus number of predicted proteins. Predicted isoelectric points from four halophiles and random H. sp. NRC-1 proteins were plotted [ H. gomorrense (Hg), H. lacusprofundi (Hl), H. marismortui (Hm), N. asiatica (Na), and random H. sp. NRC-1 (rNRC-1)]. All halophiles show the highest peak at pI between ~4.1 and ~4.3 with median pI range from 4.3 to 4.4.

    Journal: BMC Genomics

    Article Title: Low-pass sequencing for microbial comparative genomics

    doi: 10.1186/1471-2164-5-3

    Figure Lengend Snippet: Calculated isoelectric point (pI) versus number of predicted proteins. Predicted isoelectric points from four halophiles and random H. sp. NRC-1 proteins were plotted [ H. gomorrense (Hg), H. lacusprofundi (Hl), H. marismortui (Hm), N. asiatica (Na), and random H. sp. NRC-1 (rNRC-1)]. All halophiles show the highest peak at pI between ~4.1 and ~4.3 with median pI range from 4.3 to 4.4.

    Article Snippet: Haloarcula marismortui (ATCC#: 43049), Halobaculum gomorrense (ATCC#: 700876), Halorubrum lacusprofundi (ATCC#: 49239), and Natrialba asiatica (ATCC#: 700177) were cultured in ATCC media 1218, 2169, 1682, and 805, respectively, prepared according to the directions from ATCC.

    Techniques:

    Detection of the conserved gene order between Halobacterium sp. NRC-1 and halophiles. Sequence reads matched to observed H. sp. NRC-1 genes, number of physically linked genes, and gene names or numbers are listed for each halophile.

    Journal: BMC Genomics

    Article Title: Low-pass sequencing for microbial comparative genomics

    doi: 10.1186/1471-2164-5-3

    Figure Lengend Snippet: Detection of the conserved gene order between Halobacterium sp. NRC-1 and halophiles. Sequence reads matched to observed H. sp. NRC-1 genes, number of physically linked genes, and gene names or numbers are listed for each halophile.

    Article Snippet: Haloarcula marismortui (ATCC#: 43049), Halobaculum gomorrense (ATCC#: 700876), Halorubrum lacusprofundi (ATCC#: 49239), and Natrialba asiatica (ATCC#: 700177) were cultured in ATCC media 1218, 2169, 1682, and 805, respectively, prepared according to the directions from ATCC.

    Techniques: Sequencing

    Sequence alignments for TFB proteins. Sequences for seven Halobacterium sp. NRC-1 TFBs and five predicted TFBs from H. lacusprofundi (Hl), H. gomorrense (Hg), and N. asiatica (Na) were aligned. Amino acids conserved in at least six of the twelve sequences are shaded (the amino acid involved in interaction with TBP are shaded in black). The boxed region indicates likely Zn-finger domains [(CXXC)X{15–17}(CXXC)]. Helix-turn-helix DNA binding motifs are underlined.

    Journal: BMC Genomics

    Article Title: Low-pass sequencing for microbial comparative genomics

    doi: 10.1186/1471-2164-5-3

    Figure Lengend Snippet: Sequence alignments for TFB proteins. Sequences for seven Halobacterium sp. NRC-1 TFBs and five predicted TFBs from H. lacusprofundi (Hl), H. gomorrense (Hg), and N. asiatica (Na) were aligned. Amino acids conserved in at least six of the twelve sequences are shaded (the amino acid involved in interaction with TBP are shaded in black). The boxed region indicates likely Zn-finger domains [(CXXC)X{15–17}(CXXC)]. Helix-turn-helix DNA binding motifs are underlined.

    Article Snippet: Haloarcula marismortui (ATCC#: 43049), Halobaculum gomorrense (ATCC#: 700876), Halorubrum lacusprofundi (ATCC#: 49239), and Natrialba asiatica (ATCC#: 700177) were cultured in ATCC media 1218, 2169, 1682, and 805, respectively, prepared according to the directions from ATCC.

    Techniques: Sequencing, Binding Assay

    Unrooted molecular tree of TFB protein family. Newly identified TfbF proteins from H. lacusprofundi (Hl), N. asiatica (Na), and H. gomorrense (Hg) and TfbG from H. lacusprofundi show orthology with TfbF and TfbG of H. sp. NRC-1. Orthology was supported by the high bootstrap scores (numbers on the branch) generated by 1000 replicates. The results suggest similar structural and functional characteristics between TFB proteins among the halophiles.

    Journal: BMC Genomics

    Article Title: Low-pass sequencing for microbial comparative genomics

    doi: 10.1186/1471-2164-5-3

    Figure Lengend Snippet: Unrooted molecular tree of TFB protein family. Newly identified TfbF proteins from H. lacusprofundi (Hl), N. asiatica (Na), and H. gomorrense (Hg) and TfbG from H. lacusprofundi show orthology with TfbF and TfbG of H. sp. NRC-1. Orthology was supported by the high bootstrap scores (numbers on the branch) generated by 1000 replicates. The results suggest similar structural and functional characteristics between TFB proteins among the halophiles.

    Article Snippet: Haloarcula marismortui (ATCC#: 43049), Halobaculum gomorrense (ATCC#: 700876), Halorubrum lacusprofundi (ATCC#: 49239), and Natrialba asiatica (ATCC#: 700177) were cultured in ATCC media 1218, 2169, 1682, and 805, respectively, prepared according to the directions from ATCC.

    Techniques: Generated, Functional Assay