halorubrum lacusprofundi atcc 49239t  (ATCC)

Journal: BMC Genomics

Article Title: Low-pass sequencing for microbial comparative genomics

doi: 10.1186/1471-2164-5-3

Figure Lengend Snippet: Insertion sequence (IS) elements in five halophiles. For the reference genome of Halobacterium sp. NRC-1, the copy numbers of the IS are listed, while for the partial genome sequences of other halophiles, the sequence numbers that matched the IS elements are shown. More IS elements were identified from H. lacusprofundi and H. marismortui than from H. gomorrense and N. asiatica.

Article Snippet: Haloarcula marismortui (ATCC#: 43049), Halobaculum gomorrense (ATCC#: 700876), Halorubrum lacusprofundi (ATCC#: 49239), and Natrialba asiatica (ATCC#: 700177) were cultured in ATCC media 1218, 2169, 1682, and 805, respectively, prepared according to the directions from ATCC.

Techniques: Sequencing

Journal: BMC Genomics

Article Title: Low-pass sequencing for microbial comparative genomics

doi: 10.1186/1471-2164-5-3

Figure Lengend Snippet: GC distribution for five partially sequenced genomes. GC distribution of Halobacterium sp. NRC-1 (unmarked line), Halobaculum gomorrense (asterisks), Halorubrum lacusprofundi (filled triangles), Haloarcula marismortui (squares), and Natrialba asiatica (filled squares) are indicated. Average GC contents for H. sp. NRC-1, H. gomorrense, H. lacusprofundi, H. marismortui , and N. asiatica were 66%, 65.1%, 61.4%, 60%, and 61.2%, respectively.

Article Snippet: Haloarcula marismortui (ATCC#: 43049), Halobaculum gomorrense (ATCC#: 700876), Halorubrum lacusprofundi (ATCC#: 49239), and Natrialba asiatica (ATCC#: 700177) were cultured in ATCC media 1218, 2169, 1682, and 805, respectively, prepared according to the directions from ATCC.

Techniques:

Journal: BMC Genomics

Article Title: Low-pass sequencing for microbial comparative genomics

doi: 10.1186/1471-2164-5-3

Figure Lengend Snippet: Calculated isoelectric point (pI) versus number of predicted proteins. Predicted isoelectric points from four halophiles and random H. sp. NRC-1 proteins were plotted [ H. gomorrense (Hg), H. lacusprofundi (Hl), H. marismortui (Hm), N. asiatica (Na), and random H. sp. NRC-1 (rNRC-1)]. All halophiles show the highest peak at pI between ~4.1 and ~4.3 with median pI range from 4.3 to 4.4.

Article Snippet: Haloarcula marismortui (ATCC#: 43049), Halobaculum gomorrense (ATCC#: 700876), Halorubrum lacusprofundi (ATCC#: 49239), and Natrialba asiatica (ATCC#: 700177) were cultured in ATCC media 1218, 2169, 1682, and 805, respectively, prepared according to the directions from ATCC.

Techniques:

Journal: BMC Genomics

Article Title: Low-pass sequencing for microbial comparative genomics

doi: 10.1186/1471-2164-5-3

Figure Lengend Snippet: Detection of the conserved gene order between Halobacterium sp. NRC-1 and halophiles. Sequence reads matched to observed H. sp. NRC-1 genes, number of physically linked genes, and gene names or numbers are listed for each halophile.

Article Snippet: Haloarcula marismortui (ATCC#: 43049), Halobaculum gomorrense (ATCC#: 700876), Halorubrum lacusprofundi (ATCC#: 49239), and Natrialba asiatica (ATCC#: 700177) were cultured in ATCC media 1218, 2169, 1682, and 805, respectively, prepared according to the directions from ATCC.

Techniques: Sequencing

Journal: BMC Genomics

Article Title: Low-pass sequencing for microbial comparative genomics

doi: 10.1186/1471-2164-5-3

Figure Lengend Snippet: Sequence alignments for TFB proteins. Sequences for seven Halobacterium sp. NRC-1 TFBs and five predicted TFBs from H. lacusprofundi (Hl), H. gomorrense (Hg), and N. asiatica (Na) were aligned. Amino acids conserved in at least six of the twelve sequences are shaded (the amino acid involved in interaction with TBP are shaded in black). The boxed region indicates likely Zn-finger domains [(CXXC)X{15–17}(CXXC)]. Helix-turn-helix DNA binding motifs are underlined.

Article Snippet: Haloarcula marismortui (ATCC#: 43049), Halobaculum gomorrense (ATCC#: 700876), Halorubrum lacusprofundi (ATCC#: 49239), and Natrialba asiatica (ATCC#: 700177) were cultured in ATCC media 1218, 2169, 1682, and 805, respectively, prepared according to the directions from ATCC.

Techniques: Sequencing, Binding Assay

Journal: BMC Genomics

Article Title: Low-pass sequencing for microbial comparative genomics

doi: 10.1186/1471-2164-5-3

Figure Lengend Snippet: Unrooted molecular tree of TFB protein family. Newly identified TfbF proteins from H. lacusprofundi (Hl), N. asiatica (Na), and H. gomorrense (Hg) and TfbG from H. lacusprofundi show orthology with TfbF and TfbG of H. sp. NRC-1. Orthology was supported by the high bootstrap scores (numbers on the branch) generated by 1000 replicates. The results suggest similar structural and functional characteristics between TFB proteins among the halophiles.

Article Snippet: Haloarcula marismortui (ATCC#: 43049), Halobaculum gomorrense (ATCC#: 700876), Halorubrum lacusprofundi (ATCC#: 49239), and Natrialba asiatica (ATCC#: 700177) were cultured in ATCC media 1218, 2169, 1682, and 805, respectively, prepared according to the directions from ATCC.

Techniques: Generated, Functional Assay