cbs 333 75 atcc 28333 imi 386092 prem 44889  (ATCC)


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    ATCC cbs 333 75 atcc 28333 imi 386092 prem 44889
    Cbs 333 75 Atcc 28333 Imi 386092 Prem 44889, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    cbs 333 75 atcc 28333 imi 386092 prem 44889  (ATCC)


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    ATCC cbs 333 75 atcc 28333 imi 386092 prem 44889
    Cbs 333 75 Atcc 28333 Imi 386092 Prem 44889, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    allomyces macrogynus  (ATCC)


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    ATCC allomyces macrogynus
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    allomyces macrogynus  (ATCC)


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    ATCC allomyces macrogynus
    (A) This cladogram shows the relationships between representative genera of major eukaryotic groups. Chytrids are represented by Batrachochytrium , Spizellomyces , Rhizoclosmatium , and <t>Allomyces</t> (magenta), diverging before the diversification of Dikarya (orange), and are in a sister clade to animals (cyan). Genera that are bolded were used for the majority of the homologous sequence analyses in this paper. (B) In vitro life cycle of Batrachochytrium dendrobatidis (Bd) . Bd has a motile stage known as a zoospore (i) with a flagellum made of microtubules (magenta), no cell wall, and can crawl using actin (green) based protrusions. Zoospores encyst and build a cell wall (cyan), this stage is referred to as a germling (ii). The germling grows in size, becoming a sporangium. Sporangia develop hyphal-like structures called rhizoids used for nutrient uptake and undergo synchronous rounds of mitosis (iii-iv) before cellularization and release of the next generation of zoospores (v). This life cycle takes approximately three days in laboratory culture conditions. (C) Representative examples of zoospores (DIC: grey) and the phalloidin stained actin structures at this stage (inverted, black), with an overlay of the two (actin, green). Actin structures in Bd zoospores are: actin-filled pseudopods (P), actin-filled spikes (S), cortical actin (Co), and actin patches (Pa). Graphs on the right indicate the raw percent of cells with the phenotype in 3 independent experiments, shapes here match the shapes for the replicates in . (D) Representative examples of Bd sporangia (DIC: grey) and the phalloidin stained actin structures at this stage (inverted, black; both a max intensity z projection and a single slice, with an overlay of the DIC and fluorescence (actin, green). Actin structures in sporangia are: actin patches (Pa), and perinuclear actin shells (Ps).
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    1) Product Images from "The actin networks of chytrid fungi reveal evolutionary loss of cytoskeletal complexity in the fungal kingdom"

    Article Title: The actin networks of chytrid fungi reveal evolutionary loss of cytoskeletal complexity in the fungal kingdom

    Journal: bioRxiv

    doi: 10.1101/2020.06.12.142943

    (A) This cladogram shows the relationships between representative genera of major eukaryotic groups. Chytrids are represented by Batrachochytrium , Spizellomyces , Rhizoclosmatium , and Allomyces (magenta), diverging before the diversification of Dikarya (orange), and are in a sister clade to animals (cyan). Genera that are bolded were used for the majority of the homologous sequence analyses in this paper. (B) In vitro life cycle of Batrachochytrium dendrobatidis (Bd) . Bd has a motile stage known as a zoospore (i) with a flagellum made of microtubules (magenta), no cell wall, and can crawl using actin (green) based protrusions. Zoospores encyst and build a cell wall (cyan), this stage is referred to as a germling (ii). The germling grows in size, becoming a sporangium. Sporangia develop hyphal-like structures called rhizoids used for nutrient uptake and undergo synchronous rounds of mitosis (iii-iv) before cellularization and release of the next generation of zoospores (v). This life cycle takes approximately three days in laboratory culture conditions. (C) Representative examples of zoospores (DIC: grey) and the phalloidin stained actin structures at this stage (inverted, black), with an overlay of the two (actin, green). Actin structures in Bd zoospores are: actin-filled pseudopods (P), actin-filled spikes (S), cortical actin (Co), and actin patches (Pa). Graphs on the right indicate the raw percent of cells with the phenotype in 3 independent experiments, shapes here match the shapes for the replicates in . (D) Representative examples of Bd sporangia (DIC: grey) and the phalloidin stained actin structures at this stage (inverted, black; both a max intensity z projection and a single slice, with an overlay of the DIC and fluorescence (actin, green). Actin structures in sporangia are: actin patches (Pa), and perinuclear actin shells (Ps).
    Figure Legend Snippet: (A) This cladogram shows the relationships between representative genera of major eukaryotic groups. Chytrids are represented by Batrachochytrium , Spizellomyces , Rhizoclosmatium , and Allomyces (magenta), diverging before the diversification of Dikarya (orange), and are in a sister clade to animals (cyan). Genera that are bolded were used for the majority of the homologous sequence analyses in this paper. (B) In vitro life cycle of Batrachochytrium dendrobatidis (Bd) . Bd has a motile stage known as a zoospore (i) with a flagellum made of microtubules (magenta), no cell wall, and can crawl using actin (green) based protrusions. Zoospores encyst and build a cell wall (cyan), this stage is referred to as a germling (ii). The germling grows in size, becoming a sporangium. Sporangia develop hyphal-like structures called rhizoids used for nutrient uptake and undergo synchronous rounds of mitosis (iii-iv) before cellularization and release of the next generation of zoospores (v). This life cycle takes approximately three days in laboratory culture conditions. (C) Representative examples of zoospores (DIC: grey) and the phalloidin stained actin structures at this stage (inverted, black), with an overlay of the two (actin, green). Actin structures in Bd zoospores are: actin-filled pseudopods (P), actin-filled spikes (S), cortical actin (Co), and actin patches (Pa). Graphs on the right indicate the raw percent of cells with the phenotype in 3 independent experiments, shapes here match the shapes for the replicates in . (D) Representative examples of Bd sporangia (DIC: grey) and the phalloidin stained actin structures at this stage (inverted, black; both a max intensity z projection and a single slice, with an overlay of the DIC and fluorescence (actin, green). Actin structures in sporangia are: actin patches (Pa), and perinuclear actin shells (Ps).

    Techniques Used: Sequencing, In Vitro, Staining, Fluorescence

    The distribution of actin regulatory proteins across taxa. Color-filled circles indicate the presence of clear homologs found, with the number of homologs for each protein in each species shown in the colors specified in the key. Unfilled circles indicate that no homolog was detected in that species. Circles with multiple colors indicate complexes with different copy numbers for multiple complex members. Circles for Capping Protein represent the copy number for both α and β subunits. Dashed lines mark the chytrids. Symbols on the tree represent: opisthokonts (triangle); fungi (square); chytridiomycota (circle). Symbols in the circles represent: V, copy number of WASH varies individually, as many WASH genes are subtelomeric . O, Arabidopsis has 5 villin-like genes and an additional gelsolin-domain containing protein, none of which are phylogenetically related to metazoan gelsolin/villin family members (Ghoshdastider et al. 2013). +, See Supplemental Table 1 for details and additional potential homologs with caveates. At, Arabidopsis thaliana; Dd, Dictyostelium discoideum; Hs, Homo sapiens; Bd, Batrachochytrium dendrobatidis; Bs, Batrachochytrium salamandrivorans; Sp, Spizellomyces punctatus; Rg, Rhizoclosmatium globosum; Am, Allomyces macrogynus; Sc, Saccharomyces cerevisiae; Spo, Schizosaccharomyces pombe .
    Figure Legend Snippet: The distribution of actin regulatory proteins across taxa. Color-filled circles indicate the presence of clear homologs found, with the number of homologs for each protein in each species shown in the colors specified in the key. Unfilled circles indicate that no homolog was detected in that species. Circles with multiple colors indicate complexes with different copy numbers for multiple complex members. Circles for Capping Protein represent the copy number for both α and β subunits. Dashed lines mark the chytrids. Symbols on the tree represent: opisthokonts (triangle); fungi (square); chytridiomycota (circle). Symbols in the circles represent: V, copy number of WASH varies individually, as many WASH genes are subtelomeric . O, Arabidopsis has 5 villin-like genes and an additional gelsolin-domain containing protein, none of which are phylogenetically related to metazoan gelsolin/villin family members (Ghoshdastider et al. 2013). +, See Supplemental Table 1 for details and additional potential homologs with caveates. At, Arabidopsis thaliana; Dd, Dictyostelium discoideum; Hs, Homo sapiens; Bd, Batrachochytrium dendrobatidis; Bs, Batrachochytrium salamandrivorans; Sp, Spizellomyces punctatus; Rg, Rhizoclosmatium globosum; Am, Allomyces macrogynus; Sc, Saccharomyces cerevisiae; Spo, Schizosaccharomyces pombe .

    Techniques Used:

    All chytrid sequences sharing ≥50% similarity with Rabbit, Dictyostelium discoideum , Saccharomyces cerevisiae , or Schizosaccharomyces pombe actin sequences were obtained using BLAST and aligned with known actin, Arp1, Arp2, and Arp3 sequences from various taxa. (A) Percent similarities between the actin sequences of the given species. (B) Maximum likelihood phylogeny built to determine which chytrid sequences were true actin sequences. Consensus tree shown, branches with less than 70% bootstrap value were collapsed to polytomies. All bootstrap values shown. True chytrid actin sequences were determined as those that grouped with known actin sequences from other organisms. Rabbit/ Oc , Oryctolagus cuniculus , HUMAN, Homo sapiens, Dd, Dictyostelium discoideum; Bd, Batrachochytrium dendrobatidis (JAM81 and JEL423 strains); Bs, Batrachochytrium salamandrivorans; Sp, Spizellomyces punctatus; Rg, Rhizoclosmatium globosum; Am, Allomyces macrogynus; Sc, Saccharomyces cerevisiae; Spo, Schizosaccharomyces pombe; CHLRE, Chlamydomonas reinhardtii; GIAIN, Giardia intestinalis .
    Figure Legend Snippet: All chytrid sequences sharing ≥50% similarity with Rabbit, Dictyostelium discoideum , Saccharomyces cerevisiae , or Schizosaccharomyces pombe actin sequences were obtained using BLAST and aligned with known actin, Arp1, Arp2, and Arp3 sequences from various taxa. (A) Percent similarities between the actin sequences of the given species. (B) Maximum likelihood phylogeny built to determine which chytrid sequences were true actin sequences. Consensus tree shown, branches with less than 70% bootstrap value were collapsed to polytomies. All bootstrap values shown. True chytrid actin sequences were determined as those that grouped with known actin sequences from other organisms. Rabbit/ Oc , Oryctolagus cuniculus , HUMAN, Homo sapiens, Dd, Dictyostelium discoideum; Bd, Batrachochytrium dendrobatidis (JAM81 and JEL423 strains); Bs, Batrachochytrium salamandrivorans; Sp, Spizellomyces punctatus; Rg, Rhizoclosmatium globosum; Am, Allomyces macrogynus; Sc, Saccharomyces cerevisiae; Spo, Schizosaccharomyces pombe; CHLRE, Chlamydomonas reinhardtii; GIAIN, Giardia intestinalis .

    Techniques Used:

    The distribution of the Arp2/3 complex and its regulators across taxa. Color-filled circles indicate the presence of clear homologs found, with the number of homologs for each protein in each species shown in the colors specified in the key, whereas white dots indicate that no homolog was detected in that species. Dashed lines mark the chytrids. Symbols on the tree represent: opisthokonts (triangle); fungi (square); chytridiomycota (circle). V, copy number of WASH varies individually, as many WASH genes are subtelomeric . +, See Supplemental Table 1 for details and additional potential homologs with caveates. At, Arabidopsis thaliana; Dd, Dictyostelium discoideum; Hs, Homo sapiens; Bd, Batrachochytrium dendrobatidis; Bs, Batrachochytrium salamandrivorans; Sp, Spizellomyces punctatus; Rg, Rhizoclosmatium globosum; Am, Allomyces macrogynus; Sc, Saccharomyces cerevisiae; Spo, Schizosaccharomyces pombe .
    Figure Legend Snippet: The distribution of the Arp2/3 complex and its regulators across taxa. Color-filled circles indicate the presence of clear homologs found, with the number of homologs for each protein in each species shown in the colors specified in the key, whereas white dots indicate that no homolog was detected in that species. Dashed lines mark the chytrids. Symbols on the tree represent: opisthokonts (triangle); fungi (square); chytridiomycota (circle). V, copy number of WASH varies individually, as many WASH genes are subtelomeric . +, See Supplemental Table 1 for details and additional potential homologs with caveates. At, Arabidopsis thaliana; Dd, Dictyostelium discoideum; Hs, Homo sapiens; Bd, Batrachochytrium dendrobatidis; Bs, Batrachochytrium salamandrivorans; Sp, Spizellomyces punctatus; Rg, Rhizoclosmatium globosum; Am, Allomyces macrogynus; Sc, Saccharomyces cerevisiae; Spo, Schizosaccharomyces pombe .

    Techniques Used:

    The distribution of given myosins (left, not to scale), across taxa (right). Color-filled circles indicate the presence of at least one myosin of that class in that species, with color indicating the number of myosins. Unfilled circles indicate that no myosin of that class was found in the given species. The domain abbreviations are as follows: yellow box, light chain binding domains (IQ motifs) that can vary in number; blue rectangles, MyTH4 domain; red circles, FERM domain; light blue oval, PH domain; black bars, transmembrane domain; membr binding, membrane binding; GPA, glycine-proline-alanine rich; SH3, src homology 3 (purple rectangle); S/T kinase, serine-threonine kinase; THDI/II, tail homology domain I/II; 3-Helix, triple helix bundle; SAH, single alpha-helix; NTE, N-terminal extension; PBM, PDZ binding motif; ANK, ankyrin repeats; NYAP, Neuronal tYrosine-phosphorylated Adaptor for the PI 3-kinase domain; b5, cytochrome heme binding domain; Chit syn 2, chitin synthase 2; KE, lysine and glutamate rich; PDZ, PDZ domain; DH, Dbl homology domain. At, Arabidopsis thaliana; Dd, Dictyostelium discoideum; Hs, Homo sapiens (non-muscle myosins only depicted) ; Bd, Batrachochytrium dendrobatidis; Bs, Batrachochytrium salamandrivorans; Sp, Spizellomyces punctatus; Rg, Rhizoclosmatium globosum; Am, Allomyces macrogynus; Sc, Saccharomyces cerevisiae; Spo, Schizosaccharomyces pombe .
    Figure Legend Snippet: The distribution of given myosins (left, not to scale), across taxa (right). Color-filled circles indicate the presence of at least one myosin of that class in that species, with color indicating the number of myosins. Unfilled circles indicate that no myosin of that class was found in the given species. The domain abbreviations are as follows: yellow box, light chain binding domains (IQ motifs) that can vary in number; blue rectangles, MyTH4 domain; red circles, FERM domain; light blue oval, PH domain; black bars, transmembrane domain; membr binding, membrane binding; GPA, glycine-proline-alanine rich; SH3, src homology 3 (purple rectangle); S/T kinase, serine-threonine kinase; THDI/II, tail homology domain I/II; 3-Helix, triple helix bundle; SAH, single alpha-helix; NTE, N-terminal extension; PBM, PDZ binding motif; ANK, ankyrin repeats; NYAP, Neuronal tYrosine-phosphorylated Adaptor for the PI 3-kinase domain; b5, cytochrome heme binding domain; Chit syn 2, chitin synthase 2; KE, lysine and glutamate rich; PDZ, PDZ domain; DH, Dbl homology domain. At, Arabidopsis thaliana; Dd, Dictyostelium discoideum; Hs, Homo sapiens (non-muscle myosins only depicted) ; Bd, Batrachochytrium dendrobatidis; Bs, Batrachochytrium salamandrivorans; Sp, Spizellomyces punctatus; Rg, Rhizoclosmatium globosum; Am, Allomyces macrogynus; Sc, Saccharomyces cerevisiae; Spo, Schizosaccharomyces pombe .

    Techniques Used: Binding Assay

    The distribution of given formin domain architectures (left, not to scale), across taxa (right). Each domain architecture is assigned a letter (middle) which is mapped onto ; yellow letters (A-F) indicate diaphanous-like architectures, white letters (M,N) indicate PTEN-domain-containing architectures (both plant and non-plant formins), black letters indicate architectures which did not fall into either of these classes. Color-filled circles (right) indicate the presence of at least one formin with the given domain architecture in that species, with color indicating the number of formins. Unfilled circles indicate that no formin with the indicated domain architecture was found in the given species. Symbols on the tree represent: opisthokonts (triangle); fungi (square); chytridiomycota (circle). Symbols in the circles represent: *, for at least one formin sequence in the indicated species, the DAD domain does not perfectly fit the consensus motif, but could potentially function as an autoregulatory domain. -, for at least one formin sequence, little to no sequence is present after the FH2 domain. #, although no region of this protein met the formal definition of an FH1 domain, a proline rich region (4 polyproline stretches: 8 prolines/14 amino acids; 4/5; 4/6; and 7/11; total of 22 prolines over 197 amino acids) is found N-terminal to the FH2 domain in this protein (Genbank: ORY46833.1). ^, Dictyostelium formin ForC has no polyproline stretches and therefore no FH1 domain. At, Arabidopsis thaliana; Dd, Dictyostelium discoideum; Hs, Homo sapiens; Bd, Batrachochytrium dendrobatidis; Bs, Batrachochytrium salamandrivorans; Sp, Spizellomyces punctatus; Rg, Rhizoclosmatium globosum; Am, Allomyces macrogynus; Sc, Saccharomyces cerevisiae; Spo, Schizosaccharomyces pombe .
    Figure Legend Snippet: The distribution of given formin domain architectures (left, not to scale), across taxa (right). Each domain architecture is assigned a letter (middle) which is mapped onto ; yellow letters (A-F) indicate diaphanous-like architectures, white letters (M,N) indicate PTEN-domain-containing architectures (both plant and non-plant formins), black letters indicate architectures which did not fall into either of these classes. Color-filled circles (right) indicate the presence of at least one formin with the given domain architecture in that species, with color indicating the number of formins. Unfilled circles indicate that no formin with the indicated domain architecture was found in the given species. Symbols on the tree represent: opisthokonts (triangle); fungi (square); chytridiomycota (circle). Symbols in the circles represent: *, for at least one formin sequence in the indicated species, the DAD domain does not perfectly fit the consensus motif, but could potentially function as an autoregulatory domain. -, for at least one formin sequence, little to no sequence is present after the FH2 domain. #, although no region of this protein met the formal definition of an FH1 domain, a proline rich region (4 polyproline stretches: 8 prolines/14 amino acids; 4/5; 4/6; and 7/11; total of 22 prolines over 197 amino acids) is found N-terminal to the FH2 domain in this protein (Genbank: ORY46833.1). ^, Dictyostelium formin ForC has no polyproline stretches and therefore no FH1 domain. At, Arabidopsis thaliana; Dd, Dictyostelium discoideum; Hs, Homo sapiens; Bd, Batrachochytrium dendrobatidis; Bs, Batrachochytrium salamandrivorans; Sp, Spizellomyces punctatus; Rg, Rhizoclosmatium globosum; Am, Allomyces macrogynus; Sc, Saccharomyces cerevisiae; Spo, Schizosaccharomyces pombe .

    Techniques Used: Sequencing

    (A) The evolutionary history of 284 FH2 domain sequences from formin homologs was inferred by the maximum likelihood method for 350 amino acid positions in ≥80% of the sequences. This tree is the same as the tree in , but includes the FH2 domains from the formins of three additional chytrid species that have been observed to assemble actin cables [ Neocallimastix patriciarum , Orpinomyces joyonii , and Chytriomyces hyalinus ]. Consensus tree shown, pruned to highlight clade 2 (the main fungal clade) from . Nodes with <70% bootstrap support were collapsed to polytomies. All bootstrap values are shown. (B) Representative examples of Spizellomyces punctatus (Sp) sporangia seeded 1-day prior and Batrachochytrium salamandrivorans (Bs) sporangia seeded 3-days prior to being fixed and stained for polymerized actin (alone inverted, black; overlay, green) and for DNA with DAPI (blue). Sp sporangia have actin patches (Pa), transient perinuclear actin shells (Ps), and actin cables (Ca). Bs sporangia have actin patches and perinuclear actin shells, but no actin cables. (C) Distribution of actin cables and bni1 -type formins across fungi. Color-filled dots indicate the presence of the given component in the given species. Symbols on the tree represent: fungi (square); Dikarya (pentagon); chytridiomycota (circle). ? indicates the presence of cables in this species is unknown in the literature. * indicates a finding from this paper. Neo/Neosp1, Neocallimastix patriciarum; Orp/Orpsp1, Orpinomyces joyonii; Bd/BDEND, Batrachochytrium dendrobatidis; Bs/BSALA, Batrachochytrium salamandrivorans; Sp/SPUNC, Spizellomyces punctatus; Rg/RGLOB, Rhizoclosmatium globosum; Ch/Chyhya1, Chytriomyces hyalinus; Am/AMACR, Allomyces macrogynus; Pb/PBLAK, Phycomyces blakesleeanus; Um/UMAYD, Ustilago maydis; Cn/CNEOF, Cryptococcus neoformans; An/ENIDU, Aspergillus nidulans; Sc/SCERE, Saccharomyces cerevisiae; Spo/SPOMB, Schizosaccharomyces pombe .
    Figure Legend Snippet: (A) The evolutionary history of 284 FH2 domain sequences from formin homologs was inferred by the maximum likelihood method for 350 amino acid positions in ≥80% of the sequences. This tree is the same as the tree in , but includes the FH2 domains from the formins of three additional chytrid species that have been observed to assemble actin cables [ Neocallimastix patriciarum , Orpinomyces joyonii , and Chytriomyces hyalinus ]. Consensus tree shown, pruned to highlight clade 2 (the main fungal clade) from . Nodes with <70% bootstrap support were collapsed to polytomies. All bootstrap values are shown. (B) Representative examples of Spizellomyces punctatus (Sp) sporangia seeded 1-day prior and Batrachochytrium salamandrivorans (Bs) sporangia seeded 3-days prior to being fixed and stained for polymerized actin (alone inverted, black; overlay, green) and for DNA with DAPI (blue). Sp sporangia have actin patches (Pa), transient perinuclear actin shells (Ps), and actin cables (Ca). Bs sporangia have actin patches and perinuclear actin shells, but no actin cables. (C) Distribution of actin cables and bni1 -type formins across fungi. Color-filled dots indicate the presence of the given component in the given species. Symbols on the tree represent: fungi (square); Dikarya (pentagon); chytridiomycota (circle). ? indicates the presence of cables in this species is unknown in the literature. * indicates a finding from this paper. Neo/Neosp1, Neocallimastix patriciarum; Orp/Orpsp1, Orpinomyces joyonii; Bd/BDEND, Batrachochytrium dendrobatidis; Bs/BSALA, Batrachochytrium salamandrivorans; Sp/SPUNC, Spizellomyces punctatus; Rg/RGLOB, Rhizoclosmatium globosum; Ch/Chyhya1, Chytriomyces hyalinus; Am/AMACR, Allomyces macrogynus; Pb/PBLAK, Phycomyces blakesleeanus; Um/UMAYD, Ustilago maydis; Cn/CNEOF, Cryptococcus neoformans; An/ENIDU, Aspergillus nidulans; Sc/SCERE, Saccharomyces cerevisiae; Spo/SPOMB, Schizosaccharomyces pombe .

    Techniques Used: Staining

    prem 44889  (ATCC)


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    ATCC prem 44889
    Isolates used in this study and their GenBank accession numbers. New taxa and new combinations introduced in the present study and newly generated sequences are indicated in bold .
    Prem 44889, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Images

    1) Product Images from "Didymellaceae revisited"

    Article Title: Didymellaceae revisited

    Journal: Studies in Mycology

    doi: 10.1016/j.simyco.2017.06.002

    Isolates used in this study and their GenBank accession numbers. New taxa and new combinations introduced in the present study and newly generated sequences are indicated in bold .
    Figure Legend Snippet: Isolates used in this study and their GenBank accession numbers. New taxa and new combinations introduced in the present study and newly generated sequences are indicated in bold .

    Techniques Used: Generated

    allomyces macrogynus  (ATCC)


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    ATCC allomyces macrogynus
    Early diverging fungi whose genomes were examined in this study
    Allomyces Macrogynus, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "The Identification of Phytohormone Receptor Homologs in Early Diverging Fungi Suggests a Role for Plant Sensing in Land Colonization by Fungi"

    Article Title: The Identification of Phytohormone Receptor Homologs in Early Diverging Fungi Suggests a Role for Plant Sensing in Land Colonization by Fungi

    Journal: mBio

    doi: 10.1128/mBio.01739-16

    Early diverging fungi whose genomes were examined in this study
    Figure Legend Snippet: Early diverging fungi whose genomes were examined in this study

    Techniques Used:

    Phylogeny estimation of HHK predicted protein sequences. Methods used to carry out this phylogenetic analysis are provided in <xref ref-type=Text S1 in the supplemental material. Early diverging fungi predicted HHK sequences were categorized following sequence analysis of both HisKA signatures and N-terminal sensing domains according to previous classifications ( , ). Abbreviations: Ri, Rhizophagus irregularis ( Glomeromycotina ); Me, Mortierella elongata ( Mortierellomycotina ); Ur, Umbelopsis ramanniana ( Mucoromycotina ); Cc, Conidiobolus coronatus ( Entomophthoromycotina ); Rb, Ramicandelaber brevisporus ( Kickxellomycotina ); Ca, Catenaria anguillulae ( Blastocladiomycota ); Gp, Gonapodya prolifera ( Chytridiomycota ); Ra, Rozella allomycis ( Cryptomycota ); AMAG, Allomyces macrogynus ( Blastocladiomycota ); Dd, Dictyostelium discoideum (Amoebae); SPPG, Spizellomyces punctatus ( Chytridiomycota ); Bm, Basidiobolus meristoporus ( Entomophthoromycotina ); Gr, Gigaspora rosea ( Glomeromycotina ); At, Arabidopsis thaliana (dicots); Zm, Zea mays (monocots); Pa, Picea abies (gymnosperms); Sm, Selaginella moellendorffii (lycophytes); Pp, Physcomitrella patens (bryophytes); Mp, Marchantia polymorpha (liverworts); Kf, Klebsormidium flaccidum (charophytes). " title="... ); Ra, Rozella allomycis ( Cryptomycota ); AMAG, Allomyces macrogynus ( Blastocladiomycota ); Dd, Dictyostelium discoideum (Amoebae); ..." property="contentUrl" width="100%" height="100%"/>
    Figure Legend Snippet: Phylogeny estimation of HHK predicted protein sequences. Methods used to carry out this phylogenetic analysis are provided in Text S1 in the supplemental material. Early diverging fungi predicted HHK sequences were categorized following sequence analysis of both HisKA signatures and N-terminal sensing domains according to previous classifications ( , ). Abbreviations: Ri, Rhizophagus irregularis ( Glomeromycotina ); Me, Mortierella elongata ( Mortierellomycotina ); Ur, Umbelopsis ramanniana ( Mucoromycotina ); Cc, Conidiobolus coronatus ( Entomophthoromycotina ); Rb, Ramicandelaber brevisporus ( Kickxellomycotina ); Ca, Catenaria anguillulae ( Blastocladiomycota ); Gp, Gonapodya prolifera ( Chytridiomycota ); Ra, Rozella allomycis ( Cryptomycota ); AMAG, Allomyces macrogynus ( Blastocladiomycota ); Dd, Dictyostelium discoideum (Amoebae); SPPG, Spizellomyces punctatus ( Chytridiomycota ); Bm, Basidiobolus meristoporus ( Entomophthoromycotina ); Gr, Gigaspora rosea ( Glomeromycotina ); At, Arabidopsis thaliana (dicots); Zm, Zea mays (monocots); Pa, Picea abies (gymnosperms); Sm, Selaginella moellendorffii (lycophytes); Pp, Physcomitrella patens (bryophytes); Mp, Marchantia polymorpha (liverworts); Kf, Klebsormidium flaccidum (charophytes).

    Techniques Used: Sequencing

    prem 44889  (ATCC)


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    ATCC prem 44889
    Isolates used in this study and their GenBank accession numbers. Newly generated sequences are indicated in bold .
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    Article Title: Resolving the Phoma enigma

    Journal: Studies in Mycology

    doi: 10.1016/j.simyco.2015.10.003

    Isolates used in this study and their GenBank accession numbers. Newly generated sequences are indicated in bold .
    Figure Legend Snippet: Isolates used in this study and their GenBank accession numbers. Newly generated sequences are indicated in bold .

    Techniques Used: Generated

    allomyces macrogynus  (ATCC)


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    ATCC allomyces macrogynus
    Fungal species, isolate number, and source, amplified with specific primer combinations.
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    Article Title: Examining new phylogenetic markers to uncover the evolutionary history of early-diverging fungi: comparing MCM7, TSR1 and rRNA genes for single- and multi-gene analyses of the Kickxellomycotina

    Journal: Persoonia : Molecular Phylogeny and Evolution of Fungi

    doi: 10.3767/003158513X666394

    Fungal species, isolate number, and source, amplified with specific primer combinations.
    Figure Legend Snippet: Fungal species, isolate number, and source, amplified with specific primer combinations.

    Techniques Used: Amplification, Sequencing

    dsm 44889  (ATCC)


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    q granulorum dsm 44889t  (ATCC)


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    ag019  (ATCC)


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    ATCC cbs 333 75 atcc 28333 imi 386092 prem 44889
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    ATCC dsm 44889
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    ag019  (ATCC)
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    Isolates used in this study and their GenBank accession numbers. New taxa and new combinations introduced in the present study and newly generated sequences are indicated in bold .

    Journal: Studies in Mycology

    Article Title: Didymellaceae revisited

    doi: 10.1016/j.simyco.2017.06.002

    Figure Lengend Snippet: Isolates used in this study and their GenBank accession numbers. New taxa and new combinations introduced in the present study and newly generated sequences are indicated in bold .

    Article Snippet: D. arachidicola , CBS 333.75; ATCC 28333; IMI 386092; PREM 44889 , T , Arachis hypogaea , Fabeceae , South Africa , GU237996 , GU237833 , KT389598 , GU237554.

    Techniques: Generated