rhodonia placenta mad 698 r  (ATCC)


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    ATCC rhodonia placenta mad 698 r
    Rhodonia Placenta Mad 698 R, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    rhodonia placenta mad 698 r  (ATCC)


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    ATCC rhodonia placenta mad 698 r
    Rhodonia Placenta Mad 698 R, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    rhodonia placenta  (ATCC)


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    ATCC rhodonia placenta
    Using space to parse time at a micrometer scale. Wood wafers colonized directionally by the brown rot fungus <t>Rhodonia</t> placenta were cryosectioned to a 100-μm thickness at the hyphal front and closely behind in order to map gene expression patterns using whole transcriptomic RNA (RNA-seq). Differentially expressed genes (DEGs) with a >4-fold difference (0 to 100 μm versus 4,900 to 5,000 μm) were grouped as being downregulated after high levels near the extreme front (which we label incipient) or upregulated after a delay (delayed). An additional section was included as a reference for later decay, as shown in .
    Rhodonia Placenta, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Capturing an Early Gene Induction Event during Wood Decay by the Brown Rot Fungus Rhodonia placenta"

    Article Title: Capturing an Early Gene Induction Event during Wood Decay by the Brown Rot Fungus Rhodonia placenta

    Journal: Applied and Environmental Microbiology

    doi: 10.1128/aem.00188-22

    Using space to parse time at a micrometer scale. Wood wafers colonized directionally by the brown rot fungus Rhodonia placenta were cryosectioned to a 100-μm thickness at the hyphal front and closely behind in order to map gene expression patterns using whole transcriptomic RNA (RNA-seq). Differentially expressed genes (DEGs) with a >4-fold difference (0 to 100 μm versus 4,900 to 5,000 μm) were grouped as being downregulated after high levels near the extreme front (which we label incipient) or upregulated after a delay (delayed). An additional section was included as a reference for later decay, as shown in .
    Figure Legend Snippet: Using space to parse time at a micrometer scale. Wood wafers colonized directionally by the brown rot fungus Rhodonia placenta were cryosectioned to a 100-μm thickness at the hyphal front and closely behind in order to map gene expression patterns using whole transcriptomic RNA (RNA-seq). Differentially expressed genes (DEGs) with a >4-fold difference (0 to 100 μm versus 4,900 to 5,000 μm) were grouped as being downregulated after high levels near the extreme front (which we label incipient) or upregulated after a delay (delayed). An additional section was included as a reference for later decay, as shown in .

    Techniques Used: Expressing, RNA Sequencing Assay

    rhodonia placenta mad 698 r  (ATCC)


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    ATCC rhodonia placenta mad 698 r
    Rhodonia Placenta Mad 698 R, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    brown rot species rhodonia placenta mad 698r  (ATCC)


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    ATCC brown rot species rhodonia placenta mad 698r
    MALDI-FTICR-MS analysis of wood wafers decayed by <t>Rhodonia</t> placenta , showing the temporal changes of LMW metabolites . ( A ) The longitudinal section parallel with fungal growth direction and four cross-section slices at different distances from the hyphal front (−20, 0, 20, 40 mm) were sampled using a pair of blades to track the metabolites from early to late decay stages. ( B ) The generated slices with thickness of 0.5 mm were then mounted onto a target plate for MALDI-FTICR-MS analyses. ( C ) PCA plot of MS data over five bioreplicates was used to show the metabolite distributions across different stages of brown rot. Each dot represents one spectrum (pixel) from the analyzed slice. ( D ) MALDI-FTICR-MS images of one representative ion 167.07015 m/z ± 2 mDa are shown as an example, to delineate the temporal changes of metabolites along with brown rot. The specific intensities of this ion in five replicates were shown in .
    Brown Rot Species Rhodonia Placenta Mad 698r, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Using MALDI-FTICR-MS Imaging to Track Low-Molecular-Weight Aromatic Derivatives of Fungal Decayed Wood"

    Article Title: Using MALDI-FTICR-MS Imaging to Track Low-Molecular-Weight Aromatic Derivatives of Fungal Decayed Wood

    Journal: Journal of Fungi

    doi: 10.3390/jof7080609

    MALDI-FTICR-MS analysis of wood wafers decayed by Rhodonia placenta , showing the temporal changes of LMW metabolites . ( A ) The longitudinal section parallel with fungal growth direction and four cross-section slices at different distances from the hyphal front (−20, 0, 20, 40 mm) were sampled using a pair of blades to track the metabolites from early to late decay stages. ( B ) The generated slices with thickness of 0.5 mm were then mounted onto a target plate for MALDI-FTICR-MS analyses. ( C ) PCA plot of MS data over five bioreplicates was used to show the metabolite distributions across different stages of brown rot. Each dot represents one spectrum (pixel) from the analyzed slice. ( D ) MALDI-FTICR-MS images of one representative ion 167.07015 m/z ± 2 mDa are shown as an example, to delineate the temporal changes of metabolites along with brown rot. The specific intensities of this ion in five replicates were shown in .
    Figure Legend Snippet: MALDI-FTICR-MS analysis of wood wafers decayed by Rhodonia placenta , showing the temporal changes of LMW metabolites . ( A ) The longitudinal section parallel with fungal growth direction and four cross-section slices at different distances from the hyphal front (−20, 0, 20, 40 mm) were sampled using a pair of blades to track the metabolites from early to late decay stages. ( B ) The generated slices with thickness of 0.5 mm were then mounted onto a target plate for MALDI-FTICR-MS analyses. ( C ) PCA plot of MS data over five bioreplicates was used to show the metabolite distributions across different stages of brown rot. Each dot represents one spectrum (pixel) from the analyzed slice. ( D ) MALDI-FTICR-MS images of one representative ion 167.07015 m/z ± 2 mDa are shown as an example, to delineate the temporal changes of metabolites along with brown rot. The specific intensities of this ion in five replicates were shown in .

    Techniques Used: Generated

    postia  (ATCC)


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    ATCC postia
    Postia, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    model fungus postia placenta mad698r  (ATCC)


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    ATCC model fungus postia placenta mad698r
    Model Fungus Postia Placenta Mad698r, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    postia placenta mad 698 r  (ATCC)


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    ATCC postia placenta mad 698 r
    Postia Placenta Mad 698 R, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    postia placenta mad 698 r  (ATCC)


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    ATCC postia placenta mad 698 r
    Postia Placenta Mad 698 R, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    postia placenta strain mad 698  (ATCC)


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    ATCC postia placenta strain mad 698
    Postia Placenta Strain Mad 698, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    postia placenta dikaryotic strain mad 698r  (ATCC)


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    ATCC postia placenta dikaryotic strain mad 698r
    Postia Placenta Dikaryotic Strain Mad 698r, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC rhodonia placenta mad 698 r
    Rhodonia Placenta Mad 698 R, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC rhodonia placenta
    Using space to parse time at a micrometer scale. Wood wafers colonized directionally by the brown rot fungus <t>Rhodonia</t> placenta were cryosectioned to a 100-μm thickness at the hyphal front and closely behind in order to map gene expression patterns using whole transcriptomic RNA (RNA-seq). Differentially expressed genes (DEGs) with a >4-fold difference (0 to 100 μm versus 4,900 to 5,000 μm) were grouped as being downregulated after high levels near the extreme front (which we label incipient) or upregulated after a delay (delayed). An additional section was included as a reference for later decay, as shown in .
    Rhodonia Placenta, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC brown rot species rhodonia placenta mad 698r
    MALDI-FTICR-MS analysis of wood wafers decayed by <t>Rhodonia</t> placenta , showing the temporal changes of LMW metabolites . ( A ) The longitudinal section parallel with fungal growth direction and four cross-section slices at different distances from the hyphal front (−20, 0, 20, 40 mm) were sampled using a pair of blades to track the metabolites from early to late decay stages. ( B ) The generated slices with thickness of 0.5 mm were then mounted onto a target plate for MALDI-FTICR-MS analyses. ( C ) PCA plot of MS data over five bioreplicates was used to show the metabolite distributions across different stages of brown rot. Each dot represents one spectrum (pixel) from the analyzed slice. ( D ) MALDI-FTICR-MS images of one representative ion 167.07015 m/z ± 2 mDa are shown as an example, to delineate the temporal changes of metabolites along with brown rot. The specific intensities of this ion in five replicates were shown in .
    Brown Rot Species Rhodonia Placenta Mad 698r, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    postia  (ATCC)
    92
    ATCC postia
    MALDI-FTICR-MS analysis of wood wafers decayed by <t>Rhodonia</t> placenta , showing the temporal changes of LMW metabolites . ( A ) The longitudinal section parallel with fungal growth direction and four cross-section slices at different distances from the hyphal front (−20, 0, 20, 40 mm) were sampled using a pair of blades to track the metabolites from early to late decay stages. ( B ) The generated slices with thickness of 0.5 mm were then mounted onto a target plate for MALDI-FTICR-MS analyses. ( C ) PCA plot of MS data over five bioreplicates was used to show the metabolite distributions across different stages of brown rot. Each dot represents one spectrum (pixel) from the analyzed slice. ( D ) MALDI-FTICR-MS images of one representative ion 167.07015 m/z ± 2 mDa are shown as an example, to delineate the temporal changes of metabolites along with brown rot. The specific intensities of this ion in five replicates were shown in .
    Postia, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC model fungus postia placenta mad698r
    MALDI-FTICR-MS analysis of wood wafers decayed by <t>Rhodonia</t> placenta , showing the temporal changes of LMW metabolites . ( A ) The longitudinal section parallel with fungal growth direction and four cross-section slices at different distances from the hyphal front (−20, 0, 20, 40 mm) were sampled using a pair of blades to track the metabolites from early to late decay stages. ( B ) The generated slices with thickness of 0.5 mm were then mounted onto a target plate for MALDI-FTICR-MS analyses. ( C ) PCA plot of MS data over five bioreplicates was used to show the metabolite distributions across different stages of brown rot. Each dot represents one spectrum (pixel) from the analyzed slice. ( D ) MALDI-FTICR-MS images of one representative ion 167.07015 m/z ± 2 mDa are shown as an example, to delineate the temporal changes of metabolites along with brown rot. The specific intensities of this ion in five replicates were shown in .
    Model Fungus Postia Placenta Mad698r, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC postia placenta mad 698 r
    MALDI-FTICR-MS analysis of wood wafers decayed by <t>Rhodonia</t> placenta , showing the temporal changes of LMW metabolites . ( A ) The longitudinal section parallel with fungal growth direction and four cross-section slices at different distances from the hyphal front (−20, 0, 20, 40 mm) were sampled using a pair of blades to track the metabolites from early to late decay stages. ( B ) The generated slices with thickness of 0.5 mm were then mounted onto a target plate for MALDI-FTICR-MS analyses. ( C ) PCA plot of MS data over five bioreplicates was used to show the metabolite distributions across different stages of brown rot. Each dot represents one spectrum (pixel) from the analyzed slice. ( D ) MALDI-FTICR-MS images of one representative ion 167.07015 m/z ± 2 mDa are shown as an example, to delineate the temporal changes of metabolites along with brown rot. The specific intensities of this ion in five replicates were shown in .
    Postia Placenta Mad 698 R, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC postia placenta strain mad 698
    MALDI-FTICR-MS analysis of wood wafers decayed by <t>Rhodonia</t> placenta , showing the temporal changes of LMW metabolites . ( A ) The longitudinal section parallel with fungal growth direction and four cross-section slices at different distances from the hyphal front (−20, 0, 20, 40 mm) were sampled using a pair of blades to track the metabolites from early to late decay stages. ( B ) The generated slices with thickness of 0.5 mm were then mounted onto a target plate for MALDI-FTICR-MS analyses. ( C ) PCA plot of MS data over five bioreplicates was used to show the metabolite distributions across different stages of brown rot. Each dot represents one spectrum (pixel) from the analyzed slice. ( D ) MALDI-FTICR-MS images of one representative ion 167.07015 m/z ± 2 mDa are shown as an example, to delineate the temporal changes of metabolites along with brown rot. The specific intensities of this ion in five replicates were shown in .
    Postia Placenta Strain Mad 698, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC postia placenta dikaryotic strain mad 698r
    MALDI-FTICR-MS analysis of wood wafers decayed by <t>Rhodonia</t> placenta , showing the temporal changes of LMW metabolites . ( A ) The longitudinal section parallel with fungal growth direction and four cross-section slices at different distances from the hyphal front (−20, 0, 20, 40 mm) were sampled using a pair of blades to track the metabolites from early to late decay stages. ( B ) The generated slices with thickness of 0.5 mm were then mounted onto a target plate for MALDI-FTICR-MS analyses. ( C ) PCA plot of MS data over five bioreplicates was used to show the metabolite distributions across different stages of brown rot. Each dot represents one spectrum (pixel) from the analyzed slice. ( D ) MALDI-FTICR-MS images of one representative ion 167.07015 m/z ± 2 mDa are shown as an example, to delineate the temporal changes of metabolites along with brown rot. The specific intensities of this ion in five replicates were shown in .
    Postia Placenta Dikaryotic Strain Mad 698r, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Using space to parse time at a micrometer scale. Wood wafers colonized directionally by the brown rot fungus Rhodonia placenta were cryosectioned to a 100-μm thickness at the hyphal front and closely behind in order to map gene expression patterns using whole transcriptomic RNA (RNA-seq). Differentially expressed genes (DEGs) with a >4-fold difference (0 to 100 μm versus 4,900 to 5,000 μm) were grouped as being downregulated after high levels near the extreme front (which we label incipient) or upregulated after a delay (delayed). An additional section was included as a reference for later decay, as shown in .

    Journal: Applied and Environmental Microbiology

    Article Title: Capturing an Early Gene Induction Event during Wood Decay by the Brown Rot Fungus Rhodonia placenta

    doi: 10.1128/aem.00188-22

    Figure Lengend Snippet: Using space to parse time at a micrometer scale. Wood wafers colonized directionally by the brown rot fungus Rhodonia placenta were cryosectioned to a 100-μm thickness at the hyphal front and closely behind in order to map gene expression patterns using whole transcriptomic RNA (RNA-seq). Differentially expressed genes (DEGs) with a >4-fold difference (0 to 100 μm versus 4,900 to 5,000 μm) were grouped as being downregulated after high levels near the extreme front (which we label incipient) or upregulated after a delay (delayed). An additional section was included as a reference for later decay, as shown in .

    Article Snippet: Using Rhodonia placenta (MAD698R; ATCC 44394) maintained on malt extract agar, modified soil-block microcosms (1:1:1 mixture of soil-peat-vermiculite, with a 50% moisture content) containing birch “feeder” strips were inoculated and incubated in the dark at 26°C with 70% relative humidity (RH) until a fungal mat was formed (approximately 2 weeks).

    Techniques: Expressing, RNA Sequencing Assay

    MALDI-FTICR-MS analysis of wood wafers decayed by Rhodonia placenta , showing the temporal changes of LMW metabolites . ( A ) The longitudinal section parallel with fungal growth direction and four cross-section slices at different distances from the hyphal front (−20, 0, 20, 40 mm) were sampled using a pair of blades to track the metabolites from early to late decay stages. ( B ) The generated slices with thickness of 0.5 mm were then mounted onto a target plate for MALDI-FTICR-MS analyses. ( C ) PCA plot of MS data over five bioreplicates was used to show the metabolite distributions across different stages of brown rot. Each dot represents one spectrum (pixel) from the analyzed slice. ( D ) MALDI-FTICR-MS images of one representative ion 167.07015 m/z ± 2 mDa are shown as an example, to delineate the temporal changes of metabolites along with brown rot. The specific intensities of this ion in five replicates were shown in .

    Journal: Journal of Fungi

    Article Title: Using MALDI-FTICR-MS Imaging to Track Low-Molecular-Weight Aromatic Derivatives of Fungal Decayed Wood

    doi: 10.3390/jof7080609

    Figure Lengend Snippet: MALDI-FTICR-MS analysis of wood wafers decayed by Rhodonia placenta , showing the temporal changes of LMW metabolites . ( A ) The longitudinal section parallel with fungal growth direction and four cross-section slices at different distances from the hyphal front (−20, 0, 20, 40 mm) were sampled using a pair of blades to track the metabolites from early to late decay stages. ( B ) The generated slices with thickness of 0.5 mm were then mounted onto a target plate for MALDI-FTICR-MS analyses. ( C ) PCA plot of MS data over five bioreplicates was used to show the metabolite distributions across different stages of brown rot. Each dot represents one spectrum (pixel) from the analyzed slice. ( D ) MALDI-FTICR-MS images of one representative ion 167.07015 m/z ± 2 mDa are shown as an example, to delineate the temporal changes of metabolites along with brown rot. The specific intensities of this ion in five replicates were shown in .

    Article Snippet: Brown rot species Rhodonia placenta MAD-698R (ATCC 44394; previously Postia placenta ) was maintained on malt extract (1.5%) agar (MEA) slant at 4 °C.

    Techniques: Generated