Journal: Genetics

Article Title: Development and Genetic Characterization of an Advanced Backcross-Nested Association Mapping (AB-NAM) Population of Wild × Cultivated Barley

doi: 10.1534/genetics.116.190736

Figure Lengend Snippet: Summary of marker-trait associations of maximum significance

Article Snippet: Plots shown are mapping results from all 761 individuals (not bootstrapped) with imputed sequence variants. table ft1 table-wrap mode="anchored" t5 caption a7 Trait Variant a Chrom b cM b MAF c −log( P ) d Effect e Freq f Glossy spike morex_contig_40051:2172_A/G g 1H 0.1 0.12 101.7 0.46 N/A Glossy sheath morex_contig_41718:9777_CG/C g 3H 96.6 0.02 Inf 0.50 N/A Black hull morex_contig_1573652:70_A/G 1H 116.5 0.01 Inf 0.51 N/A morex_contig_38907:1672_G/A g 1H 116.6 0.01 Inf 0.50 N/A morex_contig_53289:2443_G/A g 1H 116.8 0.01 Inf 0.50 N/A morex_contig_42987:7765_T/C g 1H 117.7 0.01 Inf 0.50 N/A morex_contig_5603:2020_T/C g 1H 117.8 0.01 Inf 0.50 N/A morex_contig_243581:952_C/G g 1H 118.1 0.01 Inf 0.50 N/A morex_contig_1576759:813_C/T g 1H 118.3 0.01 Inf 0.50 N/A morex_contig_5976:324_G/A g 1H 119.0 0.01 Inf 0.50 N/A morex_contig_39431:11917_G/A g 1H 119.4 0.01 Inf 0.50 N/A GPC morex_contig_43675:8617_T/C 1H 50.6 0.17 4.9 −0.14 0.13 morex_contig_47454:1292_C/T 1H 119.7 0.01 6.8 −0.37 0.95 morex_contig_44650:4992_C/T 3H 25.3 0.02 4.8 −0.18 0.17 morex_contig_41236:9829_G/A 3H 37.4 0.02 4.9 −0.10 0.06 morex_contig_99201:2611_C/T 4H 27.5 0.10 5.6 0.17 0.90 morex_contig_46131:3154_TA/T 4H 27.8 0.01 4.8 −0.05 0.08 morex_contig_47914:307_C/T 4H 43.5 0.02 4.9 0.36 0.09 morex_contig_246786:1453_AACGTACGC/A 4H 44.9 0.03 5.0 −0.20 0.59 morex_contig_156722:1830_G/A 4H 51.6 0.03 4.8 0.33 0.11 morex_contig_45564:4922_A/G 4H 52.2 0.07 4.5 −0.07 0.06 morex_contig_52783:3343_C/T 4H 63.4 0.02 4.5 −0.27 0.06 morex_contig_1575414:1899_A/G 4H 67.1 0.03 4.5 0.29 0.13 morex_contig_146580:705_T/A 4H 76.3 0.01 5.0 −0.30 0.56 morex_contig_42454:4904_G/A 4H 78.7 0.04 4.8 0.23 0.11 morex_contig_7108:5074_G/T g 6H 50.0 0.17 5.8 0.37 0.96 Open in a separate window All significant marker-trait associations can be found in File S1 .

Techniques: Marker, Variant Assay