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s marcescens subsp sakuensis kctc 42172 (ATCC)

Name: s marcescens subsp sakuensis kctc 42172
Brand: ATCC
Rating: 86 (1 reviews)

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ATCC s marcescens subsp sakuensis kctc 42172

S Marcescens Subsp Sakuensis Kctc 42172, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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s marcescens subsp sakuensis kctc 42172 - by Bioz Stars, 2024-12

86/100 stars

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1) Product Images from "Comparative Genome Study of Multidrug-resistant Serratia marcescens strain IU-BTGE-M-3 Isolated from a Diarrheal Patient Reveals Antibiotic Resistance Profile"

Article Title: Comparative Genome Study of Multidrug-resistant Serratia marcescens strain IU-BTGE-M-3 Isolated from a Diarrheal Patient Reveals Antibiotic Resistance Profile

Journal: bioRxiv

doi: 10.1101/2024.10.18.619060

Comparison of four reference genome with Serratia marcescens IU-BTGE-M_3

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Techniques Used: Comparison

Genome features and annotation statistics of S. marcescens IU-BTGE-M_3

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Techniques Used:

Average Nucleotide Identity (ANI) of S. marcescens IU-BTGE-M_3

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Techniques Used:

Digital DNA-DNA Hybridization (dDDH) of S. marcescens IU-BTGE-M_3

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Techniques Used: DNA-DNA Hybridization

Figure Legend Snippet: Five genomes alignment ( S. marcescens IU-BTGE-M_3, S. marcescens strain KS10 (CP027798.1), Serratia nematodiphila strain DH-S01 (CP038662.1) , S. marcescens LCT-SM213 (NZ_JH670250.1), and S. marcescens strain BWH-2 3 (CP020501.1) with MAUVE program. The figure presents the homologous regions, potential genomic rearrangements, and unique sequences within multiple aligned genomes. Each block, the software draws a similarity profile for the aligned region of the genome sequence. Completely white areas within the blocks indicate regions that were not aligned, possibly containing sequence elements specific to one genome. Colored blocks appear above and below the center line in each panel, representing regions of the genome sequence that align with parts of another genome.

Techniques Used: Blocking Assay, Software, Sequencing

Comparative study of closely related four whole genomes of Serratia species, including three Serratia marcescens ( S. marcescens strain KS10 (CP027798.1); S. marcescens strain BWH-23 (CP020501.1); S. marcescens LCT-SM213 (NZ_JH670250.1)] and two S. nematodiphila strains ( Serratia nematodiphila strain DH-S01 (CP038662.1); S. nematodiphila DSM 21420 (JPUX01000001.1)

Figure Legend Snippet: Comparative study of closely related four whole genomes of Serratia species, including three Serratia marcescens ( S. marcescens strain KS10 (CP027798.1); S. marcescens strain BWH-23 (CP020501.1); S. marcescens LCT-SM213 (NZ_JH670250.1)] and two S. nematodiphila strains ( Serratia nematodiphila strain DH-S01 (CP038662.1); S. nematodiphila DSM 21420 (JPUX01000001.1)

Techniques Used:

The reference strain S. marcescens strain KS10 chromosome (CP027798.1) and compared strain Serattia sp. BTGE M_3. Sequence similarity is color coded from 0 to 1. CP027798 was used as a reference on the x-axis and BTGE M_3 as a query is on the y-axis. Genomic alignment regions are presented as five-colored lines, each corresponding to different similarity values (White: no match, Yellow: <25% similarity, Orange: 25–50% similarity, Green: 50–75% similarity, and Dark Green: >75%). The long stretches of dark green lines in the diagonal indicate high nucleotide similarity between the two strains of S. marcescens .

Figure Legend Snippet: The reference strain S. marcescens strain KS10 chromosome (CP027798.1) and compared strain Serattia sp. BTGE M_3. Sequence similarity is color coded from 0 to 1. CP027798 was used as a reference on the x-axis and BTGE M_3 as a query is on the y-axis. Genomic alignment regions are presented as five-colored lines, each corresponding to different similarity values (White: no match, Yellow: <25% similarity, Orange: 25–50% similarity, Green: 50–75% similarity, and Dark Green: >75%). The long stretches of dark green lines in the diagonal indicate high nucleotide similarity between the two strains of S. marcescens .

Techniques Used: Sequencing

S. nematodiphila strain DH-S01, S. marcescens strain KS10, S. marcescens BTGE-M 3(this study) and S.marcescens strain LCT-SM213. A. The numbers of clusters (dark blue), proteins (sky blue), and singletons (yellow) are displayed for each species in the bar chart. Singleton protein sequences refer to the sequences that did not cluster with any other sequences. B. The Venn diagram shows the distribution of orthologous protein clusters of predicted protein sequences, with different sections representing the number of protein clusters in each species. The graph below compares the number of clusters among the Serratia species.

Figure Legend Snippet: S. nematodiphila strain DH-S01, S. marcescens strain KS10, S. marcescens BTGE-M 3(this study) and S.marcescens strain LCT-SM213. A. The numbers of clusters (dark blue), proteins (sky blue), and singletons (yellow) are displayed for each species in the bar chart. Singleton protein sequences refer to the sequences that did not cluster with any other sequences. B. The Venn diagram shows the distribution of orthologous protein clusters of predicted protein sequences, with different sections representing the number of protein clusters in each species. The graph below compares the number of clusters among the Serratia species.

Techniques Used:

Resistance genes in the S. marcescens IU-BTGE-M_3 isolate detected with ResFinder

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Techniques Used:

Image Search Results

Journal: bioRxiv

Article Title: Comparative Genome Study of Multidrug-resistant Serratia marcescens strain IU-BTGE-M-3 Isolated from a Diarrheal Patient Reveals Antibiotic Resistance Profile

doi: 10.1101/2024.10.18.619060

Figure Lengend Snippet:

Article Snippet: Where all other strains expressed 65% except S. marcescens subsp. sakuensis KCTC 42172 (73.5%) and S. marcescens ATCC 13880 (73.1%) dDDH score.

Techniques: Comparison

Journal: bioRxiv

Article Title: Comparative Genome Study of Multidrug-resistant Serratia marcescens strain IU-BTGE-M-3 Isolated from a Diarrheal Patient Reveals Antibiotic Resistance Profile

doi: 10.1101/2024.10.18.619060

Figure Lengend Snippet: Five genomes alignment ( S. marcescens IU-BTGE-M_3, S. marcescens strain KS10 (CP027798.1), Serratia nematodiphila strain DH-S01 (CP038662.1) , S. marcescens LCT-SM213 (NZ_JH670250.1), and S. marcescens strain BWH-2 3 (CP020501.1) with MAUVE program. The figure presents the homologous regions, potential genomic rearrangements, and unique sequences within multiple aligned genomes. Each block, the software draws a similarity profile for the aligned region of the genome sequence. Completely white areas within the blocks indicate regions that were not aligned, possibly containing sequence elements specific to one genome. Colored blocks appear above and below the center line in each panel, representing regions of the genome sequence that align with parts of another genome.

Article Snippet: Where all other strains expressed 65% except S. marcescens subsp. sakuensis KCTC 42172 (73.5%) and S. marcescens ATCC 13880 (73.1%) dDDH score.

Techniques: Blocking Assay, Software, Sequencing

Journal: bioRxiv

Article Title: Comparative Genome Study of Multidrug-resistant Serratia marcescens strain IU-BTGE-M-3 Isolated from a Diarrheal Patient Reveals Antibiotic Resistance Profile

doi: 10.1101/2024.10.18.619060

Figure Lengend Snippet: Comparative study of closely related four whole genomes of Serratia species, including three Serratia marcescens ( S. marcescens strain KS10 (CP027798.1); S. marcescens strain BWH-23 (CP020501.1); S. marcescens LCT-SM213 (NZ_JH670250.1)] and two S. nematodiphila strains ( Serratia nematodiphila strain DH-S01 (CP038662.1); S. nematodiphila DSM 21420 (JPUX01000001.1)

Article Snippet: Where all other strains expressed 65% except S. marcescens subsp. sakuensis KCTC 42172 (73.5%) and S. marcescens ATCC 13880 (73.1%) dDDH score.

Techniques:

Journal: bioRxiv

Article Title: Comparative Genome Study of Multidrug-resistant Serratia marcescens strain IU-BTGE-M-3 Isolated from a Diarrheal Patient Reveals Antibiotic Resistance Profile

doi: 10.1101/2024.10.18.619060

Figure Lengend Snippet: The reference strain S. marcescens strain KS10 chromosome (CP027798.1) and compared strain Serattia sp. BTGE M_3. Sequence similarity is color coded from 0 to 1. CP027798 was used as a reference on the x-axis and BTGE M_3 as a query is on the y-axis. Genomic alignment regions are presented as five-colored lines, each corresponding to different similarity values (White: no match, Yellow: <25% similarity, Orange: 25–50% similarity, Green: 50–75% similarity, and Dark Green: >75%). The long stretches of dark green lines in the diagonal indicate high nucleotide similarity between the two strains of S. marcescens .

Article Snippet: Where all other strains expressed 65% except S. marcescens subsp. sakuensis KCTC 42172 (73.5%) and S. marcescens ATCC 13880 (73.1%) dDDH score.

Techniques: Sequencing

Journal: bioRxiv

Article Title: Comparative Genome Study of Multidrug-resistant Serratia marcescens strain IU-BTGE-M-3 Isolated from a Diarrheal Patient Reveals Antibiotic Resistance Profile

doi: 10.1101/2024.10.18.619060

Figure Lengend Snippet: S. nematodiphila strain DH-S01, S. marcescens strain KS10, S. marcescens BTGE-M 3(this study) and S.marcescens strain LCT-SM213. A. The numbers of clusters (dark blue), proteins (sky blue), and singletons (yellow) are displayed for each species in the bar chart. Singleton protein sequences refer to the sequences that did not cluster with any other sequences. B. The Venn diagram shows the distribution of orthologous protein clusters of predicted protein sequences, with different sections representing the number of protein clusters in each species. The graph below compares the number of clusters among the Serratia species.

Article Snippet: Where all other strains expressed 65% except S. marcescens subsp. sakuensis KCTC 42172 (73.5%) and S. marcescens ATCC 13880 (73.1%) dDDH score.

Techniques:

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