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mosquito hv genomics  (SPT Labtech)


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    SPT Labtech mosquito hv genomics
    Mosquito Hv Genomics, supplied by SPT Labtech, used in various techniques. Bioz Stars score: 96/100, based on 36 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/3079GEN/mosquito+HV+genomics/pm41254269-317-18-21
    Average 96 stars, based on 36 article reviews
    mosquito hv genomics - by Bioz Stars, 2026-09
    96/100 stars

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    Related Articles

    Generated:

    Article Title: Enhanced RNA-targeting CRISPR-Cas technology in zebrafish.
    Article Snippet: To determine the number of gRNAs that can be injected together to detect highly efficient gRNAs with CRISPR-RfxCas13d (Supplementary Fig. 5) and then to analyze the prediction of ex vivo computational models using in vivo data from 200 gRNAs injected in sets of 25 gRNAs (Fig. 4 and Supplementary Fig. 6), total RNAwas isolated at 4 hpf using Direct-zol RNA Miniprep Kit (#R2050, Zymo Research) following manufacturer’s instructions and quantified using the Qubit fluorometric quantification (#Q10210, ThermoFisher Scientific). cDNA was generated from 1.25 ng (2.5 ng for two replicates of RfxCas13d control samples) of high-quality total RNA, as assessed using the Bioanalyzer (Agilent), according to manufacturer’s directions for the SMART-seq v4Ultra Low Input RNAKit (Takara, 634891) at a 1/8th reaction volume (1/4th reaction volume for two replicates of RfxCas13d control) and using theMantis (Formulatrix) nanoliter liquid-handling instrument to pipette the reagents for cDNA synthesis. .. Libraries were generated manually (or with the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument for RNAseq in Fig. 4 and Supplementary Fig. 6), using the Nextera XTDNA Library Preparation Kit (Illumina, FC131-1096) at 1/8th reaction volumes (or 1/4th reaction volume for two replicates of RfxCas13d control) paired with IDT for Illumina DNA/RNA UD Indexes Set A (Illumina, 20027213), and purified using the Ampure XP bead-based reagent (Beckman Coulter, Cat. No. A63882). .. The resulting short fragment libraries were checked for quality and quantity using the Bioanalyzer and Qubit Fluorometer (ThermoFisher).

    Article Title: CRISPR-RfxCas13d screening uncovers Bckdk as a post-translational regulator of maternal-to-zygotic transition in teleosts
    Article Snippet: For RNA-seq libraries for maternal screening associated with Figs. and , cDNA was generated from 1.25 ng of high-quality total RNA (except for Cas13d control and bckdk mRNA KD where cDNA was generated from 2.5 ng of high-quality total RNA), as assessed using the Bioanalyzer (Agilent), according to manufacturer’s directions for the SMART-seq v4 Ultra Low Input RNA Kit (Takara, #634891) at a 1/8th reaction volume and using the Mantis (Formulatrix) nanoliter liquid-handling instrument to pipette the reagents for cDNA synthesis (except for Cas13d control and bckdk mRNA KD samples where 1/4th of the reaction volume were used). .. Libraries were generated manually (except for cab39l and calm2a mRNA KD samples where libraries were generated with the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument), using the Nextera XT DNA Library Preparation Kit (Illumina, FC-131-1096) at 1/8th reaction volumes (except for Cas13d control and bckdk mRNA KD samples where 1/4th of the reaction volume were used) paired with IDT for Illumina DNA/RNA UD Indexes Set A (Illumina, 20027213), and purified using the Ampure XP bead-based reagent (Beckman Coulter, Cat. No. A63882). .. Resulting short fragment libraries were checked for quality and quantity using the Bioanalyzer and Qubit Fluorometer (Thermo Fisher).

    Article Title: CRISPR-RfxCas13d screening uncovers Bckdk as a post-translational regulator of maternal-to-zygotic transition in teleosts.
    Article Snippet: For RNA-seq libraries for maternal screening associated with Figs. 1 and EV2, 3, cDNA was generated from 1.25 ng of highquality total RNA (except for Cas13d control and bckdk mRNA KD where cDNA was generated from 2.5 ng of high-quality total RNA), as assessed using the Bioanalyzer (Agilent), according to manufacturer’s directions for the SMART-seq v4 Ultra Low Input RNA Kit (Takara, #634891) at a 1/8th reaction volume and using the Mantis (Formulatrix) nanoliter liquid-handling instrument to pipette the reagents for cDNA synthesis (except for Cas13d control and bckdk mRNA KD samples where 1/4th of the reaction volume were used). .. Libraries were generated manually (except for cab39l and calm2a mRNA KD samples where libraries were generated with the Mosquito HV Genomics (SPT Labtech) nanoliter liquidhandling instrument), using the Nextera XT DNA Library Preparation Kit (Illumina, FC-131-1096) at 1/8th reaction volumes (except for Cas13d control and bckdk mRNA KD samples where 1/ 4th of the reaction volume were used) paired with IDT for Illumina DNA/RNA UD Indexes Set A (Illumina, 20027213), and purified using the Ampure XP bead-based reagent (Beckman Coulter, Cat. No. A63882). .. Resulting short fragment libraries were checked for quality and quantity using the Bioanalyzer and Qubit Fluorometer (Thermo Fisher).

    RNA sequencing:

    Article Title: Enhanced RNA-targeting CRISPR-Cas technology in zebrafish.
    Article Snippet: To determine the number of gRNAs that can be injected together to detect highly efficient gRNAs with CRISPR-RfxCas13d (Supplementary Fig. 5) and then to analyze the prediction of ex vivo computational models using in vivo data from 200 gRNAs injected in sets of 25 gRNAs (Fig. 4 and Supplementary Fig. 6), total RNAwas isolated at 4 hpf using Direct-zol RNA Miniprep Kit (#R2050, Zymo Research) following manufacturer’s instructions and quantified using the Qubit fluorometric quantification (#Q10210, ThermoFisher Scientific). cDNA was generated from 1.25 ng (2.5 ng for two replicates of RfxCas13d control samples) of high-quality total RNA, as assessed using the Bioanalyzer (Agilent), according to manufacturer’s directions for the SMART-seq v4Ultra Low Input RNAKit (Takara, 634891) at a 1/8th reaction volume (1/4th reaction volume for two replicates of RfxCas13d control) and using theMantis (Formulatrix) nanoliter liquid-handling instrument to pipette the reagents for cDNA synthesis. .. Libraries were generated manually (or with the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument for RNAseq in Fig. 4 and Supplementary Fig. 6), using the Nextera XTDNA Library Preparation Kit (Illumina, FC131-1096) at 1/8th reaction volumes (or 1/4th reaction volume for two replicates of RfxCas13d control) paired with IDT for Illumina DNA/RNA UD Indexes Set A (Illumina, 20027213), and purified using the Ampure XP bead-based reagent (Beckman Coulter, Cat. No. A63882). .. The resulting short fragment libraries were checked for quality and quantity using the Bioanalyzer and Qubit Fluorometer (ThermoFisher).

    Control:

    Article Title: Enhanced RNA-targeting CRISPR-Cas technology in zebrafish.
    Article Snippet: To determine the number of gRNAs that can be injected together to detect highly efficient gRNAs with CRISPR-RfxCas13d (Supplementary Fig. 5) and then to analyze the prediction of ex vivo computational models using in vivo data from 200 gRNAs injected in sets of 25 gRNAs (Fig. 4 and Supplementary Fig. 6), total RNAwas isolated at 4 hpf using Direct-zol RNA Miniprep Kit (#R2050, Zymo Research) following manufacturer’s instructions and quantified using the Qubit fluorometric quantification (#Q10210, ThermoFisher Scientific). cDNA was generated from 1.25 ng (2.5 ng for two replicates of RfxCas13d control samples) of high-quality total RNA, as assessed using the Bioanalyzer (Agilent), according to manufacturer’s directions for the SMART-seq v4Ultra Low Input RNAKit (Takara, 634891) at a 1/8th reaction volume (1/4th reaction volume for two replicates of RfxCas13d control) and using theMantis (Formulatrix) nanoliter liquid-handling instrument to pipette the reagents for cDNA synthesis. .. Libraries were generated manually (or with the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument for RNAseq in Fig. 4 and Supplementary Fig. 6), using the Nextera XTDNA Library Preparation Kit (Illumina, FC131-1096) at 1/8th reaction volumes (or 1/4th reaction volume for two replicates of RfxCas13d control) paired with IDT for Illumina DNA/RNA UD Indexes Set A (Illumina, 20027213), and purified using the Ampure XP bead-based reagent (Beckman Coulter, Cat. No. A63882). .. The resulting short fragment libraries were checked for quality and quantity using the Bioanalyzer and Qubit Fluorometer (ThermoFisher).

    Article Title: CRISPR-RfxCas13d screening uncovers Bckdk as a post-translational regulator of maternal-to-zygotic transition in teleosts
    Article Snippet: For RNA-seq libraries for maternal screening associated with Figs. and , cDNA was generated from 1.25 ng of high-quality total RNA (except for Cas13d control and bckdk mRNA KD where cDNA was generated from 2.5 ng of high-quality total RNA), as assessed using the Bioanalyzer (Agilent), according to manufacturer’s directions for the SMART-seq v4 Ultra Low Input RNA Kit (Takara, #634891) at a 1/8th reaction volume and using the Mantis (Formulatrix) nanoliter liquid-handling instrument to pipette the reagents for cDNA synthesis (except for Cas13d control and bckdk mRNA KD samples where 1/4th of the reaction volume were used). .. Libraries were generated manually (except for cab39l and calm2a mRNA KD samples where libraries were generated with the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument), using the Nextera XT DNA Library Preparation Kit (Illumina, FC-131-1096) at 1/8th reaction volumes (except for Cas13d control and bckdk mRNA KD samples where 1/4th of the reaction volume were used) paired with IDT for Illumina DNA/RNA UD Indexes Set A (Illumina, 20027213), and purified using the Ampure XP bead-based reagent (Beckman Coulter, Cat. No. A63882). .. Resulting short fragment libraries were checked for quality and quantity using the Bioanalyzer and Qubit Fluorometer (Thermo Fisher).

    Article Title: CRISPR-RfxCas13d screening uncovers Bckdk as a post-translational regulator of maternal-to-zygotic transition in teleosts.
    Article Snippet: For RNA-seq libraries for maternal screening associated with Figs. 1 and EV2, 3, cDNA was generated from 1.25 ng of highquality total RNA (except for Cas13d control and bckdk mRNA KD where cDNA was generated from 2.5 ng of high-quality total RNA), as assessed using the Bioanalyzer (Agilent), according to manufacturer’s directions for the SMART-seq v4 Ultra Low Input RNA Kit (Takara, #634891) at a 1/8th reaction volume and using the Mantis (Formulatrix) nanoliter liquid-handling instrument to pipette the reagents for cDNA synthesis (except for Cas13d control and bckdk mRNA KD samples where 1/4th of the reaction volume were used). .. Libraries were generated manually (except for cab39l and calm2a mRNA KD samples where libraries were generated with the Mosquito HV Genomics (SPT Labtech) nanoliter liquidhandling instrument), using the Nextera XT DNA Library Preparation Kit (Illumina, FC-131-1096) at 1/8th reaction volumes (except for Cas13d control and bckdk mRNA KD samples where 1/ 4th of the reaction volume were used) paired with IDT for Illumina DNA/RNA UD Indexes Set A (Illumina, 20027213), and purified using the Ampure XP bead-based reagent (Beckman Coulter, Cat. No. A63882). .. Resulting short fragment libraries were checked for quality and quantity using the Bioanalyzer and Qubit Fluorometer (Thermo Fisher).

    Purification:

    Article Title: Enhanced RNA-targeting CRISPR-Cas technology in zebrafish.
    Article Snippet: To determine the number of gRNAs that can be injected together to detect highly efficient gRNAs with CRISPR-RfxCas13d (Supplementary Fig. 5) and then to analyze the prediction of ex vivo computational models using in vivo data from 200 gRNAs injected in sets of 25 gRNAs (Fig. 4 and Supplementary Fig. 6), total RNAwas isolated at 4 hpf using Direct-zol RNA Miniprep Kit (#R2050, Zymo Research) following manufacturer’s instructions and quantified using the Qubit fluorometric quantification (#Q10210, ThermoFisher Scientific). cDNA was generated from 1.25 ng (2.5 ng for two replicates of RfxCas13d control samples) of high-quality total RNA, as assessed using the Bioanalyzer (Agilent), according to manufacturer’s directions for the SMART-seq v4Ultra Low Input RNAKit (Takara, 634891) at a 1/8th reaction volume (1/4th reaction volume for two replicates of RfxCas13d control) and using theMantis (Formulatrix) nanoliter liquid-handling instrument to pipette the reagents for cDNA synthesis. .. Libraries were generated manually (or with the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument for RNAseq in Fig. 4 and Supplementary Fig. 6), using the Nextera XTDNA Library Preparation Kit (Illumina, FC131-1096) at 1/8th reaction volumes (or 1/4th reaction volume for two replicates of RfxCas13d control) paired with IDT for Illumina DNA/RNA UD Indexes Set A (Illumina, 20027213), and purified using the Ampure XP bead-based reagent (Beckman Coulter, Cat. No. A63882). .. The resulting short fragment libraries were checked for quality and quantity using the Bioanalyzer and Qubit Fluorometer (ThermoFisher).

    Article Title: Enhanced RNA-targeting CRISPR-Cas technology in zebrafish.
    Article Snippet: Truncated stubby adapterswere ligatedby adding 1 μL of IDT xGen Stubby Adapter diluted to 1 μM in Buffer EB (QIAgen, Cat. No. 19086). .. The adapter-ligated material was purified using the SPRIselect bead-based reagent (Beckman Coulter, Cat. No. B23318) at 0.7X with the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument and eluted in 4 μL of Buffer EB. .. Thepurified adapter-ligated librarieswerePCR amplifiedwith 13 cycles using the IDT xGen Unique Dual Indexing primers (IDT, Cat. No. 10005921) and the indexed libraries were purified using SPRIselect at 1X with the Mosquito HV and eluted in 10 μL of Buffer EB.

    Article Title: CRISPR-RfxCas13d screening uncovers Bckdk as a post-translational regulator of maternal-to-zygotic transition in teleosts
    Article Snippet: For RNA-seq libraries for maternal screening associated with Figs. and , cDNA was generated from 1.25 ng of high-quality total RNA (except for Cas13d control and bckdk mRNA KD where cDNA was generated from 2.5 ng of high-quality total RNA), as assessed using the Bioanalyzer (Agilent), according to manufacturer’s directions for the SMART-seq v4 Ultra Low Input RNA Kit (Takara, #634891) at a 1/8th reaction volume and using the Mantis (Formulatrix) nanoliter liquid-handling instrument to pipette the reagents for cDNA synthesis (except for Cas13d control and bckdk mRNA KD samples where 1/4th of the reaction volume were used). .. Libraries were generated manually (except for cab39l and calm2a mRNA KD samples where libraries were generated with the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument), using the Nextera XT DNA Library Preparation Kit (Illumina, FC-131-1096) at 1/8th reaction volumes (except for Cas13d control and bckdk mRNA KD samples where 1/4th of the reaction volume were used) paired with IDT for Illumina DNA/RNA UD Indexes Set A (Illumina, 20027213), and purified using the Ampure XP bead-based reagent (Beckman Coulter, Cat. No. A63882). .. Resulting short fragment libraries were checked for quality and quantity using the Bioanalyzer and Qubit Fluorometer (Thermo Fisher).

    Article Title: CRISPR-RfxCas13d screening uncovers Bckdk as a post-translational regulator of maternal-to-zygotic transition in teleosts.
    Article Snippet: For RNA-seq libraries for maternal screening associated with Figs. 1 and EV2, 3, cDNA was generated from 1.25 ng of highquality total RNA (except for Cas13d control and bckdk mRNA KD where cDNA was generated from 2.5 ng of high-quality total RNA), as assessed using the Bioanalyzer (Agilent), according to manufacturer’s directions for the SMART-seq v4 Ultra Low Input RNA Kit (Takara, #634891) at a 1/8th reaction volume and using the Mantis (Formulatrix) nanoliter liquid-handling instrument to pipette the reagents for cDNA synthesis (except for Cas13d control and bckdk mRNA KD samples where 1/4th of the reaction volume were used). .. Libraries were generated manually (except for cab39l and calm2a mRNA KD samples where libraries were generated with the Mosquito HV Genomics (SPT Labtech) nanoliter liquidhandling instrument), using the Nextera XT DNA Library Preparation Kit (Illumina, FC-131-1096) at 1/8th reaction volumes (except for Cas13d control and bckdk mRNA KD samples where 1/ 4th of the reaction volume were used) paired with IDT for Illumina DNA/RNA UD Indexes Set A (Illumina, 20027213), and purified using the Ampure XP bead-based reagent (Beckman Coulter, Cat. No. A63882). .. Resulting short fragment libraries were checked for quality and quantity using the Bioanalyzer and Qubit Fluorometer (Thermo Fisher).

    cDNA Synthesis:

    Article Title: Enhanced RNA-targeting CRISPR-Cas technology in zebrafish.
    Article Snippet: .. First-strand cDNA synthesis was performed by manually transferring 1 μL of the fragmented mRNA into a 384-well Armadillo PCR microplate (ThermoFisher, AB2396), containing 1 μL of the First-Strand cDNA synthesis reaction master mix aliquoted by the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument. .. Second-strand synthesis was completed per protocol at the miniaturization scale and the cDNA was purified using the SPRIselect bead-based reagent (Beckman Coulter, Cat. No. B23318) at 1.8X with the Mosquito HV and eluted in 5 μL of 0.1X TE.

    Article Title: Enhanced RNA-targeting CRISPR-Cas technology in zebrafish
    Article Snippet: Purified mRNA was processed using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Cat. No. E7760L) at a 1/10th reaction volume. .. Poly(A) isolated mRNA was resuspended in 2.25 μL fragmentation mix and fragmented for 15 min at 94 °C then placed on ice for 2 min. First-strand cDNA synthesis was performed by manually transferring 1 μL of the fragmented mRNA into a 384-well Armadillo PCR microplate (ThermoFisher, AB2396), containing 1 μL of the First-Strand cDNA synthesis reaction master mix aliquoted by the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument. .. Second-strand synthesis was completed per protocol at the miniaturization scale and the cDNA was purified using the SPRIselect bead-based reagent (Beckman Coulter, Cat. No. B23318) at 1.8X with the Mosquito HV and eluted in 5 μL of 0.1X TE.

    Transferring:

    Article Title: Enhanced RNA-targeting CRISPR-Cas technology in zebrafish.
    Article Snippet: .. First-strand cDNA synthesis was performed by manually transferring 1 μL of the fragmented mRNA into a 384-well Armadillo PCR microplate (ThermoFisher, AB2396), containing 1 μL of the First-Strand cDNA synthesis reaction master mix aliquoted by the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument. .. Second-strand synthesis was completed per protocol at the miniaturization scale and the cDNA was purified using the SPRIselect bead-based reagent (Beckman Coulter, Cat. No. B23318) at 1.8X with the Mosquito HV and eluted in 5 μL of 0.1X TE.

    Article Title: Enhanced RNA-targeting CRISPR-Cas technology in zebrafish
    Article Snippet: Purified mRNA was processed using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Cat. No. E7760L) at a 1/10th reaction volume. .. Poly(A) isolated mRNA was resuspended in 2.25 μL fragmentation mix and fragmented for 15 min at 94 °C then placed on ice for 2 min. First-strand cDNA synthesis was performed by manually transferring 1 μL of the fragmented mRNA into a 384-well Armadillo PCR microplate (ThermoFisher, AB2396), containing 1 μL of the First-Strand cDNA synthesis reaction master mix aliquoted by the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument. .. Second-strand synthesis was completed per protocol at the miniaturization scale and the cDNA was purified using the SPRIselect bead-based reagent (Beckman Coulter, Cat. No. B23318) at 1.8X with the Mosquito HV and eluted in 5 μL of 0.1X TE.

    Polymerase Chain Reaction:

    Article Title: Enhanced RNA-targeting CRISPR-Cas technology in zebrafish.
    Article Snippet: .. First-strand cDNA synthesis was performed by manually transferring 1 μL of the fragmented mRNA into a 384-well Armadillo PCR microplate (ThermoFisher, AB2396), containing 1 μL of the First-Strand cDNA synthesis reaction master mix aliquoted by the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument. .. Second-strand synthesis was completed per protocol at the miniaturization scale and the cDNA was purified using the SPRIselect bead-based reagent (Beckman Coulter, Cat. No. B23318) at 1.8X with the Mosquito HV and eluted in 5 μL of 0.1X TE.

    Article Title: Enhanced RNA-targeting CRISPR-Cas technology in zebrafish
    Article Snippet: Purified mRNA was processed using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Cat. No. E7760L) at a 1/10th reaction volume. .. Poly(A) isolated mRNA was resuspended in 2.25 μL fragmentation mix and fragmented for 15 min at 94 °C then placed on ice for 2 min. First-strand cDNA synthesis was performed by manually transferring 1 μL of the fragmented mRNA into a 384-well Armadillo PCR microplate (ThermoFisher, AB2396), containing 1 μL of the First-Strand cDNA synthesis reaction master mix aliquoted by the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument. .. Second-strand synthesis was completed per protocol at the miniaturization scale and the cDNA was purified using the SPRIselect bead-based reagent (Beckman Coulter, Cat. No. B23318) at 1.8X with the Mosquito HV and eluted in 5 μL of 0.1X TE.

    DNA Library Preparation:

    Article Title: CRISPR-RfxCas13d screening uncovers Bckdk as a post-translational regulator of maternal-to-zygotic transition in teleosts
    Article Snippet: For RNA-seq libraries for maternal screening associated with Figs. and , cDNA was generated from 1.25 ng of high-quality total RNA (except for Cas13d control and bckdk mRNA KD where cDNA was generated from 2.5 ng of high-quality total RNA), as assessed using the Bioanalyzer (Agilent), according to manufacturer’s directions for the SMART-seq v4 Ultra Low Input RNA Kit (Takara, #634891) at a 1/8th reaction volume and using the Mantis (Formulatrix) nanoliter liquid-handling instrument to pipette the reagents for cDNA synthesis (except for Cas13d control and bckdk mRNA KD samples where 1/4th of the reaction volume were used). .. Libraries were generated manually (except for cab39l and calm2a mRNA KD samples where libraries were generated with the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument), using the Nextera XT DNA Library Preparation Kit (Illumina, FC-131-1096) at 1/8th reaction volumes (except for Cas13d control and bckdk mRNA KD samples where 1/4th of the reaction volume were used) paired with IDT for Illumina DNA/RNA UD Indexes Set A (Illumina, 20027213), and purified using the Ampure XP bead-based reagent (Beckman Coulter, Cat. No. A63882). .. Resulting short fragment libraries were checked for quality and quantity using the Bioanalyzer and Qubit Fluorometer (Thermo Fisher).

    Article Title: CRISPR-RfxCas13d screening uncovers Bckdk as a post-translational regulator of maternal-to-zygotic transition in teleosts.
    Article Snippet: For RNA-seq libraries for maternal screening associated with Figs. 1 and EV2, 3, cDNA was generated from 1.25 ng of highquality total RNA (except for Cas13d control and bckdk mRNA KD where cDNA was generated from 2.5 ng of high-quality total RNA), as assessed using the Bioanalyzer (Agilent), according to manufacturer’s directions for the SMART-seq v4 Ultra Low Input RNA Kit (Takara, #634891) at a 1/8th reaction volume and using the Mantis (Formulatrix) nanoliter liquid-handling instrument to pipette the reagents for cDNA synthesis (except for Cas13d control and bckdk mRNA KD samples where 1/4th of the reaction volume were used). .. Libraries were generated manually (except for cab39l and calm2a mRNA KD samples where libraries were generated with the Mosquito HV Genomics (SPT Labtech) nanoliter liquidhandling instrument), using the Nextera XT DNA Library Preparation Kit (Illumina, FC-131-1096) at 1/8th reaction volumes (except for Cas13d control and bckdk mRNA KD samples where 1/ 4th of the reaction volume were used) paired with IDT for Illumina DNA/RNA UD Indexes Set A (Illumina, 20027213), and purified using the Ampure XP bead-based reagent (Beckman Coulter, Cat. No. A63882). .. Resulting short fragment libraries were checked for quality and quantity using the Bioanalyzer and Qubit Fluorometer (Thermo Fisher).

    Isolation:

    Article Title: Enhanced RNA-targeting CRISPR-Cas technology in zebrafish
    Article Snippet: Purified mRNA was processed using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Cat. No. E7760L) at a 1/10th reaction volume. .. Poly(A) isolated mRNA was resuspended in 2.25 μL fragmentation mix and fragmented for 15 min at 94 °C then placed on ice for 2 min. First-strand cDNA synthesis was performed by manually transferring 1 μL of the fragmented mRNA into a 384-well Armadillo PCR microplate (ThermoFisher, AB2396), containing 1 μL of the First-Strand cDNA synthesis reaction master mix aliquoted by the Mosquito HV Genomics (SPT Labtech) nanoliter liquid-handling instrument. .. Second-strand synthesis was completed per protocol at the miniaturization scale and the cDNA was purified using the SPRIselect bead-based reagent (Beckman Coulter, Cat. No. B23318) at 1.8X with the Mosquito HV and eluted in 5 μL of 0.1X TE.



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