desulfovibrio vulgaris atcc 29579  (ATCC)


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    ATCC desulfovibrio vulgaris atcc 29579
    Correlation matrix for D. vulgaris gene expression that compares biofilm cells to planktonic cells grown with different substrates using a centered Pearson correlation. Cells were grown in a defined S4D medium with sulfate (except for ‘pyruvate only’), and provided with a different carbon and energy source (lactate, pyruvate, hydrogen, or formate). The correlation matrix was generated with MicrobesOnline functional genomics analysis (microbesonline.org).
    Desulfovibrio Vulgaris Atcc 29579, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/desulfovibrio vulgaris atcc 29579/product/ATCC
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    desulfovibrio vulgaris atcc 29579 - by Bioz Stars, 2024-07
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    1) Product Images from "Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state"

    Article Title: Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state

    Journal: BMC Genomics

    doi: 10.1186/1471-2164-13-138

    Correlation matrix for D. vulgaris gene expression that compares biofilm cells to planktonic cells grown with different substrates using a centered Pearson correlation. Cells were grown in a defined S4D medium with sulfate (except for ‘pyruvate only’), and provided with a different carbon and energy source (lactate, pyruvate, hydrogen, or formate). The correlation matrix was generated with MicrobesOnline functional genomics analysis (microbesonline.org).
    Figure Legend Snippet: Correlation matrix for D. vulgaris gene expression that compares biofilm cells to planktonic cells grown with different substrates using a centered Pearson correlation. Cells were grown in a defined S4D medium with sulfate (except for ‘pyruvate only’), and provided with a different carbon and energy source (lactate, pyruvate, hydrogen, or formate). The correlation matrix was generated with MicrobesOnline functional genomics analysis (microbesonline.org).

    Techniques Used: Expressing, Generated, Functional Assay

    Cell-wide depiction of significantly up-expressed transcripts for mature D. vulgaris biofilms compared to both batch and chemostat planktonic cells. The following genes were also detected as significantly up-expressed proteins: SodB, KatA, Hsp20 (DVU2441), Hsp20 (DVU2442), UspA (DVU0423).
    Figure Legend Snippet: Cell-wide depiction of significantly up-expressed transcripts for mature D. vulgaris biofilms compared to both batch and chemostat planktonic cells. The following genes were also detected as significantly up-expressed proteins: SodB, KatA, Hsp20 (DVU2441), Hsp20 (DVU2442), UspA (DVU0423).

    Techniques Used:

    Conceptual model (a) of the transcriptional responses in energy metabolism and pyruvate-acetate metabolic node for a mature D. vulgaris biofilm (red is up-expressed and blue is down-expressed) compared to planktonic cells.
    Figure Legend Snippet: Conceptual model (a) of the transcriptional responses in energy metabolism and pyruvate-acetate metabolic node for a mature D. vulgaris biofilm (red is up-expressed and blue is down-expressed) compared to planktonic cells.

    Techniques Used:

    emd 29579  (Thermo Fisher)


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    Thermo Fisher emd 29579
    Emd 29579, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    emd 29579  (Thermo Fisher)


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    Thermo Fisher emd 29579
    Emd 29579, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    emd 29579  (Thermo Fisher)


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    Thermo Fisher emd 29579
    Emd 29579, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    emd 29579  (Thermo Fisher)


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    Thermo Fisher emd 29579
    Emd 29579, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    desulfovibrio vulgaris atcc 29579  (ATCC)


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    ATCC desulfovibrio vulgaris atcc 29579
    Correlation matrix for D. vulgaris gene expression that compares biofilm cells to planktonic cells grown with different substrates using a centered Pearson correlation. Cells were grown in a defined S4D medium with sulfate (except for ‘pyruvate only’), and provided with a different carbon and energy source (lactate, pyruvate, hydrogen, or formate). The correlation matrix was generated with MicrobesOnline functional genomics analysis (microbesonline.org).
    Desulfovibrio Vulgaris Atcc 29579, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/desulfovibrio vulgaris atcc 29579/product/ATCC
    Average 95 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    desulfovibrio vulgaris atcc 29579 - by Bioz Stars, 2024-07
    95/100 stars

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    1) Product Images from "Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state"

    Article Title: Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state

    Journal: BMC Genomics

    doi: 10.1186/1471-2164-13-138

    Correlation matrix for D. vulgaris gene expression that compares biofilm cells to planktonic cells grown with different substrates using a centered Pearson correlation. Cells were grown in a defined S4D medium with sulfate (except for ‘pyruvate only’), and provided with a different carbon and energy source (lactate, pyruvate, hydrogen, or formate). The correlation matrix was generated with MicrobesOnline functional genomics analysis (microbesonline.org).
    Figure Legend Snippet: Correlation matrix for D. vulgaris gene expression that compares biofilm cells to planktonic cells grown with different substrates using a centered Pearson correlation. Cells were grown in a defined S4D medium with sulfate (except for ‘pyruvate only’), and provided with a different carbon and energy source (lactate, pyruvate, hydrogen, or formate). The correlation matrix was generated with MicrobesOnline functional genomics analysis (microbesonline.org).

    Techniques Used: Expressing, Generated, Functional Assay

    Cell-wide depiction of significantly up-expressed transcripts for mature D. vulgaris biofilms compared to both batch and chemostat planktonic cells. The following genes were also detected as significantly up-expressed proteins: SodB, KatA, Hsp20 (DVU2441), Hsp20 (DVU2442), UspA (DVU0423).
    Figure Legend Snippet: Cell-wide depiction of significantly up-expressed transcripts for mature D. vulgaris biofilms compared to both batch and chemostat planktonic cells. The following genes were also detected as significantly up-expressed proteins: SodB, KatA, Hsp20 (DVU2441), Hsp20 (DVU2442), UspA (DVU0423).

    Techniques Used:

    Conceptual model (a) of the transcriptional responses in energy metabolism and pyruvate-acetate metabolic node for a mature D. vulgaris biofilm (red is up-expressed and blue is down-expressed) compared to planktonic cells.
    Figure Legend Snippet: Conceptual model (a) of the transcriptional responses in energy metabolism and pyruvate-acetate metabolic node for a mature D. vulgaris biofilm (red is up-expressed and blue is down-expressed) compared to planktonic cells.

    Techniques Used:

    desulfovibrio vulgaris subsp vulgaris strain hildenborough  (ATCC)


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    ATCC desulfovibrio vulgaris subsp vulgaris strain hildenborough
    Expected bacterial 16S rRNA gene copies were calculated based on four and five 16S copies per genome for ( a ) P. aeruginosa and ( b ) D. <t>vulgaris</t> , respectively. Black bars = predicted 16S copies. White bars = estimated 16S copies based on supercoiled plasmid standard. Grey bars = estimated 16S copies based on nicked-circular plasmid standard. Black and white striped bars = estimated 16S copies based on linearized plasmid standard. Black and gray striped bars = estimated 16S copies based on amplicon-based standard. Data are the average (n = 3) and error bars are ±1 standard deviation among replicates.
    Desulfovibrio Vulgaris Subsp Vulgaris Strain Hildenborough, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Similar Gene Estimates from Circular and Linear Standards in Quantitative PCR Analyses Using the Prokaryotic 16S rRNA Gene as a Model"

    Article Title: Similar Gene Estimates from Circular and Linear Standards in Quantitative PCR Analyses Using the Prokaryotic 16S rRNA Gene as a Model

    Journal: PLoS ONE

    doi: 10.1371/journal.pone.0051931

    Expected bacterial 16S rRNA gene copies were calculated based on four and five 16S copies per genome for ( a ) P. aeruginosa and ( b ) D. vulgaris , respectively. Black bars = predicted 16S copies. White bars = estimated 16S copies based on supercoiled plasmid standard. Grey bars = estimated 16S copies based on nicked-circular plasmid standard. Black and white striped bars = estimated 16S copies based on linearized plasmid standard. Black and gray striped bars = estimated 16S copies based on amplicon-based standard. Data are the average (n = 3) and error bars are ±1 standard deviation among replicates.
    Figure Legend Snippet: Expected bacterial 16S rRNA gene copies were calculated based on four and five 16S copies per genome for ( a ) P. aeruginosa and ( b ) D. vulgaris , respectively. Black bars = predicted 16S copies. White bars = estimated 16S copies based on supercoiled plasmid standard. Grey bars = estimated 16S copies based on nicked-circular plasmid standard. Black and white striped bars = estimated 16S copies based on linearized plasmid standard. Black and gray striped bars = estimated 16S copies based on amplicon-based standard. Data are the average (n = 3) and error bars are ±1 standard deviation among replicates.

    Techniques Used: Plasmid Preparation, Amplification, Standard Deviation

    Estimated and expected 16S rRNA gene copies in microbial gDNA samples based on qPCR standard curves.
    Figure Legend Snippet: Estimated and expected 16S rRNA gene copies in microbial gDNA samples based on qPCR standard curves.

    Techniques Used: Amplification


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    DSMZ stenotrophomonas maltophilia
    List of probes used in this study
    Stenotrophomonas Maltophilia, supplied by DSMZ, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Identification of human pathogens isolated from blood using microarray hybridisation and signal pattern recognition"

    Article Title: Identification of human pathogens isolated from blood using microarray hybridisation and signal pattern recognition

    Journal: BMC Microbiology

    doi: 10.1186/1471-2180-7-78

    List of probes used in this study
    Figure Legend Snippet: List of probes used in this study

    Techniques Used:

    desulfovibrio vulgaris  (ATCC)


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    ATCC desulfovibrio vulgaris
    Desulfovibrio Vulgaris, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    DSMZ stenotrophomonas maltophilia
    Non- Francisella organisms from the strain collection of the Bundeswehr Institute of Microbiology tested to assess the specificity of the FISH assay
    Stenotrophomonas Maltophilia, supplied by DSMZ, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Rapid differentiation of Francisella species and subspecies by fluorescent in situ hybridization targeting the 23S rRNA"

    Article Title: Rapid differentiation of Francisella species and subspecies by fluorescent in situ hybridization targeting the 23S rRNA

    Journal: BMC Microbiology

    doi: 10.1186/1471-2180-10-72

    Non- Francisella organisms from the strain collection of the Bundeswehr Institute of Microbiology tested to assess the specificity of the FISH assay
    Figure Legend Snippet: Non- Francisella organisms from the strain collection of the Bundeswehr Institute of Microbiology tested to assess the specificity of the FISH assay

    Techniques Used:

    desulfovibrio vulgaris subsp vulgaris  (ATCC)


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    ATCC desulfovibrio vulgaris subsp vulgaris
    Desulfovibrio Vulgaris Subsp Vulgaris, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC desulfovibrio vulgaris atcc 29579
    Correlation matrix for D. vulgaris gene expression that compares biofilm cells to planktonic cells grown with different substrates using a centered Pearson correlation. Cells were grown in a defined S4D medium with sulfate (except for ‘pyruvate only’), and provided with a different carbon and energy source (lactate, pyruvate, hydrogen, or formate). The correlation matrix was generated with MicrobesOnline functional genomics analysis (microbesonline.org).
    Desulfovibrio Vulgaris Atcc 29579, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/desulfovibrio vulgaris atcc 29579/product/ATCC
    Average 95 stars, based on 1 article reviews
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    desulfovibrio vulgaris atcc 29579 - by Bioz Stars, 2024-07
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    Thermo Fisher emd 29579
    Correlation matrix for D. vulgaris gene expression that compares biofilm cells to planktonic cells grown with different substrates using a centered Pearson correlation. Cells were grown in a defined S4D medium with sulfate (except for ‘pyruvate only’), and provided with a different carbon and energy source (lactate, pyruvate, hydrogen, or formate). The correlation matrix was generated with MicrobesOnline functional genomics analysis (microbesonline.org).
    Emd 29579, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC desulfovibrio vulgaris subsp vulgaris strain hildenborough
    Expected bacterial 16S rRNA gene copies were calculated based on four and five 16S copies per genome for ( a ) P. aeruginosa and ( b ) D. <t>vulgaris</t> , respectively. Black bars = predicted 16S copies. White bars = estimated 16S copies based on supercoiled plasmid standard. Grey bars = estimated 16S copies based on nicked-circular plasmid standard. Black and white striped bars = estimated 16S copies based on linearized plasmid standard. Black and gray striped bars = estimated 16S copies based on amplicon-based standard. Data are the average (n = 3) and error bars are ±1 standard deviation among replicates.
    Desulfovibrio Vulgaris Subsp Vulgaris Strain Hildenborough, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    DSMZ stenotrophomonas maltophilia
    List of probes used in this study
    Stenotrophomonas Maltophilia, supplied by DSMZ, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC desulfovibrio vulgaris
    List of probes used in this study
    Desulfovibrio Vulgaris, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ATCC desulfovibrio vulgaris subsp vulgaris
    List of probes used in this study
    Desulfovibrio Vulgaris Subsp Vulgaris, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Correlation matrix for D. vulgaris gene expression that compares biofilm cells to planktonic cells grown with different substrates using a centered Pearson correlation. Cells were grown in a defined S4D medium with sulfate (except for ‘pyruvate only’), and provided with a different carbon and energy source (lactate, pyruvate, hydrogen, or formate). The correlation matrix was generated with MicrobesOnline functional genomics analysis (microbesonline.org).

    Journal: BMC Genomics

    Article Title: Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state

    doi: 10.1186/1471-2164-13-138

    Figure Lengend Snippet: Correlation matrix for D. vulgaris gene expression that compares biofilm cells to planktonic cells grown with different substrates using a centered Pearson correlation. Cells were grown in a defined S4D medium with sulfate (except for ‘pyruvate only’), and provided with a different carbon and energy source (lactate, pyruvate, hydrogen, or formate). The correlation matrix was generated with MicrobesOnline functional genomics analysis (microbesonline.org).

    Article Snippet: Cultures of Desulfovibrio vulgaris ATCC 29579 were acquired from Dr. T.C.

    Techniques: Expressing, Generated, Functional Assay

    Cell-wide depiction of significantly up-expressed transcripts for mature D. vulgaris biofilms compared to both batch and chemostat planktonic cells. The following genes were also detected as significantly up-expressed proteins: SodB, KatA, Hsp20 (DVU2441), Hsp20 (DVU2442), UspA (DVU0423).

    Journal: BMC Genomics

    Article Title: Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state

    doi: 10.1186/1471-2164-13-138

    Figure Lengend Snippet: Cell-wide depiction of significantly up-expressed transcripts for mature D. vulgaris biofilms compared to both batch and chemostat planktonic cells. The following genes were also detected as significantly up-expressed proteins: SodB, KatA, Hsp20 (DVU2441), Hsp20 (DVU2442), UspA (DVU0423).

    Article Snippet: Cultures of Desulfovibrio vulgaris ATCC 29579 were acquired from Dr. T.C.

    Techniques:

    Conceptual model (a) of the transcriptional responses in energy metabolism and pyruvate-acetate metabolic node for a mature D. vulgaris biofilm (red is up-expressed and blue is down-expressed) compared to planktonic cells.

    Journal: BMC Genomics

    Article Title: Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state

    doi: 10.1186/1471-2164-13-138

    Figure Lengend Snippet: Conceptual model (a) of the transcriptional responses in energy metabolism and pyruvate-acetate metabolic node for a mature D. vulgaris biofilm (red is up-expressed and blue is down-expressed) compared to planktonic cells.

    Article Snippet: Cultures of Desulfovibrio vulgaris ATCC 29579 were acquired from Dr. T.C.

    Techniques:

    Expected bacterial 16S rRNA gene copies were calculated based on four and five 16S copies per genome for ( a ) P. aeruginosa and ( b ) D. vulgaris , respectively. Black bars = predicted 16S copies. White bars = estimated 16S copies based on supercoiled plasmid standard. Grey bars = estimated 16S copies based on nicked-circular plasmid standard. Black and white striped bars = estimated 16S copies based on linearized plasmid standard. Black and gray striped bars = estimated 16S copies based on amplicon-based standard. Data are the average (n = 3) and error bars are ±1 standard deviation among replicates.

    Journal: PLoS ONE

    Article Title: Similar Gene Estimates from Circular and Linear Standards in Quantitative PCR Analyses Using the Prokaryotic 16S rRNA Gene as a Model

    doi: 10.1371/journal.pone.0051931

    Figure Lengend Snippet: Expected bacterial 16S rRNA gene copies were calculated based on four and five 16S copies per genome for ( a ) P. aeruginosa and ( b ) D. vulgaris , respectively. Black bars = predicted 16S copies. White bars = estimated 16S copies based on supercoiled plasmid standard. Grey bars = estimated 16S copies based on nicked-circular plasmid standard. Black and white striped bars = estimated 16S copies based on linearized plasmid standard. Black and gray striped bars = estimated 16S copies based on amplicon-based standard. Data are the average (n = 3) and error bars are ±1 standard deviation among replicates.

    Article Snippet: Lyophilized genomic DNA samples from Desulfovibrio vulgaris subsp. vulgaris strain Hildenborough (NCIB 8303/ATCC 29579), Pseudomonas aeruginosa strain PAO1-LAC (ATCC 47085), Archaeoglobus fulgidus strain VC16 (DSM 4304/ATCC 49203), and Methanocaldococcus jannaschii strain JAL-1 (DSM 2661/ATCC 43067) were purchased from the American Type Culture Collection (ATCC).

    Techniques: Plasmid Preparation, Amplification, Standard Deviation

    Estimated and expected 16S rRNA gene copies in microbial gDNA samples based on qPCR standard curves.

    Journal: PLoS ONE

    Article Title: Similar Gene Estimates from Circular and Linear Standards in Quantitative PCR Analyses Using the Prokaryotic 16S rRNA Gene as a Model

    doi: 10.1371/journal.pone.0051931

    Figure Lengend Snippet: Estimated and expected 16S rRNA gene copies in microbial gDNA samples based on qPCR standard curves.

    Article Snippet: Lyophilized genomic DNA samples from Desulfovibrio vulgaris subsp. vulgaris strain Hildenborough (NCIB 8303/ATCC 29579), Pseudomonas aeruginosa strain PAO1-LAC (ATCC 47085), Archaeoglobus fulgidus strain VC16 (DSM 4304/ATCC 49203), and Methanocaldococcus jannaschii strain JAL-1 (DSM 2661/ATCC 43067) were purchased from the American Type Culture Collection (ATCC).

    Techniques: Amplification

    List of probes used in this study

    Journal: BMC Microbiology

    Article Title: Identification of human pathogens isolated from blood using microarray hybridisation and signal pattern recognition

    doi: 10.1186/1471-2180-7-78

    Figure Lengend Snippet: List of probes used in this study

    Article Snippet: Microarray testing was performed on Escherichia coli (ATCC 35218, clinical isolates: 11063, 15130, 81617, 68933, 68307), Enterobacter aerogenes (DSMZ 30053, clinical isolate: 12676), Enterobacter cloacae (clinical isolates: 26385, 79232, 93840, 12720, 74892), Klebsiella pneumoniae (clinical isolates: 25809, 85813, 26385, 13253), Klebsiella oxytoca (clinical isolates: 26785, 26384, 73739, 26786, 96633), Citrobacter koseri (DSMZ 4595), Citrobacter freundii (clinical isolates: 80324, 73489), Staphylococcus aureus (ATCC 6538, ATCC 25923, ATCC 29213, clinical isolates: 83799, 82913, 73237, 12998), Staphylococcus epidermidis (ATCC 14990, clinical isolates: 73711, 35989, 80320, 13000, 77504, 79510), Enterococcus faecalis (ATCC 29212, clinical isolates: 49395, 81239, 83776, 27520), Enterococcus faecium (DSMZ 20477), Streptococcus pneumoniae (DSMZ 25500), Streptococcus pyogenes (ATCC 19615, clinical isolate: 10388), Proteus mirabilis (ATCC 14153, clinical isolates: 26786, 27761, 97656, 71913), Proteus vulgaris (DSMZ 13387, clinical isolate: 80196), Serratia marcescens (DSMZ 30121), Morganella morganii (DSMZ 6675, clinical isolate: 12615), Pseudomonas aeruginosa (clinical isolates: 26178, 12950, 26535, 68961, 74352), Stenotrophomonas maltophilia (DSMZ 50170, clinical isolates: 26394, 26396), Acinetobacter baumannii (DSMZ 30007), Acinetobacter lwoffii (DSMZ 2403, clinical isolate: 75496), Acinetobacter radioresistens (DSMZ 6976), Acinetobacter johnsonii (DSMZ 6963), Candida albicans (ATCC 10231, clinical isolate: 21179, 27184, 96917, 96635), Candida parapsilosis (clinical isolate: 4344).

    Techniques: