16s rrna sequence  (ATCC)


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    Structured Review

    ATCC 16s rrna sequence
    Effect of compound 1 on the expression of biofilm-associated genes in S. mutans . S. mutans was treated with compound 1 at the concentration of 60 μM in a BHI medium containing 0.2% of sucrose and incubated anaerobically at 37°C for 24 h. Biofilm cells were harvested, and the expression of biofilm-associated genes was assessed by real-time quantitative PCR (qRT-PCR). The mRNA expression levels were calibrated using <t>16S</t> <t>rRNA.</t> The data are expressed as the means ± standard deviations from three biologically independent experiments. The asterisks indicate that the gene expression between the control group (white bars) and the compound 1-treated group (black bars) was significantly different. *, P
    16s Rrna Sequence, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 40 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/16s rrna sequence/product/ATCC
    Average 95 stars, based on 40 article reviews
    Price from $9.99 to $1999.99
    16s rrna sequence - by Bioz Stars, 2022-11
    95/100 stars

    Images

    1) Product Images from "Discovery of Novel Iminosugar Compounds Produced by Lactobacillus paragasseri MJM60645 and Their Anti-Biofilm Activity against Streptococcus mutans"

    Article Title: Discovery of Novel Iminosugar Compounds Produced by Lactobacillus paragasseri MJM60645 and Their Anti-Biofilm Activity against Streptococcus mutans

    Journal: Microbiology Spectrum

    doi: 10.1128/spectrum.01122-22

    Effect of compound 1 on the expression of biofilm-associated genes in S. mutans . S. mutans was treated with compound 1 at the concentration of 60 μM in a BHI medium containing 0.2% of sucrose and incubated anaerobically at 37°C for 24 h. Biofilm cells were harvested, and the expression of biofilm-associated genes was assessed by real-time quantitative PCR (qRT-PCR). The mRNA expression levels were calibrated using 16S rRNA. The data are expressed as the means ± standard deviations from three biologically independent experiments. The asterisks indicate that the gene expression between the control group (white bars) and the compound 1-treated group (black bars) was significantly different. *, P
    Figure Legend Snippet: Effect of compound 1 on the expression of biofilm-associated genes in S. mutans . S. mutans was treated with compound 1 at the concentration of 60 μM in a BHI medium containing 0.2% of sucrose and incubated anaerobically at 37°C for 24 h. Biofilm cells were harvested, and the expression of biofilm-associated genes was assessed by real-time quantitative PCR (qRT-PCR). The mRNA expression levels were calibrated using 16S rRNA. The data are expressed as the means ± standard deviations from three biologically independent experiments. The asterisks indicate that the gene expression between the control group (white bars) and the compound 1-treated group (black bars) was significantly different. *, P

    Techniques Used: Expressing, Concentration Assay, Incubation, Real-time Polymerase Chain Reaction, Quantitative RT-PCR

    Neighbor-joining tree based on the 16S rRNA gene sequences showing the phylogenetic relationship of strain MJM60645 and its related taxa. The accession numbers in parentheses were obtained from NCBI. The numbers at nodes indicate percentage levels of bootstrap support based on a neighbor-joining method of 1,000 replications. The evolutionary distances were computed using the Kimura two-parameter method. The scale bar indicates 0.005 substitutions per nucleotide position.
    Figure Legend Snippet: Neighbor-joining tree based on the 16S rRNA gene sequences showing the phylogenetic relationship of strain MJM60645 and its related taxa. The accession numbers in parentheses were obtained from NCBI. The numbers at nodes indicate percentage levels of bootstrap support based on a neighbor-joining method of 1,000 replications. The evolutionary distances were computed using the Kimura two-parameter method. The scale bar indicates 0.005 substitutions per nucleotide position.

    Techniques Used:

    2) Product Images from "Streptococcusoriscaviae sp. nov. Infection Associated with Guinea Pigs"

    Article Title: Streptococcusoriscaviae sp. nov. Infection Associated with Guinea Pigs

    Journal: Microbiology Spectrum

    doi: 10.1128/spectrum.00014-22

    Phylogenetic trees showing the relationship of S. oriscaviae HKU75 T to its closely related Streptococcus species. The tree was inferred from the sequence data of (a) the 16S rRNA gene, (b) the partial groEL gene, and (c) the partial rpoB gene by the maximum-likelihood method using Kimura’s two parameter correction (16S rRNA) and general time reversible ( groEL and rpoB ) models, with Lactococcus lactis ATCC 19435 T as the outgroup. The scale bar indicates the estimated number of substitutions per base. Numbers at nodes indicate levels of bootstrap support calculated from 1,000 pseudoreplicates (values lower than 70 are not shown). Names and nucleotide accession numbers are given as cited in GenBank/JGI/PATRIC. The accession numbers for L. lactis ATCC 19435 T are NR_040955.1 (16S rRNA), FMTF01000003 ( groEL ), and FMTF01000007 ( rpoB ).
    Figure Legend Snippet: Phylogenetic trees showing the relationship of S. oriscaviae HKU75 T to its closely related Streptococcus species. The tree was inferred from the sequence data of (a) the 16S rRNA gene, (b) the partial groEL gene, and (c) the partial rpoB gene by the maximum-likelihood method using Kimura’s two parameter correction (16S rRNA) and general time reversible ( groEL and rpoB ) models, with Lactococcus lactis ATCC 19435 T as the outgroup. The scale bar indicates the estimated number of substitutions per base. Numbers at nodes indicate levels of bootstrap support calculated from 1,000 pseudoreplicates (values lower than 70 are not shown). Names and nucleotide accession numbers are given as cited in GenBank/JGI/PATRIC. The accession numbers for L. lactis ATCC 19435 T are NR_040955.1 (16S rRNA), FMTF01000003 ( groEL ), and FMTF01000007 ( rpoB ).

    Techniques Used: Sequencing

    3) Product Images from "Multi-Omics Techniques for Analysis Antifungal Mechanisms of Lipopeptides Produced by Bacillus velezensis GS-1 against Magnaporthe oryzae In Vitro"

    Article Title: Multi-Omics Techniques for Analysis Antifungal Mechanisms of Lipopeptides Produced by Bacillus velezensis GS-1 against Magnaporthe oryzae In Vitro

    Journal: International Journal of Molecular Sciences

    doi: 10.3390/ijms23073762

    Phylogenetic tree of GS-1 and 15 other Bacillus species based on 16S rRNA sequence analysis. The red color indicated the strain GS-1 isolated in this study.
    Figure Legend Snippet: Phylogenetic tree of GS-1 and 15 other Bacillus species based on 16S rRNA sequence analysis. The red color indicated the strain GS-1 isolated in this study.

    Techniques Used: Sequencing, Isolation

    4) Product Images from "Re-classification of Streptomyces venezuelae strains and mining secondary metabolite biosynthetic gene clusters"

    Article Title: Re-classification of Streptomyces venezuelae strains and mining secondary metabolite biosynthetic gene clusters

    Journal: iScience

    doi: 10.1016/j.isci.2021.103410

    Phylogenetic analysis of ten Streptomyces venezuelae strains with other streptomycetes (A) 16S rRNA sequence-based distance between ten Streptomyces venezuelae strains. Numbers at node indicate percentage of bootstrap support. (B) 16S rRNA sequence-based phylogenetic analysis. Four clades were detected with the BLAST identity value of more than 99%. Numbers at node indicate percentage of bootstrap support. (C) MALDI-TOF MS protein fingerprinting-based phylogenetic analysis. Four clades were detected with a Biotyper score value of more than 2.0. (D) Phylogenomic analysis. Eight S. venezuelae strains were clustered into three clades, G1 with the ANIm percentage identity of more than 95% and G2 and G3 with the ANIm percentage identity of more than 90%. The remaining two strains were not clustered with any streptomycetes.
    Figure Legend Snippet: Phylogenetic analysis of ten Streptomyces venezuelae strains with other streptomycetes (A) 16S rRNA sequence-based distance between ten Streptomyces venezuelae strains. Numbers at node indicate percentage of bootstrap support. (B) 16S rRNA sequence-based phylogenetic analysis. Four clades were detected with the BLAST identity value of more than 99%. Numbers at node indicate percentage of bootstrap support. (C) MALDI-TOF MS protein fingerprinting-based phylogenetic analysis. Four clades were detected with a Biotyper score value of more than 2.0. (D) Phylogenomic analysis. Eight S. venezuelae strains were clustered into three clades, G1 with the ANIm percentage identity of more than 95% and G2 and G3 with the ANIm percentage identity of more than 90%. The remaining two strains were not clustered with any streptomycetes.

    Techniques Used: Sequencing, Peptide Mass Fingerprinting

    5) Product Images from "Titanium Dioxide Nanoparticles Induce Inhibitory Effects against Planktonic Cells and Biofilms of Human Oral Cavity Isolates of Rothia mucilaginosa, Georgenia sp. and Staphylococcus saprophyticus"

    Article Title: Titanium Dioxide Nanoparticles Induce Inhibitory Effects against Planktonic Cells and Biofilms of Human Oral Cavity Isolates of Rothia mucilaginosa, Georgenia sp. and Staphylococcus saprophyticus

    Journal: Pharmaceutics

    doi: 10.3390/pharmaceutics13101564

    ( A ) shows an agarose gel electrophoresis result for purified 16S rDNA amplicons obtained after PCR amplification using genomic DNAs extracted from biofilm forming oral isolates as templates. ( B ) shows an unrooted neighbor-joined phylogenetic tree of closely related phylogenetic species based on 16S rRNA gene sequences of isolates SJM-04, SJM-38, and SJM-38 (marked with blue symbols). Sequences were aligned using the Clustal W sequence alignment tool in MEGA 7.0 software. The GenBank accession numbers of isolates and closely related species are presented in parenthesis. Bootstrap percentage values as obtained from 1000 replications of the data set are given at tree nodes. The scale bar represents the mean number of nucleotide substitutions per site.
    Figure Legend Snippet: ( A ) shows an agarose gel electrophoresis result for purified 16S rDNA amplicons obtained after PCR amplification using genomic DNAs extracted from biofilm forming oral isolates as templates. ( B ) shows an unrooted neighbor-joined phylogenetic tree of closely related phylogenetic species based on 16S rRNA gene sequences of isolates SJM-04, SJM-38, and SJM-38 (marked with blue symbols). Sequences were aligned using the Clustal W sequence alignment tool in MEGA 7.0 software. The GenBank accession numbers of isolates and closely related species are presented in parenthesis. Bootstrap percentage values as obtained from 1000 replications of the data set are given at tree nodes. The scale bar represents the mean number of nucleotide substitutions per site.

    Techniques Used: Agarose Gel Electrophoresis, Purification, Polymerase Chain Reaction, Amplification, Sequencing, Software

    6) Product Images from "Description of Chloramphenicol Resistant Kineococcus rubinsiae sp. nov. Isolated From a Spacecraft Assembly Facility"

    Article Title: Description of Chloramphenicol Resistant Kineococcus rubinsiae sp. nov. Isolated From a Spacecraft Assembly Facility

    Journal: Frontiers in Microbiology

    doi: 10.3389/fmicb.2020.01957

    Maximum-likelihood 16S rRNA phylogeny for Kineococcus rubinsiae B12 T and other members of class Actinobacteria reconstructed from 16S rRNA sequences found in public databases. The 16S rRNA sequence from Piscicoccus intestinalis NBRC 104926 T was used for the out-group. Bootstrapping values are included on internal nodes in the phylogeny, and represent the number of trials (out of 100) that included that particular branching pattern. Strain numbers followed by GenBank accession numbers are included for each sequence in the phylogeny. Black dots on internal nodes represent branch agreement between this maximum-likelihood phylogeny, a neighbor-joining phylogeny, and a maximum-parsimony phylogeny generated from the same sequence alignment.
    Figure Legend Snippet: Maximum-likelihood 16S rRNA phylogeny for Kineococcus rubinsiae B12 T and other members of class Actinobacteria reconstructed from 16S rRNA sequences found in public databases. The 16S rRNA sequence from Piscicoccus intestinalis NBRC 104926 T was used for the out-group. Bootstrapping values are included on internal nodes in the phylogeny, and represent the number of trials (out of 100) that included that particular branching pattern. Strain numbers followed by GenBank accession numbers are included for each sequence in the phylogeny. Black dots on internal nodes represent branch agreement between this maximum-likelihood phylogeny, a neighbor-joining phylogeny, and a maximum-parsimony phylogeny generated from the same sequence alignment.

    Techniques Used: Sequencing, Generated

    7) Product Images from "Description of Chloramphenicol Resistant Kineococcus rubinsiae sp. nov. Isolated From a Spacecraft Assembly Facility"

    Article Title: Description of Chloramphenicol Resistant Kineococcus rubinsiae sp. nov. Isolated From a Spacecraft Assembly Facility

    Journal: Frontiers in Microbiology

    doi: 10.3389/fmicb.2020.01957

    Maximum-likelihood 16S rRNA phylogeny for Kineococcus rubinsiae B12 T and other members of class Actinobacteria reconstructed from 16S rRNA sequences found in public databases. The 16S rRNA sequence from Piscicoccus intestinalis NBRC 104926 T was used for the out-group. Bootstrapping values are included on internal nodes in the phylogeny, and represent the number of trials (out of 100) that included that particular branching pattern. Strain numbers followed by GenBank accession numbers are included for each sequence in the phylogeny. Black dots on internal nodes represent branch agreement between this maximum-likelihood phylogeny, a neighbor-joining phylogeny, and a maximum-parsimony phylogeny generated from the same sequence alignment.
    Figure Legend Snippet: Maximum-likelihood 16S rRNA phylogeny for Kineococcus rubinsiae B12 T and other members of class Actinobacteria reconstructed from 16S rRNA sequences found in public databases. The 16S rRNA sequence from Piscicoccus intestinalis NBRC 104926 T was used for the out-group. Bootstrapping values are included on internal nodes in the phylogeny, and represent the number of trials (out of 100) that included that particular branching pattern. Strain numbers followed by GenBank accession numbers are included for each sequence in the phylogeny. Black dots on internal nodes represent branch agreement between this maximum-likelihood phylogeny, a neighbor-joining phylogeny, and a maximum-parsimony phylogeny generated from the same sequence alignment.

    Techniques Used: Sequencing, Generated

    8) Product Images from "Phylogenetic comparison between Type IX Secretion System (T9SS) protein components suggests evidence of horizontal gene transfer"

    Article Title: Phylogenetic comparison between Type IX Secretion System (T9SS) protein components suggests evidence of horizontal gene transfer

    Journal: PeerJ

    doi: 10.7717/peerj.9019

    The Bayesian Inference (BI) phylogenetic tree of T9SS containing Bacteroidetes species 16S ribosomal RNA (rRNA). The BI tree of 16S rRNA exhibits monophyletic clades where each clade consists of terminal nodes of the same colour that denotes that they belong to the same class under Bacteroidetes. There is a high support (posterior probability value > 0.95) for each monophyletic clade indicates by the black branch leading to each clade. The solid and dashed green, purple, and blue curves indicate there is a strong support for the monophyletic clades of Bacteroidia, Flavobacteriia, and Cytophagia classes respectively.
    Figure Legend Snippet: The Bayesian Inference (BI) phylogenetic tree of T9SS containing Bacteroidetes species 16S ribosomal RNA (rRNA). The BI tree of 16S rRNA exhibits monophyletic clades where each clade consists of terminal nodes of the same colour that denotes that they belong to the same class under Bacteroidetes. There is a high support (posterior probability value > 0.95) for each monophyletic clade indicates by the black branch leading to each clade. The solid and dashed green, purple, and blue curves indicate there is a strong support for the monophyletic clades of Bacteroidia, Flavobacteriia, and Cytophagia classes respectively.

    Techniques Used:

    9) Product Images from "Characterization of Campylobacter jejuni, Campylobacter upsaliensis, and a novel Campylobacter sp. in a captive nonhuman primate zoological collection"

    Article Title: Characterization of Campylobacter jejuni, Campylobacter upsaliensis, and a novel Campylobacter sp. in a captive nonhuman primate zoological collection

    Journal: Journal of medical primatology

    doi: 10.1111/jmp.12393

    Phylogenetic analysis of 16S rRNA sequences representing 2 isolates from the 3 species identified. Neighbor-joining trees were based on the comparison of genes from different Campylobacter species. Bar: number of nucleotide substitutions
    Figure Legend Snippet: Phylogenetic analysis of 16S rRNA sequences representing 2 isolates from the 3 species identified. Neighbor-joining trees were based on the comparison of genes from different Campylobacter species. Bar: number of nucleotide substitutions

    Techniques Used:

    10) Product Images from "Identification of phenol- and p-cresol-producing intestinal bacteria by using media supplemented with tyrosine and its metabolites"

    Article Title: Identification of phenol- and p-cresol-producing intestinal bacteria by using media supplemented with tyrosine and its metabolites

    Journal: FEMS Microbiology Ecology

    doi: 10.1093/femsec/fiy125

    Phylogenetic analysis of phenol or p -cresol producing bacteria DNA sequences of 16S rRNA from 153 strains were subjected to phylogenetic analysis using Clustal X 2.1 and phylogenetic trees were constructed. (A) Phenol- or (B) p -cresol-producing strains are colored red (strains that produced at least 100 µM product) or blue (strains that produced less than 100 µM product). Strains in black font are phenol non-producers. Cluster no. represents the Clostridium 16S rRNA phylogenic cluster number (Collins et al . 1994 ). Accession numbers used for analysis are displayed according to the name of each species, respectively.
    Figure Legend Snippet: Phylogenetic analysis of phenol or p -cresol producing bacteria DNA sequences of 16S rRNA from 153 strains were subjected to phylogenetic analysis using Clustal X 2.1 and phylogenetic trees were constructed. (A) Phenol- or (B) p -cresol-producing strains are colored red (strains that produced at least 100 µM product) or blue (strains that produced less than 100 µM product). Strains in black font are phenol non-producers. Cluster no. represents the Clostridium 16S rRNA phylogenic cluster number (Collins et al . 1994 ). Accession numbers used for analysis are displayed according to the name of each species, respectively.

    Techniques Used: Construct, Produced

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    ATCC mtbc 16s rrna reference sequences
    Phylogenetic tree of NTM in The Gambia based on <t>16S</t> <t>rRNA</t> gene sequence analysis of regions A and B of the mycobacteria gene. Red coloured fonts represent unknown <t>sequences</t> from the present study while fonts in black colour represent NTM and <t>MTBC</t> <t>reference</t> sequences of ATCC strains downloaded from GenBank.
    Mtbc 16s Rrna Reference Sequences, supplied by ATCC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/mtbc 16s rrna reference sequences/product/ATCC
    Average 90 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    mtbc 16s rrna reference sequences - by Bioz Stars, 2022-11
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    ATCC 16s rrna gene sequence analysis
    Phylogenetic tree of NTM in The Gambia based on <t>16S</t> <t>rRNA</t> gene sequence analysis of regions A and B of the mycobacteria gene. Red coloured fonts represent unknown <t>sequences</t> from the present study while fonts in black colour represent NTM and <t>MTBC</t> <t>reference</t> sequences of ATCC strains downloaded from GenBank.
    16s Rrna Gene Sequence Analysis, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/16s rrna gene sequence analysis/product/ATCC
    Average 95 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    16s rrna gene sequence analysis - by Bioz Stars, 2022-11
    95/100 stars
      Buy from Supplier

    99
    ATCC 16s rrna gene sequence
    Phylogenetic tree of NTM in The Gambia based on <t>16S</t> <t>rRNA</t> gene sequence analysis of regions A and B of the mycobacteria gene. Red coloured fonts represent unknown <t>sequences</t> from the present study while fonts in black colour represent NTM and <t>MTBC</t> <t>reference</t> sequences of ATCC strains downloaded from GenBank.
    16s Rrna Gene Sequence, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/16s rrna gene sequence/product/ATCC
    Average 99 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    16s rrna gene sequence - by Bioz Stars, 2022-11
    99/100 stars
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    Image Search Results


    Phylogenetic tree of NTM in The Gambia based on 16S rRNA gene sequence analysis of regions A and B of the mycobacteria gene. Red coloured fonts represent unknown sequences from the present study while fonts in black colour represent NTM and MTBC reference sequences of ATCC strains downloaded from GenBank.

    Journal: Scientific Reports

    Article Title: Pulmonary non-tuberculous mycobacteria in colonisation and disease in The Gambia

    doi: 10.1038/s41598-022-22777-x

    Figure Lengend Snippet: Phylogenetic tree of NTM in The Gambia based on 16S rRNA gene sequence analysis of regions A and B of the mycobacteria gene. Red coloured fonts represent unknown sequences from the present study while fonts in black colour represent NTM and MTBC reference sequences of ATCC strains downloaded from GenBank.

    Article Snippet: NTM and MTBC 16S rRNA reference sequences derived from American Type Culture Collection (ATCC) isolates were downloaded from Gen Bank to illustrate the phylogenetic relationship of unknown sequences and identify them.

    Techniques: Sequencing