16s rrna gene sequences  (ATCC)


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    ATCC 16s rrna gene sequences
    Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the relationship of Staphylococcus hsinchuensis sp. nov. H164 T with strains of closely related species. The tree was constructed by the neighbor-joining and minimum evolution methods based on a comparison of approximately 1450 bp, and Macrococcus caseolyticus ATCC 13548 T was used as the outgroup. Bootstrap values (>60%) based on 1000 replicates are shown at branch nodes. Bar, 0.5% sequence divergence.
    16s Rrna Gene Sequences, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Staphylococcus hsinchuensis sp. nov., Isolated from Soymilk"

    Article Title: Staphylococcus hsinchuensis sp. nov., Isolated from Soymilk

    Journal: Pathogens

    doi: 10.3390/pathogens13040343

    Phylogenetic tree based on 16S rRNA gene sequences showing the relationship of Staphylococcus hsinchuensis sp. nov. H164 T with strains of closely related species. The tree was constructed by the neighbor-joining and minimum evolution methods based on a comparison of approximately 1450 bp, and Macrococcus caseolyticus ATCC 13548 T was used as the outgroup. Bootstrap values (>60%) based on 1000 replicates are shown at branch nodes. Bar, 0.5% sequence divergence.
    Figure Legend Snippet: Phylogenetic tree based on 16S rRNA gene sequences showing the relationship of Staphylococcus hsinchuensis sp. nov. H164 T with strains of closely related species. The tree was constructed by the neighbor-joining and minimum evolution methods based on a comparison of approximately 1450 bp, and Macrococcus caseolyticus ATCC 13548 T was used as the outgroup. Bootstrap values (>60%) based on 1000 replicates are shown at branch nodes. Bar, 0.5% sequence divergence.

    Techniques Used: Construct, Comparison, Sequencing

    16s rrna gene  (ATCC)


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    ATCC 16s rrna gene
    16s Rrna Gene, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    16s rrna gene sequencing  (ATCC)


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    ATCC 16s rrna gene sequencing
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    16s rrna genes  (ATCC)


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    ATCC 16s rrna genes
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    16s rrna genes  (ATCC)


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    ATCC 16s rrna genes
    16s Rrna Genes, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    16s rrna gene  (ATCC)


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    ATCC 16s rrna gene
    ‘ Igneacidithiobacillus ’ consensus phylogenetic trees built using single marker genes. (A) Neighbor-joining (NJ) phylogenetic tree of <t>16S</t> <t>rRNA</t> gene sequences assigned to ‘ Igneacidithiobacillus ’ based on an alignment encompassing 1,272 bp of the full 16S rRNA gene sequence, with 223 variable sites and 82 parsimony informative sites (see also ). (B) Bayesian inference (BI) phylogenetic tree of the Fis protein sequences assigned to ‘ Igneacidithiobacillus ’ based on an alignment encompassing 99 aa, with 55 variable sites and 43 parsimony informative sites (see also ). Both trees were rooted with the ortholog of Thermithiobacillus tepidarius DSM 3134 T . The 16S rRNA tree included orthologs of ‘ Fervidacidithiobacillus caldus’ representative strains (clade 1A) to further resolve the branching pattern.
    16s Rrna Gene, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Acidithiobacillia class members originating at sites within the Pacific Ring of Fire and other tectonically active locations and description of the novel genus ‘ Igneacidithiobacillus’"

    Article Title: Acidithiobacillia class members originating at sites within the Pacific Ring of Fire and other tectonically active locations and description of the novel genus ‘ Igneacidithiobacillus’

    Journal: Frontiers in Microbiology

    doi: 10.3389/fmicb.2024.1360268

    ‘ Igneacidithiobacillus ’ consensus phylogenetic trees built using single marker genes. (A) Neighbor-joining (NJ) phylogenetic tree of 16S rRNA gene sequences assigned to ‘ Igneacidithiobacillus ’ based on an alignment encompassing 1,272 bp of the full 16S rRNA gene sequence, with 223 variable sites and 82 parsimony informative sites (see also ). (B) Bayesian inference (BI) phylogenetic tree of the Fis protein sequences assigned to ‘ Igneacidithiobacillus ’ based on an alignment encompassing 99 aa, with 55 variable sites and 43 parsimony informative sites (see also ). Both trees were rooted with the ortholog of Thermithiobacillus tepidarius DSM 3134 T . The 16S rRNA tree included orthologs of ‘ Fervidacidithiobacillus caldus’ representative strains (clade 1A) to further resolve the branching pattern.
    Figure Legend Snippet: ‘ Igneacidithiobacillus ’ consensus phylogenetic trees built using single marker genes. (A) Neighbor-joining (NJ) phylogenetic tree of 16S rRNA gene sequences assigned to ‘ Igneacidithiobacillus ’ based on an alignment encompassing 1,272 bp of the full 16S rRNA gene sequence, with 223 variable sites and 82 parsimony informative sites (see also ). (B) Bayesian inference (BI) phylogenetic tree of the Fis protein sequences assigned to ‘ Igneacidithiobacillus ’ based on an alignment encompassing 99 aa, with 55 variable sites and 43 parsimony informative sites (see also ). Both trees were rooted with the ortholog of Thermithiobacillus tepidarius DSM 3134 T . The 16S rRNA tree included orthologs of ‘ Fervidacidithiobacillus caldus’ representative strains (clade 1A) to further resolve the branching pattern.

    Techniques Used: Marker, Sequencing

    Lineages of ‘ Igneacidithiobacillus ’ inferred from single gene markers phylogenetic analysis.
    Figure Legend Snippet: Lineages of ‘ Igneacidithiobacillus ’ inferred from single gene markers phylogenetic analysis.

    Techniques Used:

    Overview of the basic genomic characteristics of the acknowledged ‘ Igneacidithiobacillus ’ spp.
    Figure Legend Snippet: Overview of the basic genomic characteristics of the acknowledged ‘ Igneacidithiobacillus ’ spp.

    Techniques Used:

    16s rrna gene level  (ATCC)


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    ATCC 16s rrna gene level
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    16s rrna gene sequences  (ATCC)


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    ATCC 16s rrna gene sequences
    16s Rrna Gene Sequences, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    16s rrna gene  (ATCC)


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    ATCC 16s rrna gene
    P. gingivalis W50 and F. nucleatum ATCC 10953 are present in a similar ratio after being co-cultured for 24 h. ( A ) Numbers of colony-forming units per milliliter determined for P. gingivalis W50 and F. nucleatum ATCC 10953 following the co-culture of both bacteria is shown ( n = 3). Differences were not significant according to t -tests. ( B ) Quantification of copy numbers of <t>16S</t> <t>rRNA</t> for P. gingivalis strain W50 ( Pg W50) and of nusG gene for F. nucleatum strain ATCC 10953 ( Fn 10953) by qPCR following co-culturing for 24 h. No differences were detected; unpaired t -test; n = 3. ( C – F ) Scanning electron microscopy images of aliquots from monocultures of P. gingivalis W50 ( C ) and F. nucleatum ATCC 10953 ( D ) and the co-culture of both bacteria ( E , F ). White arrows suggest physical interactions between P. gingivalis and F. nucleatum . Scale bar, 1 µm ( C , D , F ) and 10 µm ( E ).
    16s Rrna Gene, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Co-Culture of P . gingivalis and F . nucleatum Synergistically Elevates IL-6 Expression via TLR4 Signaling in Oral Keratinocytes"

    Article Title: Co-Culture of P . gingivalis and F . nucleatum Synergistically Elevates IL-6 Expression via TLR4 Signaling in Oral Keratinocytes

    Journal: International Journal of Molecular Sciences

    doi: 10.3390/ijms25073611

    P. gingivalis W50 and F. nucleatum ATCC 10953 are present in a similar ratio after being co-cultured for 24 h. ( A ) Numbers of colony-forming units per milliliter determined for P. gingivalis W50 and F. nucleatum ATCC 10953 following the co-culture of both bacteria is shown ( n = 3). Differences were not significant according to t -tests. ( B ) Quantification of copy numbers of 16S rRNA for P. gingivalis strain W50 ( Pg W50) and of nusG gene for F. nucleatum strain ATCC 10953 ( Fn 10953) by qPCR following co-culturing for 24 h. No differences were detected; unpaired t -test; n = 3. ( C – F ) Scanning electron microscopy images of aliquots from monocultures of P. gingivalis W50 ( C ) and F. nucleatum ATCC 10953 ( D ) and the co-culture of both bacteria ( E , F ). White arrows suggest physical interactions between P. gingivalis and F. nucleatum . Scale bar, 1 µm ( C , D , F ) and 10 µm ( E ).
    Figure Legend Snippet: P. gingivalis W50 and F. nucleatum ATCC 10953 are present in a similar ratio after being co-cultured for 24 h. ( A ) Numbers of colony-forming units per milliliter determined for P. gingivalis W50 and F. nucleatum ATCC 10953 following the co-culture of both bacteria is shown ( n = 3). Differences were not significant according to t -tests. ( B ) Quantification of copy numbers of 16S rRNA for P. gingivalis strain W50 ( Pg W50) and of nusG gene for F. nucleatum strain ATCC 10953 ( Fn 10953) by qPCR following co-culturing for 24 h. No differences were detected; unpaired t -test; n = 3. ( C – F ) Scanning electron microscopy images of aliquots from monocultures of P. gingivalis W50 ( C ) and F. nucleatum ATCC 10953 ( D ) and the co-culture of both bacteria ( E , F ). White arrows suggest physical interactions between P. gingivalis and F. nucleatum . Scale bar, 1 µm ( C , D , F ) and 10 µm ( E ).

    Techniques Used: Cell Culture, Co-Culture Assay, Bacteria, Electron Microscopy

    List of the forward and reverse primer sequences used for each gene of interest.
    Figure Legend Snippet: List of the forward and reverse primer sequences used for each gene of interest.

    Techniques Used:

    16s rrna gene sequences analyses  (ATCC)


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    ATCC 16s rrna gene sequences analyses
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    ATCC 16s rrna gene sequences
    Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the relationship of Staphylococcus hsinchuensis sp. nov. H164 T with strains of closely related species. The tree was constructed by the neighbor-joining and minimum evolution methods based on a comparison of approximately 1450 bp, and Macrococcus caseolyticus ATCC 13548 T was used as the outgroup. Bootstrap values (>60%) based on 1000 replicates are shown at branch nodes. Bar, 0.5% sequence divergence.
    16s Rrna Gene Sequences, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/16s rrna gene sequences/product/ATCC
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    ATCC 16s rrna gene
    Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the relationship of Staphylococcus hsinchuensis sp. nov. H164 T with strains of closely related species. The tree was constructed by the neighbor-joining and minimum evolution methods based on a comparison of approximately 1450 bp, and Macrococcus caseolyticus ATCC 13548 T was used as the outgroup. Bootstrap values (>60%) based on 1000 replicates are shown at branch nodes. Bar, 0.5% sequence divergence.
    16s Rrna Gene, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/16s rrna gene/product/ATCC
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    ATCC 16s rrna gene sequencing
    Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the relationship of Staphylococcus hsinchuensis sp. nov. H164 T with strains of closely related species. The tree was constructed by the neighbor-joining and minimum evolution methods based on a comparison of approximately 1450 bp, and Macrococcus caseolyticus ATCC 13548 T was used as the outgroup. Bootstrap values (>60%) based on 1000 replicates are shown at branch nodes. Bar, 0.5% sequence divergence.
    16s Rrna Gene Sequencing, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/16s rrna gene sequencing/product/ATCC
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    ATCC 16s rrna genes
    Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the relationship of Staphylococcus hsinchuensis sp. nov. H164 T with strains of closely related species. The tree was constructed by the neighbor-joining and minimum evolution methods based on a comparison of approximately 1450 bp, and Macrococcus caseolyticus ATCC 13548 T was used as the outgroup. Bootstrap values (>60%) based on 1000 replicates are shown at branch nodes. Bar, 0.5% sequence divergence.
    16s Rrna Genes, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/16s rrna genes/product/ATCC
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    ATCC 16s rrna gene level
    Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the relationship of Staphylococcus hsinchuensis sp. nov. H164 T with strains of closely related species. The tree was constructed by the neighbor-joining and minimum evolution methods based on a comparison of approximately 1450 bp, and Macrococcus caseolyticus ATCC 13548 T was used as the outgroup. Bootstrap values (>60%) based on 1000 replicates are shown at branch nodes. Bar, 0.5% sequence divergence.
    16s Rrna Gene Level, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/16s rrna gene level/product/ATCC
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    ATCC 16s rrna gene sequences analyses
    Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the relationship of Staphylococcus hsinchuensis sp. nov. H164 T with strains of closely related species. The tree was constructed by the neighbor-joining and minimum evolution methods based on a comparison of approximately 1450 bp, and Macrococcus caseolyticus ATCC 13548 T was used as the outgroup. Bootstrap values (>60%) based on 1000 replicates are shown at branch nodes. Bar, 0.5% sequence divergence.
    16s Rrna Gene Sequences Analyses, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Phylogenetic tree based on 16S rRNA gene sequences showing the relationship of Staphylococcus hsinchuensis sp. nov. H164 T with strains of closely related species. The tree was constructed by the neighbor-joining and minimum evolution methods based on a comparison of approximately 1450 bp, and Macrococcus caseolyticus ATCC 13548 T was used as the outgroup. Bootstrap values (>60%) based on 1000 replicates are shown at branch nodes. Bar, 0.5% sequence divergence.

    Journal: Pathogens

    Article Title: Staphylococcus hsinchuensis sp. nov., Isolated from Soymilk

    doi: 10.3390/pathogens13040343

    Figure Lengend Snippet: Phylogenetic tree based on 16S rRNA gene sequences showing the relationship of Staphylococcus hsinchuensis sp. nov. H164 T with strains of closely related species. The tree was constructed by the neighbor-joining and minimum evolution methods based on a comparison of approximately 1450 bp, and Macrococcus caseolyticus ATCC 13548 T was used as the outgroup. Bootstrap values (>60%) based on 1000 replicates are shown at branch nodes. Bar, 0.5% sequence divergence.

    Article Snippet: Comparative analysis of the 16S rRNA gene sequences revealed that the type strains S . urealyticus ATCC 49330 T (98.4% similarity), Staphylococcus canis H16/1A T (98.4%), Staphylococcus lloydii 23_2_7_LY T (98.2%), Staphylococcus kloosii ATCC 43959 T (98.2%), S. cohnii ATCC 29974 T (98.2%), Staphylococcus petrasii CCM 84118 T (98.2%), Staphylococcus durrellii 27_4_6_LY T (98.1%), Staphylococcus arlettae ATCC 43956 T (98.1%), and S. gallinarum ATCC 35539 T (98.0%) were the closest neighbors to the novel strain H164 T . These values were lower than the suggested cutoff value for species delineation (98.7%) [ ].

    Techniques: Construct, Comparison, Sequencing