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SourceForge net vcftools program
Vcftools Program, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/vcftools+program/vcftools/pmc06534931-74-0-9
Average 90 stars, based on 1 article reviews
vcftools program - by Bioz Stars, 2026-10
90/100 stars

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Article Title: Natural variation in CTF1 conferring cold tolerance at the flowering stage in rice
Article Snippet: Nucleotide diversity, FST and Tajima's D were calculated by vcftools (v0.1.16) ( https://vcftools.sourceforge.net ; Danecek et al ., ) with a sliding window of 5 kb and a step of 500 bp.

Article Title: Genetic improvement of eating and cooking quality of rice cultivars in southern China.
Article Snippet: Nucleotide diversity (p) was quantified using Vcftools (V.4.2, http://vcftools.sourceforge.net), with a window size of 20 kb and a step of 2 kb for all chromosomes and 1 kb nonoverlapping windows for candidate genes.

Article Title: Genetic improvement of eating and cooking quality of rice cultivars in southern China
Article Snippet: Nucleotide diversity (π) was quantified using Vcftools (V.4.2, http://vcftools.sourceforge.net ), with a window size of 20 kb and a step of 2 kb for all chromosomes and 1 kb nonoverlapping windows for candidate genes.

Article Title: Nine high-quality Anas genomes provide new insights into Anas evolution and domestication.
Article Snippet: To avoid the influence of ancient historical events on the inference of recent demographics, variants shared with other five wild ducks were filtered out using VCFtools (http://vcftools. sourceforge.net).

Software:

Article Title: Resequencing Composite Kazakh Whiteheaded Cattle: Insights into Ancestral Breed Contributions, Selection Signatures, and Candidate Genetic Variants.
Article Snippet: .. The VCFtools software (v.0.1.13; https: //sourceforge.net/projects/vcftools/files/; accessed on 15 January 2025) [25] was used for the calculation with the options “--fst-window-size 50,000 --fst-window-step 25,000 -maxmissing 0.8” for window-based analysis, and without the options “--fst-window-size, --fstwindow-step” for individual SNPs. ..

Article Title: Resequencing Composite Kazakh Whiteheaded Cattle: Insights into Ancestral Breed Contributions, Selection Signatures, and Candidate Genetic Variants.
Article Snippet: .. The VCFtools software (v.0.1.13; https://sourceforge.net/projects/vcftools/files/; accessed on 15 January 2025) [25] was used for the calculation with the options “--fst-window-size 50,000 --fst-window-step 25,000 -max-missing 0.8” for window-based analysis, and without the options “--fst-window-size, --fst-window-step” for individual SNPs. ..

Article Title: Genetic diversity and dietary adaptations of the Central Plains Han Chinese population in East Asia.
Article Snippet: .. Software used for the data analysis of this study is as follows: bcftools (https://samtools.github.io/bcftools/bcftools.html), FastQC (https:// www.bioinformatics.babraham.ac.uk/projects/fastqc/), BWA, SAMtools (https://github.com/samtools/), GATK, VCFtools (http:// vcftools.sourceforge.net/), PLINK, Repeatmasker (https://www. repeatmasker.org/), VEP, Samplot (https://github.com/ryanlayer/ samplot), IGV, R, EIGENSOFT, ADMIXTURE, PopLDdecay (https://github.com/BGI-shenzhen/PopLDdecay), TreeMix (https:// github.com/carolindahms/TreeMix), MSMC2. ..

Article Title: Resequencing Composite Kazakh Whiteheaded Cattle: Insights into Ancestral Breed Contributions, Selection Signatures, and Candidate Genetic Variants
Article Snippet: .. The VCFtools software (v.0.1.13; https://sourceforge.net/projects/vcftools/files/ ; accessed on 15 January 2025) [ ] was used for the calculation with the options “ --fst-window-size 50,000 --fst-window-step 25,000 -max-missing 0.8 ” for window-based analysis, and without the options “ --fst-window-size, --fst-window-step ” for individual SNPs. ..



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SourceForge net vcftools program
Vcftools Program, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/vcftools+program/vcftools/pmc06534931-74-0-9
Average 90 stars, based on 1 article reviews
vcftools program - by Bioz Stars, 2026-10
90/100 stars
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