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LifeMap Sciences tgex software
Tgex Software, supplied by LifeMap Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/variant+classification+program/tgex+software/pmc11666500-54-8-10
Average 90 stars, based on 1 article reviews
tgex software - by Bioz Stars, 2026-11
90/100 stars

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Software:

Article Title: Whole-exome sequencing identified a novel heterozygous variant in UBAP2L in a Chinese family with neurodevelopmental disorder characterized by impaired language, behavioral abnormalities, and dysmorphic facies
Article Snippet: .. Annotation and classification of variants were performed using TGex software (LifeMap Sciences, Alameda, CA, United States). ..

Article Title: The Genetics of 241 Fetuses With Talipes Equinovarus: A 8-Year Monocentric Retrospective Study.
Article Snippet: .. SNVs and indels were annotated and prioritized using TGex software (LifeMap Sciences, Alameda, CA). ..

Article Title: Expanding the Phenotype of the CACNA1C-Associated Neurological Disorders in Children: Systematic Literature Review and Description of a Novel Mutation
Article Snippet: .. DRAGEN (Dynamic Read Analysis for GENomics) (Illumina, Inc., San Diego, CA, USA) and the TGex software (LifeMap Sciences, http://tgex.genecards.org/ ) were used for the variant calling and annotating variants, respectively. ..

Article Title: Novel loss-of-function variants in WDR26 cause Skraban-Deardorff syndrome in two Chinese patients
Article Snippet: .. 1% in public databases (such as the 1,000 Genomes Project, Genome Aggregation Database, Exome Sequencing Project and ExAC) and our internal database, we used the TGex software (LifeMap Sciences, USA) to map 11 candidate variations in 10 genes ( MBD5 , LAMA1 , CDON , PLXNA1 , ASH1l , GABBR2 , TBR1 , CHAMP1 , JAG2 and WDR26 ) to the known phenotypes (including global developmental delay, delayed speech and language development, autistic behaviour, behavioural abnormalities, hypotonia, seizures and intellectual disability), and then extracted the variations (Supplementary Table S1). ..

Article Title: Identification of a novel FERMT1 variant causing kindler syndrome and a review of the clinical and molecular genetic features in Chinese patients
Article Snippet: .. Utilizing TGex software (LifeMap Sciences, USA), variants in six genes ( FLG, PLEC, ABCA12 , COL7A1 , KRT2 and FERMT1 ) linked with the patient's phenotype were detected in OMIM-listed genes. ..

Article Title: Identification of a novel FERMT1 variant causing kindler syndrome and a review of the clinical and molecular genetic features in Chinese patients
Article Snippet: .. Variant calling and annotation were performed using the Genome Analysis Toolkit (GATK), followed by further annotation refinement and variant prioritization with TGex software (v5.7, LifeMap Sciences). ..

Article Title: Whole-exome sequencing identified a novel heterozygous variant in UBAP2L in a Chinese family with neurodevelopmental disorder characterized by impaired language, behavioral abnormalities, and dysmorphic facies
Article Snippet: .. Using TGex software (LifeMap Sciences, United States), 9 candidate variants in 9 genes ( UBAP2L , CUX2 , CACNA1I , SAMD12 , HERC2 , IQSEC1 , NFASC , RERE , PLAA ) were mapped to known phenotypes including seizures, intellectual disability, developmental delay, motor delay, language delay and autistic behaviour. ..

other:

Article Title: Diagnosis of a patient with severe sensorineural hearing loss as the initial symptom caused by novel compound heterozygous variant in SLA19A2 gene.
Article Snippet: Objective: Thiamine-Responsive Megaloblastic Anemia (TRMA) syndrome, caused by biallelic variants in the SLC19A2 gene, typically presents with a triad of megaloblastic anemia, diabetes mellitus, and sensorineural hearing loss.. This study aims to determine the genetic etiology and clinical phenotype of a patient who presented with severe sensorineural hearing loss as the initial symptom, and to expand our understanding of the SLC19A2 variant spectrum.. Methods: Proband-only whole-exome sequencing was performed to screen the candidate variants, which were subsequently validated by Sanger sequencing within the family. cDNA sequencing based on RT-PCR and TA cloning analysis was used to determine the effect of splicing variants on mRNA processing of SLC19A2 gene.

Variant Assay:

Article Title: Expanding the Phenotype of the CACNA1C-Associated Neurological Disorders in Children: Systematic Literature Review and Description of a Novel Mutation
Article Snippet: .. DRAGEN (Dynamic Read Analysis for GENomics) (Illumina, Inc., San Diego, CA, USA) and the TGex software (LifeMap Sciences, http://tgex.genecards.org/ ) were used for the variant calling and annotating variants, respectively. ..

Article Title: Identification of a novel FERMT1 variant causing kindler syndrome and a review of the clinical and molecular genetic features in Chinese patients
Article Snippet: .. Variant calling and annotation were performed using the Genome Analysis Toolkit (GATK), followed by further annotation refinement and variant prioritization with TGex software (v5.7, LifeMap Sciences). ..

Sequencing:

Article Title: Novel loss-of-function variants in WDR26 cause Skraban-Deardorff syndrome in two Chinese patients
Article Snippet: .. 1% in public databases (such as the 1,000 Genomes Project, Genome Aggregation Database, Exome Sequencing Project and ExAC) and our internal database, we used the TGex software (LifeMap Sciences, USA) to map 11 candidate variations in 10 genes ( MBD5 , LAMA1 , CDON , PLXNA1 , ASH1l , GABBR2 , TBR1 , CHAMP1 , JAG2 and WDR26 ) to the known phenotypes (including global developmental delay, delayed speech and language development, autistic behaviour, behavioural abnormalities, hypotonia, seizures and intellectual disability), and then extracted the variations (Supplementary Table S1). ..



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