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whole transcriptome rna sequencing data  (Biotechnology Information)

 
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    Biotechnology Information whole transcriptome rna sequencing data
    Whole Transcriptome Rna Sequencing Data, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/transcriptomic+sequencing+data/data+rna+seq+%E2%80%A2/pmc13194572-323-0-22
    Average 86 stars, based on 1 article reviews
    whole transcriptome rna sequencing data - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    RNA sequencing:

    Article Title: Gamabufotalin suppresses pancreatic cancer through redox-homeostasis disruption by G6PD downregulation.
    Article Snippet: .. Availability of data and materials The RNA-sequencing raw data are deposited in the National Center for Biotechnology Information (NCBI) under accession number PRJNA1465187. ..

    RNA Sequencing:

    Article Title: mmu_circ_0012122/mmu-miR-1843-5p/Sertad2 axis: A novel regulatory pathway in rabies virus infection.
    Article Snippet: .. The raw RNA sequencing data that support the findings of this study are openly available in National Center for Biotechnology Information (NCBI), at https://www.ncbi.nlm.nih.gov/sra/? term=PRJNA105390742, and the raw experimental data are openly available in Figshare database at https://doi.org/10. ..

    Article Title: PKCα-mediated nuclear translocation of cGAS stabilizes β-catenin and drives metastasis.
    Article Snippet: Article PKCα-mediated nuclear translocation of cGAS stabilizes β-catenin and drives metastasis

    Article Title: Epithelial cell expansion drives cyst progression in genetic models of autosomal recessive polycystic kidney disease
    Article Snippet: .. • RNA-seq data have been deposited at the National Center for Biotechnology Information Sequence Read Archive (SRA): PRJNA1065508 and are publicly available as of the date of publication. .. • Original western blot images have been deposited at Mendeley at [ https://doi.org/10.17632/hcyv8nb8b8.1 ] and are publicly available as of the date of publication.

    Article Title: Mitochondrial protein OPA3 sustains cardiac function by regulating calcium handling in male mice.
    Article Snippet: .. The RNA-seq data generated in this study have been deposited in National Center for Biotechnology Information (NCBI) under the project ID PRJNA1460849 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1460849). .. Publicly available singlenucleus transcriptomic data of human cardiomyopathy are available through the Broad Institute’s Single Cell Portal (https://singlecell.broadinstitute.org/single_cell) under project ID SCP1303, SCP1849, and SCP1852.

    Generated:

    Article Title: PKCα-mediated nuclear translocation of cGAS stabilizes β-catenin and drives metastasis.
    Article Snippet: Article PKCα-mediated nuclear translocation of cGAS stabilizes β-catenin and drives metastasis

    Article Title: Mitochondrial protein OPA3 sustains cardiac function by regulating calcium handling in male mice.
    Article Snippet: .. The RNA-seq data generated in this study have been deposited in National Center for Biotechnology Information (NCBI) under the project ID PRJNA1460849 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1460849). .. Publicly available singlenucleus transcriptomic data of human cardiomyopathy are available through the Broad Institute’s Single Cell Portal (https://singlecell.broadinstitute.org/single_cell) under project ID SCP1303, SCP1849, and SCP1852.

    Sequencing:

    Article Title: Epithelial cell expansion drives cyst progression in genetic models of autosomal recessive polycystic kidney disease
    Article Snippet: .. • RNA-seq data have been deposited at the National Center for Biotechnology Information Sequence Read Archive (SRA): PRJNA1065508 and are publicly available as of the date of publication. .. • Original western blot images have been deposited at Mendeley at [ https://doi.org/10.17632/hcyv8nb8b8.1 ] and are publicly available as of the date of publication.

    Article Title: Nanopore long-read metabarcoding for comprehensive characterisation of parasitic nematodes in humans and animals: a development and diagnostic validation study.
    Article Snippet: .. All sequencing data produced in the present study are available from the National Center for Biotechnology Information BioProject database under the accession PRJNA1171489. ..

    Produced:

    Article Title: Nanopore long-read metabarcoding for comprehensive characterisation of parasitic nematodes in humans and animals: a development and diagnostic validation study.
    Article Snippet: .. All sequencing data produced in the present study are available from the National Center for Biotechnology Information BioProject database under the accession PRJNA1171489. ..



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    Identification of core genes associated with macrophage immune training and heart failure. (A) Schematic overview of human-derived macrophage trained immunity model and <t>transcriptomic</t> profiling workflow ( GSE235897 ). (B) The volcano plot and (C) DEGs heatmap of hMDMs from trained (n=3) and untrained (n=3) samples in the macrophage-trained immunity dataset GSE235897 (|log2FC| ≥ 0.585, p < 0.05). (D) Sample clustering dendrogram of GSE135055 dataset based on gene expression profiles. (E) Scale-free topology fit index and (F) mean connectivity analysis across a range of soft-thresholding powers. (G) Cluster dendrogram of genes showing co-expression modules identified by WGCNA in database GSE135055 . (H) Module-trait heatmap values represent correlation coefficients between healthy controls and HF samples (* p < 0.05, ** p < 0.01). (I) Venn diagram showing the overlap among heart failure DEGs, trained-immunity DEGs, and WGCNA module genes.
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    Image Search Results


    Identification of core genes associated with macrophage immune training and heart failure. (A) Schematic overview of human-derived macrophage trained immunity model and transcriptomic profiling workflow ( GSE235897 ). (B) The volcano plot and (C) DEGs heatmap of hMDMs from trained (n=3) and untrained (n=3) samples in the macrophage-trained immunity dataset GSE235897 (|log2FC| ≥ 0.585, p < 0.05). (D) Sample clustering dendrogram of GSE135055 dataset based on gene expression profiles. (E) Scale-free topology fit index and (F) mean connectivity analysis across a range of soft-thresholding powers. (G) Cluster dendrogram of genes showing co-expression modules identified by WGCNA in database GSE135055 . (H) Module-trait heatmap values represent correlation coefficients between healthy controls and HF samples (* p < 0.05, ** p < 0.01). (I) Venn diagram showing the overlap among heart failure DEGs, trained-immunity DEGs, and WGCNA module genes.

    Journal: Frontiers in Immunology

    Article Title: Identification of MTURN as a trained immunity-related biomarker for heart failure via integrative transcriptomic machine learning analysis and experimental validation

    doi: 10.3389/fimmu.2026.1739660

    Figure Lengend Snippet: Identification of core genes associated with macrophage immune training and heart failure. (A) Schematic overview of human-derived macrophage trained immunity model and transcriptomic profiling workflow ( GSE235897 ). (B) The volcano plot and (C) DEGs heatmap of hMDMs from trained (n=3) and untrained (n=3) samples in the macrophage-trained immunity dataset GSE235897 (|log2FC| ≥ 0.585, p < 0.05). (D) Sample clustering dendrogram of GSE135055 dataset based on gene expression profiles. (E) Scale-free topology fit index and (F) mean connectivity analysis across a range of soft-thresholding powers. (G) Cluster dendrogram of genes showing co-expression modules identified by WGCNA in database GSE135055 . (H) Module-trait heatmap values represent correlation coefficients between healthy controls and HF samples (* p < 0.05, ** p < 0.01). (I) Venn diagram showing the overlap among heart failure DEGs, trained-immunity DEGs, and WGCNA module genes.

    Article Snippet: For single-cell transcriptomic data, we accessed the SCP1303 project from the Broad Institute ( https://singlecell.broadinstitute.org/single_cell ), which includes raw scRNA-seq data from failing human hearts with dilated and hypertrophic cardiomyopathy.

    Techniques: Derivative Assay, Gene Expression, Expressing

    Five heart failure transcriptomic datasets were integrated with a macrophage-trained immunity model to identify immune-related biomarkers. Through DEGs analysis, WGCNA, CIBERSORT, and six machine learning algorithms, hub genes were prioritized with MTURN emerging as the top candidate. Its potential was further validated by scRNA-seq analysis, which confirmed MTURN enrichment in cardiac macrophages. Finally, MTURN expression was validated using previously published heart failure transcriptomic data and in vitro experiments.

    Journal: Frontiers in Immunology

    Article Title: Identification of MTURN as a trained immunity-related biomarker for heart failure via integrative transcriptomic machine learning analysis and experimental validation

    doi: 10.3389/fimmu.2026.1739660

    Figure Lengend Snippet: Five heart failure transcriptomic datasets were integrated with a macrophage-trained immunity model to identify immune-related biomarkers. Through DEGs analysis, WGCNA, CIBERSORT, and six machine learning algorithms, hub genes were prioritized with MTURN emerging as the top candidate. Its potential was further validated by scRNA-seq analysis, which confirmed MTURN enrichment in cardiac macrophages. Finally, MTURN expression was validated using previously published heart failure transcriptomic data and in vitro experiments.

    Article Snippet: For single-cell transcriptomic data, we accessed the SCP1303 project from the Broad Institute ( https://singlecell.broadinstitute.org/single_cell ), which includes raw scRNA-seq data from failing human hearts with dilated and hypertrophic cardiomyopathy.

    Techniques: Expressing, In Vitro